RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 RANBP6O60518 1105 aaKnown RBP20.68■□□□□ 0.9
CLSTN3-210ENST00000540931 CETPP11597 493 aa20.68■□□□□ 0.9
CLSTN3-210ENST00000540931 HAND2P61296 217 aa20.68■□□□□ 0.9
CLSTN3-210ENST00000540931 SART3Q15020 963 aaKnown RBP20.68■□□□□ 0.9
CLSTN3-210ENST00000540931 CREB3L3Q68CJ9 461 aa20.68■□□□□ 0.9
CLSTN3-210ENST00000540931 FASTKD5Q7L8L6 764 aaKnown RBP20.68■□□□□ 0.9
CLSTN3-210ENST00000540931 ZNF280CQ8ND82 737 aa20.68■□□□□ 0.9
CLSTN3-210ENST00000540931 IL27Q8NEV9 243 aa20.68■□□□□ 0.9
CLSTN3-210ENST00000540931 TTC14Q96N46 770 aa20.68■□□□□ 0.9
CLSTN3-210ENST00000540931 ZHX2Q9Y6X8 837 aa20.68■□□□□ 0.9
CLSTN3-210ENST00000540931 USP17L10C9JJH3 530 aa20.67■□□□□ 0.9
CLSTN3-210ENST00000540931 GDF11O95390 407 aa20.67■□□□□ 0.9
CLSTN3-210ENST00000540931 PSMA5P28066 241 aa20.67■□□□□ 0.9
CLSTN3-210ENST00000540931 HSPA4P34932 840 aa20.67■□□□□ 0.9
CLSTN3-210ENST00000540931 TFAP4Q01664 338 aa20.67■□□□□ 0.9
CLSTN3-210ENST00000540931 RAB3GAP1Q15042 981 aa20.67■□□□□ 0.9
CLSTN3-210ENST00000540931 RASAL3Q86YV0 1011 aa20.67■□□□□ 0.9
CLSTN3-210ENST00000540931 SLC44A5Q8NCS7 719 aa20.67■□□□□ 0.9
CLSTN3-210ENST00000540931 CLMNQ96JQ2 1002 aa20.67■□□□□ 0.9
CLSTN3-210ENST00000540931 ZIC5Q96T25 663 aa20.67■□□□□ 0.9
CLSTN3-210ENST00000540931 NYAP2Q9P242 653 aa20.67■□□□□ 0.9
CLSTN3-210ENST00000540931 FZD1Q9UP38 647 aa20.67■□□□□ 0.9
CLSTN3-210ENST00000540931 KCNH4Q9UQ05 1017 aa20.67■□□□□ 0.9
CLSTN3-210ENST00000540931 SLC27A2O14975 620 aa20.66■□□□□ 0.9
CLSTN3-210ENST00000540931 ICA1Q05084 483 aa20.66■□□□□ 0.9
CLSTN3-210ENST00000540931 OTUD5Q96G74 571 aa20.66■□□□□ 0.9
CLSTN3-210ENST00000540931 USP26Q9BXU7 913 aa20.66■□□□□ 0.9
CLSTN3-210ENST00000540931 ZCCHC17Q9NP64 241 aaKnown RBP20.66■□□□□ 0.9
CLSTN3-210ENST00000540931 AFG3L2Q9Y4W6 797 aa20.66■□□□□ 0.9
CLSTN3-210ENST00000540931 OTOFQ9HC10 1997 aa20.65■□□□□ 0.9
CLSTN3-210ENST00000540931 ERICH2A1L162 156 aa20.65■□□□□ 0.9
CLSTN3-210ENST00000540931 TTLL1O95922 423 aa20.65■□□□□ 0.9
CLSTN3-210ENST00000540931 ALDH1A1P00352 501 aa20.65■□□□□ 0.9
CLSTN3-210ENST00000540931 AKR1B1P15121 316 aa20.65■□□□□ 0.9
CLSTN3-210ENST00000540931 ANAPC15P60006 121 aa20.65■□□□□ 0.9
CLSTN3-210ENST00000540931 PABPC4Q13310 644 aaKnown RBP eCLIP20.65■□□□□ 0.9
CLSTN3-210ENST00000540931 RRP12Q5JTH9 1297 aaKnown RBP20.65■□□□□ 0.9
CLSTN3-210ENST00000540931 KCNB2Q92953 911 aa20.65■□□□□ 0.9
CLSTN3-210ENST00000540931 E7EWF7 191 aa20.64■□□□□ 0.89
CLSTN3-210ENST00000540931 PRDM1O75626 825 aa20.64■□□□□ 0.89
CLSTN3-210ENST00000540931 BACE1P56817 501 aa20.64■□□□□ 0.89
CLSTN3-210ENST00000540931 DGKZQ13574 1117 aa20.64■□□□□ 0.89
CLSTN3-210ENST00000540931 C8orf34Q49A92 452 aa20.64■□□□□ 0.89
CLSTN3-210ENST00000540931 DGKHQ86XP1 1220 aa20.64■□□□□ 0.89
CLSTN3-210ENST00000540931 TBC1D10CQ8IV04 446 aa20.64■□□□□ 0.89
CLSTN3-210ENST00000540931 TMTC2Q8N394 836 aa20.64■□□□□ 0.89
CLSTN3-210ENST00000540931 PROCA1Q8NCQ7 364 aaPredicted RBP20.64■□□□□ 0.89
CLSTN3-210ENST00000540931 LPAR1Q92633 364 aa20.64■□□□□ 0.89
CLSTN3-210ENST00000540931 UBAC1Q9BSL1 405 aa20.64■□□□□ 0.89
CLSTN3-210ENST00000540931 KIAA1683Q9H0B3 1180 aa20.64■□□□□ 0.89
CLSTN3-210ENST00000540931 TMOD4Q9NZQ9 345 aa20.64■□□□□ 0.89
CLSTN3-210ENST00000540931 WDR19Q8NEZ3 1342 aa20.63■□□□□ 0.89
CLSTN3-210ENST00000540931 ATAD5Q96QE3 1844 aa20.63■□□□□ 0.89
CLSTN3-210ENST00000540931 FAM155AB1AL88 458 aaPredicted RBP20.63■□□□□ 0.89
CLSTN3-210ENST00000540931 IRF6O14896 467 aa20.63■□□□□ 0.89
CLSTN3-210ENST00000540931 SEPT2Q15019 361 aa20.63■□□□□ 0.89
CLSTN3-210ENST00000540931 SH3D19Q5HYK7 790 aa20.63■□□□□ 0.89
CLSTN3-210ENST00000540931 USP17L2Q6R6M4 530 aa20.63■□□□□ 0.89
CLSTN3-210ENST00000540931 STK11IPQ8N1F8 1099 aa20.63■□□□□ 0.89
CLSTN3-210ENST00000540931 MKL1Q969V6 931 aa20.63■□□□□ 0.89
CLSTN3-210ENST00000540931 FEZ1Q99689 392 aa20.63■□□□□ 0.89
CLSTN3-210ENST00000540931 GOPCQ9HD26 462 aa20.63■□□□□ 0.89
CLSTN3-210ENST00000540931 MTMR4Q9NYA4 1195 aa20.63■□□□□ 0.89
CLSTN3-210ENST00000540931 TESPA1A2RU30 521 aaPredicted RBP20.62■□□□□ 0.89
CLSTN3-210ENST00000540931 KDM4AO75164 1064 aa20.62■□□□□ 0.89
CLSTN3-210ENST00000540931 MCM5P33992 734 aa20.62■□□□□ 0.89
CLSTN3-210ENST00000540931 SPP2Q13103 211 aa20.62■□□□□ 0.89
CLSTN3-210ENST00000540931 RRP1BQ14684 758 aaKnown RBP20.62■□□□□ 0.89
CLSTN3-210ENST00000540931 NEK1Q96PY6 1258 aa20.62■□□□□ 0.89
CLSTN3-210ENST00000540931 NBPF3Q9H094 633 aa20.62■□□□□ 0.89
CLSTN3-210ENST00000540931 SLC45A1Q9Y2W3 748 aa20.62■□□□□ 0.89
CLSTN3-210ENST00000540931 TMX2Q9Y320 296 aa20.62■□□□□ 0.89
CLSTN3-210ENST00000540931 IGKV6D-41A0A0C4DH26 115 aa20.61■□□□□ 0.89
CLSTN3-210ENST00000540931 A0A0G2JLL6 359 aaPredicted RBP20.61■□□□□ 0.89
CLSTN3-210ENST00000540931 TM4SF4P48230 202 aa20.61■□□□□ 0.89
CLSTN3-210ENST00000540931 EVX2Q03828 476 aa20.61■□□□□ 0.89
CLSTN3-210ENST00000540931 PRRT2Q7Z6L0 340 aaPredicted RBP20.61■□□□□ 0.89
CLSTN3-210ENST00000540931 TMEM87BQ96K49 555 aa20.61■□□□□ 0.89
CLSTN3-210ENST00000540931 C12orf42Q96LP6 360 aa20.61■□□□□ 0.89
CLSTN3-210ENST00000540931 NEDD4P46934 1319 aa20.6■□□□□ 0.89
CLSTN3-210ENST00000540931 TRIM75PA6NK02 468 aa20.6■□□□□ 0.89
CLSTN3-210ENST00000540931 B4E1Z4 1266 aa20.6■□□□□ 0.89
CLSTN3-210ENST00000540931 SLURP2P0DP57 97 aa20.6■□□□□ 0.89
CLSTN3-210ENST00000540931 GUCY1A2P33402 732 aa20.6■□□□□ 0.89
CLSTN3-210ENST00000540931 NOVP48745 357 aa20.6■□□□□ 0.89
CLSTN3-210ENST00000540931 FAM47AQ5JRC9 791 aa20.6■□□□□ 0.89
CLSTN3-210ENST00000540931 ZSCAN10Q96SZ4 725 aaPredicted RBP20.6■□□□□ 0.89
CLSTN3-210ENST00000540931 ZSWIM5Q9P217 1185 aa20.6■□□□□ 0.89
CLSTN3-210ENST00000540931 CCL15-CCL14A0A0B4J2E2 113 aa20.59■□□□□ 0.89
CLSTN3-210ENST00000540931 EEF2P13639 858 aaKnown RBP20.59■□□□□ 0.89
CLSTN3-210ENST00000540931 CCL15Q16663 113 aa20.59■□□□□ 0.89
CLSTN3-210ENST00000540931 ANKS1AQ92625 1134 aa20.59■□□□□ 0.89
CLSTN3-210ENST00000540931 CEP95Q96GE4 821 aa20.59■□□□□ 0.89
CLSTN3-210ENST00000540931 MS4A4AQ96JQ5 239 aa20.59■□□□□ 0.89
CLSTN3-210ENST00000540931 TM6SF1Q9BZW5 370 aa20.59■□□□□ 0.89
CLSTN3-210ENST00000540931 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.59■□□□□ 0.89
CLSTN3-210ENST00000540931 PNMA3Q9UL41 463 aa20.59■□□□□ 0.89
CLSTN3-210ENST00000540931 STX8Q9UNK0 236 aa20.59■□□□□ 0.89
CLSTN3-210ENST00000540931 SMIM22K7EJ46 135 aa20.58■□□□□ 0.89
CLSTN3-210ENST00000540931 TOP1P11387 765 aaKnown RBP20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms