RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 RBM43Q6ZSC3 357 aaKnown RBP11.14□□□□□ -0.63
CLIP1-212ENST00000540304 EGFL6Q8IUX8 553 aa11.14□□□□□ -0.63
CLIP1-212ENST00000540304 TEX11Q8IYF3 940 aa11.14□□□□□ -0.63
CLIP1-212ENST00000540304 MYH1P12882 1939 aa11.14□□□□□ -0.63
CLIP1-212ENST00000540304 NMT2O60551 498 aa11.14□□□□□ -0.63
CLIP1-212ENST00000540304 MMP1P03956 469 aa11.14□□□□□ -0.63
CLIP1-212ENST00000540304 SAFBQ15424 915 aaKnown RBP eCLIP11.14□□□□□ -0.63
CLIP1-212ENST00000540304 SF3A1Q15459 793 aaKnown RBP11.14□□□□□ -0.63
CLIP1-212ENST00000540304 SLC15A2Q16348 729 aa11.14□□□□□ -0.63
CLIP1-212ENST00000540304 UVSSAQ2YD98 709 aa11.14□□□□□ -0.63
CLIP1-212ENST00000540304 ADALQ6DHV7 355 aa11.14□□□□□ -0.63
CLIP1-212ENST00000540304 C2CD5Q86YS7 1000 aa11.14□□□□□ -0.63
CLIP1-212ENST00000540304 MAPKAPK5Q8IW41 473 aa11.14□□□□□ -0.63
CLIP1-212ENST00000540304 CMTR1Q8N1G2 835 aaKnown RBP11.14□□□□□ -0.63
CLIP1-212ENST00000540304 CCDC82Q8N4S0 544 aa11.14□□□□□ -0.63
CLIP1-212ENST00000540304 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.14□□□□□ -0.63
CLIP1-212ENST00000540304 PCDHA7Q9UN72 937 aa11.14□□□□□ -0.63
CLIP1-212ENST00000540304 A0A1W2PQ27 194 aa11.13□□□□□ -0.63
CLIP1-212ENST00000540304 A0A1W2PQ64 194 aa11.13□□□□□ -0.63
CLIP1-212ENST00000540304 A0A1W2PQD8 194 aa11.13□□□□□ -0.63
CLIP1-212ENST00000540304 IRF6O14896 467 aa11.13□□□□□ -0.63
CLIP1-212ENST00000540304 SPTLC2O15270 562 aa11.13□□□□□ -0.63
CLIP1-212ENST00000540304 AKAP17AQ02040 695 aaKnown RBP11.13□□□□□ -0.63
CLIP1-212ENST00000540304 SLC20A2Q08357 652 aa11.13□□□□□ -0.63
CLIP1-212ENST00000540304 EZH2Q15910 746 aaKnown RBP11.13□□□□□ -0.63
CLIP1-212ENST00000540304 STYK1Q6J9G0 422 aa11.13□□□□□ -0.63
CLIP1-212ENST00000540304 TRIM44Q96DX7 344 aaPredicted RBP11.13□□□□□ -0.63
CLIP1-212ENST00000540304 DYNLL2Q96FJ2 89 aa11.13□□□□□ -0.63
CLIP1-212ENST00000540304 CAMKK2Q96RR4 588 aa11.13□□□□□ -0.63
CLIP1-212ENST00000540304 EYA3Q99504 573 aa11.13□□□□□ -0.63
CLIP1-212ENST00000540304 MKNK2Q9HBH9 465 aa11.13□□□□□ -0.63
CLIP1-212ENST00000540304 STK32BQ9NY57 414 aa11.13□□□□□ -0.63
CLIP1-212ENST00000540304 H0YIN7 160 aa11.13□□□□□ -0.63
CLIP1-212ENST00000540304 RHBDL3P58872 404 aa11.13□□□□□ -0.63
CLIP1-212ENST00000540304 TFAP4Q01664 338 aa11.13□□□□□ -0.63
CLIP1-212ENST00000540304 FAM160A1Q05DH4 1040 aa11.13□□□□□ -0.63
CLIP1-212ENST00000540304 CCDC178Q5BJE1 867 aa11.13□□□□□ -0.63
CLIP1-212ENST00000540304 FSIP1Q8NA03 581 aa11.13□□□□□ -0.63
CLIP1-212ENST00000540304 CTCFLQ8NI51 663 aaPredicted RBP11.13□□□□□ -0.63
CLIP1-212ENST00000540304 MRPS27Q92552 414 aaKnown RBP11.13□□□□□ -0.63
CLIP1-212ENST00000540304 GOLPH3LQ9H4A5 285 aa11.13□□□□□ -0.63
CLIP1-212ENST00000540304 PRDM16Q9HAZ2 1276 aa11.13□□□□□ -0.63
CLIP1-212ENST00000540304 ZNF287Q9HBT7 754 aa11.13□□□□□ -0.63
CLIP1-212ENST00000540304 SAP30BPQ9UHR5 308 aaKnown RBP11.13□□□□□ -0.63
CLIP1-212ENST00000540304 FLT1P17948 1338 aa11.13□□□□□ -0.63
CLIP1-212ENST00000540304 DCAF8L1A6NGE4 600 aa11.12□□□□□ -0.63
CLIP1-212ENST00000540304 PRPF3O43395 683 aaKnown RBP11.12□□□□□ -0.63
CLIP1-212ENST00000540304 EN1Q05925 392 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-212ENST00000540304 FUT2Q10981 343 aa11.12□□□□□ -0.63
CLIP1-212ENST00000540304 RCSD1Q6JBY9 416 aa11.12□□□□□ -0.63
CLIP1-212ENST00000540304 TMTC3Q6ZXV5 915 aa11.12□□□□□ -0.63
CLIP1-212ENST00000540304 DGKHQ86XP1 1220 aa11.12□□□□□ -0.63
CLIP1-212ENST00000540304 FBXW7Q969H0 707 aa11.12□□□□□ -0.63
CLIP1-212ENST00000540304 PDLIM2Q96JY6 352 aa11.12□□□□□ -0.63
CLIP1-212ENST00000540304 CCDC94Q9BW85 323 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-212ENST00000540304 FOXP1Q9H334 677 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-212ENST00000540304 DAGLAQ9Y4D2 1042 aa11.12□□□□□ -0.63
CLIP1-212ENST00000540304 CTAGE5O15320 804 aa11.12□□□□□ -0.63
CLIP1-212ENST00000540304 PLEKHA8P1O95397 391 aa11.12□□□□□ -0.63
CLIP1-212ENST00000540304 XBP1P17861 261 aa11.12□□□□□ -0.63
CLIP1-212ENST00000540304 PLCD1P51178 756 aa11.12□□□□□ -0.63
CLIP1-212ENST00000540304 SNW1Q13573 536 aaKnown RBP11.12□□□□□ -0.63
CLIP1-212ENST00000540304 SLC39A14Q15043 492 aa11.12□□□□□ -0.63
CLIP1-212ENST00000540304 NOSTRINQ8IVI9 506 aa11.12□□□□□ -0.63
CLIP1-212ENST00000540304 CKAP2LQ8IYA6 745 aa11.12□□□□□ -0.63
CLIP1-212ENST00000540304 DIS3L2Q8IYB7 885 aaKnown RBP11.12□□□□□ -0.63
CLIP1-212ENST00000540304 ENGASEQ8NFI3 743 aa11.12□□□□□ -0.63
CLIP1-212ENST00000540304 ANKS1AQ92625 1134 aa11.12□□□□□ -0.63
CLIP1-212ENST00000540304 SLX4Q8IY92 1834 aa11.11□□□□□ -0.63
CLIP1-212ENST00000540304 G3V3G9 751 aa11.11□□□□□ -0.63
CLIP1-212ENST00000540304 KINO60870 393 aaKnown RBP11.11□□□□□ -0.63
CLIP1-212ENST00000540304 TSPY3P0CV98 308 aa11.11□□□□□ -0.63
CLIP1-212ENST00000540304 TSPY8P0CW00 308 aa11.11□□□□□ -0.63
CLIP1-212ENST00000540304 TYRO3Q06418 890 aa11.11□□□□□ -0.63
CLIP1-212ENST00000540304 DOK7Q18PE1 504 aa11.11□□□□□ -0.63
CLIP1-212ENST00000540304 DCAF8Q5TAQ9 597 aa11.11□□□□□ -0.63
CLIP1-212ENST00000540304 MTERF4Q7Z6M4 381 aaKnown RBP11.11□□□□□ -0.63
CLIP1-212ENST00000540304 ZNF444Q8N0Y2 327 aaPredicted RBP11.11□□□□□ -0.63
CLIP1-212ENST00000540304 KAT14Q9H8E8 782 aa11.11□□□□□ -0.63
CLIP1-212ENST00000540304 IL17RBQ9NRM6 502 aa11.11□□□□□ -0.63
CLIP1-212ENST00000540304 TCP11L1Q9NUJ3 509 aa11.11□□□□□ -0.63
CLIP1-212ENST00000540304 KCNJ14Q9UNX9 436 aa11.11□□□□□ -0.63
CLIP1-212ENST00000540304 BAZ2BQ9UIF8 2168 aaKnown RBP11.11□□□□□ -0.63
CLIP1-212ENST00000540304 CNTNAP5Q8WYK1 1306 aa11.11□□□□□ -0.63
CLIP1-212ENST00000540304 BTBD18B2RXH4 712 aa11.11□□□□□ -0.63
CLIP1-212ENST00000540304 PPP6R2O75170 966 aa11.11□□□□□ -0.63
CLIP1-212ENST00000540304 PKN1Q16512 942 aa11.11□□□□□ -0.63
CLIP1-212ENST00000540304 C16orf86Q6ZW13 317 aa11.11□□□□□ -0.63
CLIP1-212ENST00000540304 CERS5Q8N5B7 392 aa11.11□□□□□ -0.63
CLIP1-212ENST00000540304 JMYQ8N9B5 988 aa11.11□□□□□ -0.63
CLIP1-212ENST00000540304 MAP3K14Q99558 947 aa11.11□□□□□ -0.63
CLIP1-212ENST00000540304 KIF5BP33176 963 aa11.1□□□□□ -0.63
CLIP1-212ENST00000540304 SLC44A5Q8NCS7 719 aa11.1□□□□□ -0.63
CLIP1-212ENST00000540304 TTF2Q9UNY4 1162 aaKnown RBP11.1□□□□□ -0.63
CLIP1-212ENST00000540304 MRVI1Q9Y6F6 885 aa11.1□□□□□ -0.63
CLIP1-212ENST00000540304 V9GY48 417 aaPredicted RBP11.1□□□□□ -0.63
CLIP1-212ENST00000540304 SNED1Q8TER0 1413 aa11.1□□□□□ -0.63
CLIP1-212ENST00000540304 F8W031 263 aaPredicted RBP11.1□□□□□ -0.63
CLIP1-212ENST00000540304 RASA1P20936 1047 aa11.1□□□□□ -0.63
CLIP1-212ENST00000540304 PTPAQ15257 358 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms