RNA–Protein interactions for RNA: ENST00000539204.5

YBX3-207, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 649 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-207ENST00000539204 CYBAP13498 195 aa14.9□□□□□ -0.02
YBX3-207ENST00000539204 RAG1P15918 1043 aa14.9□□□□□ -0.02
YBX3-207ENST00000539204 ITGB8P26012 769 aa14.9□□□□□ -0.02
YBX3-207ENST00000539204 EPHB4P54760 987 aa14.9□□□□□ -0.02
YBX3-207ENST00000539204 TIMM10P62072 90 aa14.9□□□□□ -0.02
YBX3-207ENST00000539204 JAG1P78504 1218 aa14.9□□□□□ -0.02
YBX3-207ENST00000539204 USP17L24Q0WX57 530 aa14.9□□□□□ -0.02
YBX3-207ENST00000539204 ANO1Q5XXA6 986 aa14.9□□□□□ -0.02
YBX3-207ENST00000539204 DPP9Q86TI2 863 aa14.9□□□□□ -0.02
YBX3-207ENST00000539204 TEX11Q8IYF3 940 aa14.9□□□□□ -0.02
YBX3-207ENST00000539204 ZNF384Q8TF68 577 aa14.9□□□□□ -0.02
YBX3-207ENST00000539204 TIFAQ96CG3 184 aa14.9□□□□□ -0.02
YBX3-207ENST00000539204 SEPT4O43236 478 aa14.89□□□□□ -0.03
YBX3-207ENST00000539204 CLTBP09497 229 aa14.89□□□□□ -0.03
YBX3-207ENST00000539204 FPGSQ05932 587 aa14.89□□□□□ -0.03
YBX3-207ENST00000539204 GRB14Q14449 540 aa14.89□□□□□ -0.03
YBX3-207ENST00000539204 AKNAD1Q5T1N1 836 aa14.89□□□□□ -0.03
YBX3-207ENST00000539204 CRACR2BQ8N4Y2 399 aaPredicted RBP14.89□□□□□ -0.03
YBX3-207ENST00000539204 NSUN4Q96CB9 384 aaKnown RBP14.89□□□□□ -0.03
YBX3-207ENST00000539204 ARIH1Q9Y4X5 557 aaPredicted RBP14.89□□□□□ -0.03
YBX3-207ENST00000539204 GDF11O95390 407 aa14.88□□□□□ -0.03
YBX3-207ENST00000539204 IGHA2P01877 340 aa14.88□□□□□ -0.03
YBX3-207ENST00000539204 LRRC41Q15345 812 aa14.88□□□□□ -0.03
YBX3-207ENST00000539204 OLFML2BQ68BL8 750 aa14.88□□□□□ -0.03
YBX3-207ENST00000539204 CATSPERGQ6ZRH7 1159 aa14.88□□□□□ -0.03
YBX3-207ENST00000539204 RAI14Q9P0K7 980 aa14.88□□□□□ -0.03
YBX3-207ENST00000539204 ZBTB21Q9ULJ3 1066 aa14.88□□□□□ -0.03
YBX3-207ENST00000539204 KIAA0355O15063 1070 aa14.87□□□□□ -0.03
YBX3-207ENST00000539204 STRNO43815 780 aa14.87□□□□□ -0.03
YBX3-207ENST00000539204 CCDC85BQ15834 202 aaPredicted RBP14.87□□□□□ -0.03
YBX3-207ENST00000539204 SH3RF3Q8TEJ3 882 aaPredicted RBP14.87□□□□□ -0.03
YBX3-207ENST00000539204 NOL10Q9BSC4 688 aaKnown RBP14.87□□□□□ -0.03
YBX3-207ENST00000539204 TMEM39AQ9NV64 488 aa14.87□□□□□ -0.03
YBX3-207ENST00000539204 RLFQ13129 1914 aa14.87□□□□□ -0.03
YBX3-207ENST00000539204 BAG3O95817 575 aa14.86□□□□□ -0.03
YBX3-207ENST00000539204 MVPQ14764 893 aaKnown RBP14.86□□□□□ -0.03
YBX3-207ENST00000539204 SHROOM1Q2M3G4 852 aaPredicted RBP14.86□□□□□ -0.03
YBX3-207ENST00000539204 CCDC129Q6ZRS4 1044 aa14.86□□□□□ -0.03
YBX3-207ENST00000539204 TBC1D9Q6ZT07 1266 aa14.86□□□□□ -0.03
YBX3-207ENST00000539204 METTL16Q86W50 562 aaKnown RBP14.86□□□□□ -0.03
YBX3-207ENST00000539204 MRPL50Q8N5N7 158 aaKnown RBP14.86□□□□□ -0.03
YBX3-207ENST00000539204 XAGE2Q96GT9 111 aa14.86□□□□□ -0.03
YBX3-207ENST00000539204 C12orf42Q96LP6 360 aa14.86□□□□□ -0.03
YBX3-207ENST00000539204 TSPYL2Q9H2G4 693 aaPredicted RBP14.86□□□□□ -0.03
YBX3-207ENST00000539204 PRDM12Q9H4Q4 367 aa14.86□□□□□ -0.03
YBX3-207ENST00000539204 SLC5A4Q9NY91 659 aa14.86□□□□□ -0.03
YBX3-207ENST00000539204 BTBD7Q9P203 1132 aa14.86□□□□□ -0.03
YBX3-207ENST00000539204 AKAP2Q9Y2D5 859 aa14.86□□□□□ -0.03
YBX3-207ENST00000539204 FRMPD3Q5JV73 1810 aa14.86□□□□□ -0.03
YBX3-207ENST00000539204 ATAD5Q96QE3 1844 aa14.86□□□□□ -0.03
YBX3-207ENST00000539204 PTPRCP08575 1304 aa14.86□□□□□ -0.03
YBX3-207ENST00000539204 SYNGAP1Q96PV0 1343 aa14.86□□□□□ -0.03
YBX3-207ENST00000539204 USP14P54578 494 aa14.85□□□□□ -0.03
YBX3-207ENST00000539204 ZYXQ15942 572 aaKnown RBP14.85□□□□□ -0.03
YBX3-207ENST00000539204 CCDC184Q52MB2 194 aa14.85□□□□□ -0.03
YBX3-207ENST00000539204 PRAMEF19Q5SWL8 479 aa14.85□□□□□ -0.03
YBX3-207ENST00000539204 LBX2Q6XYB7 198 aa14.85□□□□□ -0.03
YBX3-207ENST00000539204 SPATA5Q8NB90 893 aa14.85□□□□□ -0.03
YBX3-207ENST00000539204 FEZ1Q99689 392 aa14.85□□□□□ -0.03
YBX3-207ENST00000539204 DNAJC18Q9H819 358 aa14.85□□□□□ -0.03
YBX3-207ENST00000539204 HMG20BQ9P0W2 317 aa14.85□□□□□ -0.03
YBX3-207ENST00000539204 PHF24Q9UPV7 400 aa14.85□□□□□ -0.03
YBX3-207ENST00000539204 HCN4Q9Y3Q4 1203 aa14.85□□□□□ -0.03
YBX3-207ENST00000539204 A0A1B0GUL7 405 aa14.84□□□□□ -0.03
YBX3-207ENST00000539204 PQBP1O60828 265 aaKnown RBP14.84□□□□□ -0.03
YBX3-207ENST00000539204 PLCG2P16885 1265 aa14.84□□□□□ -0.03
YBX3-207ENST00000539204 IGFBP4P22692 258 aa14.84□□□□□ -0.03
YBX3-207ENST00000539204 ADORA2AP29274 412 aa14.84□□□□□ -0.03
YBX3-207ENST00000539204 ATF7IPQ6VMQ6 1270 aa14.84□□□□□ -0.03
YBX3-207ENST00000539204 MAPKAPK5Q8IW41 473 aa14.84□□□□□ -0.03
YBX3-207ENST00000539204 TGFBRAP1Q8WUH2 860 aa14.84□□□□□ -0.03
YBX3-207ENST00000539204 PBX4Q9BYU1 374 aa14.84□□□□□ -0.03
YBX3-207ENST00000539204 LRP2BPQ9P2M1 347 aa14.84□□□□□ -0.03
YBX3-207ENST00000539204 PALD1Q9ULE6 856 aa14.84□□□□□ -0.03
YBX3-207ENST00000539204 PA2G4Q9UQ80 394 aaKnown RBP14.84□□□□□ -0.03
YBX3-207ENST00000539204 MYO9BQ13459 2157 aa14.83□□□□□ -0.04
YBX3-207ENST00000539204 DCDC2CA8MYV0 355 aa14.83□□□□□ -0.04
YBX3-207ENST00000539204 GH2P01242 217 aa14.83□□□□□ -0.04
YBX3-207ENST00000539204 GORABQ5T7V8 394 aa14.83□□□□□ -0.04
YBX3-207ENST00000539204 RNF180Q86T96 592 aa14.83□□□□□ -0.04
YBX3-207ENST00000539204 SLC44A5Q8NCS7 719 aa14.83□□□□□ -0.04
YBX3-207ENST00000539204 NEUROD6Q96NK8 337 aa14.83□□□□□ -0.04
YBX3-207ENST00000539204 TOX2Q96NM4 488 aa14.83□□□□□ -0.04
YBX3-207ENST00000539204 COPRSQ9NQ92 184 aa14.83□□□□□ -0.04
YBX3-207ENST00000539204 AATFQ9NY61 560 aaKnown RBP eCLIP14.83□□□□□ -0.04
YBX3-207ENST00000539204 TIMP1P01033 207 aa14.82□□□□□ -0.04
YBX3-207ENST00000539204 HLA-DOAP06340 250 aa14.82□□□□□ -0.04
YBX3-207ENST00000539204 UBTFL1P0CB47 393 aaPredicted RBP14.82□□□□□ -0.04
YBX3-207ENST00000539204 RARBP10826 455 aa14.82□□□□□ -0.04
YBX3-207ENST00000539204 BMP1P13497 986 aa14.82□□□□□ -0.04
YBX3-207ENST00000539204 VCAM1P19320 739 aa14.82□□□□□ -0.04
YBX3-207ENST00000539204 PBX2P40425 430 aa14.82□□□□□ -0.04
YBX3-207ENST00000539204 FAAP100Q0VG06 881 aa14.82□□□□□ -0.04
YBX3-207ENST00000539204 ADGRE1Q14246 886 aa14.82□□□□□ -0.04
YBX3-207ENST00000539204 FAM47AQ5JRC9 791 aa14.82□□□□□ -0.04
YBX3-207ENST00000539204 CCDC174Q6PII3 467 aa14.82□□□□□ -0.04
YBX3-207ENST00000539204 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.82□□□□□ -0.043e-19■□□□□ 11.3
YBX3-207ENST00000539204 LRFN3Q9BTN0 628 aa14.82□□□□□ -0.04
YBX3-207ENST00000539204 XPNPEP3Q9NQH7 507 aa14.82□□□□□ -0.04
YBX3-207ENST00000539204 HOXC10Q9NYD6 342 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms