RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 CUL4BQ13620 913 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 ANKRD20A3Q5VUR7 823 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 PEX26Q7Z412 305 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 NFATC2IPQ8NCF5 419 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 RAB17Q9H0T7 212 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 RTCBQ9Y3I0 505 aaKnown RBP11□□□□□ -0.65
COL4A6-208ENST00000538570 PARP3Q9Y6F1 533 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 NUP160Q12769 1436 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 POLR3AO14802 1390 aaPredicted RBP11□□□□□ -0.65
COL4A6-208ENST00000538570 DYTNA2CJ06 578 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 ZNF445P59923 1031 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 GRM1Q13255 1194 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 HAUS2Q9NVX0 235 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 DMRT2Q9Y5R5 561 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 V9GY48 417 aaPredicted RBP11□□□□□ -0.65
COL4A6-208ENST00000538570 TEX14Q8IWB6 1497 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 STMN1P16949 149 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 POSTNQ15063 836 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 SNCBQ16143 134 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 CASC4Q6P4E1 433 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 NELFBQ8WX92 580 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 ARHGEF10LQ9HCE6 1279 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 JAG2Q9Y219 1238 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 RRP15Q9Y3B9 282 aaKnown RBP11□□□□□ -0.65
COL4A6-208ENST00000538570 UHRF1BP1LA0JNW5 1464 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 LRRD1A4D1F6 860 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 ZNF500O60304 480 aaPredicted RBP10.99□□□□□ -0.65
COL4A6-208ENST00000538570 LUC7L3O95232 432 aaKnown RBP10.99□□□□□ -0.65
COL4A6-208ENST00000538570 POLD1P28340 1107 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 PRR16Q569H4 304 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 NSMCE1Q8WV22 266 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 JDP2Q8WYK2 163 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 RBM17Q96I25 401 aaKnown RBP10.99□□□□□ -0.65
COL4A6-208ENST00000538570 MKL2Q9ULH7 1088 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 JRKLQ9Y4A0 524 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 ZNF518AQ6AHZ1 1483 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 RNF40O75150 1001 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 TBC1D8O95759 1140 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 E2F4Q16254 413 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 DIS3L2Q8IYB7 885 aaKnown RBP10.99□□□□□ -0.65
COL4A6-208ENST00000538570 TSPYL6Q8N831 410 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 CCDC89Q8N998 374 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 SNX29Q8TEQ0 813 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 SNX14Q9Y5W7 946 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 CNGA1P29973 690 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 PPARDQ03181 441 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 N4BP2L2Q92802 583 aaPredicted RBP10.99□□□□□ -0.65
COL4A6-208ENST00000538570 ATP2A3Q93084 1043 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 RILPQ96NA2 401 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 PPP2R5CQ13362 524 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 KRT25Q7Z3Z0 450 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 SPATS2Q86XZ4 545 aaKnown RBP10.99□□□□□ -0.65
COL4A6-208ENST00000538570 KLHDC4Q8TBB5 520 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 P3H4Q92791 437 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 IQCDQ96DY2 449 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 ARMT1Q9H993 441 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 DNM3Q9UQ16 869 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 TROVE2P10155 538 aaKnown RBP eCLIP10.99□□□□□ -0.652e-8■■■■■ 38.3
COL4A6-208ENST00000538570 IL2RBP14784 551 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 MTX1Q13505 466 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 DDB1Q16531 1140 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 PSMB7Q99436 277 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 VPS37BQ9H9H4 285 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 NFE2L3Q9Y4A8 694 aa10.99□□□□□ -0.65
COL4A6-208ENST00000538570 FLT4P35916 1363 aa10.98□□□□□ -0.65
COL4A6-208ENST00000538570 KRT71Q3SY84 523 aa10.98□□□□□ -0.65
COL4A6-208ENST00000538570 HERC4Q5GLZ8 1057 aaPredicted RBP10.98□□□□□ -0.65
COL4A6-208ENST00000538570 GSDMBQ8TAX9 411 aa10.98□□□□□ -0.65
COL4A6-208ENST00000538570 SLF1Q9BQI6 1058 aa10.98□□□□□ -0.65
COL4A6-208ENST00000538570 LRWD1Q9UFC0 647 aa10.98□□□□□ -0.65
COL4A6-208ENST00000538570 AOX1Q06278 1338 aa10.98□□□□□ -0.65
COL4A6-208ENST00000538570 GNGT1P63211 74 aa10.98□□□□□ -0.65
COL4A6-208ENST00000538570 IRX4P78413 519 aa10.98□□□□□ -0.65
COL4A6-208ENST00000538570 CACYBPQ9HB71 228 aaKnown RBP10.98□□□□□ -0.65
COL4A6-208ENST00000538570 CREB3O43889 395 aa10.98□□□□□ -0.65
COL4A6-208ENST00000538570 NONOQ15233 471 aaKnown RBP eCLIP10.98□□□□□ -0.65
COL4A6-208ENST00000538570 TNNI3KQ59H18 835 aa10.98□□□□□ -0.65
COL4A6-208ENST00000538570 MAP3K21Q5TCX8 1036 aa10.98□□□□□ -0.65
COL4A6-208ENST00000538570 MYCT1Q8N699 235 aa10.98□□□□□ -0.65
COL4A6-208ENST00000538570 RPGRIP1Q96KN7 1286 aa10.98□□□□□ -0.65
COL4A6-208ENST00000538570 ATG3Q9NT62 314 aa10.98□□□□□ -0.65
COL4A6-208ENST00000538570 FPGT-TNNI3KV9GXZ4 949 aa10.98□□□□□ -0.65
COL4A6-208ENST00000538570 SEC24BO95487 1268 aa10.98□□□□□ -0.65
COL4A6-208ENST00000538570 RPSAP08865 295 aaKnown RBP10.98□□□□□ -0.65
COL4A6-208ENST00000538570 ADCY7P51828 1080 aa10.98□□□□□ -0.65
COL4A6-208ENST00000538570 SF3A3Q12874 501 aaKnown RBP eCLIP10.98□□□□□ -0.65
COL4A6-208ENST00000538570 PUM3Q15397 648 aaKnown RBP10.98□□□□□ -0.65
COL4A6-208ENST00000538570 NCOA5Q9HCD5 579 aaKnown RBP10.98□□□□□ -0.65
COL4A6-208ENST00000538570 VCX3AQ9NNX9 186 aa10.98□□□□□ -0.65
COL4A6-208ENST00000538570 EXOC3O60645 756 aa10.98□□□□□ -0.65
COL4A6-208ENST00000538570 GCNT3O95395 438 aa10.98□□□□□ -0.65
COL4A6-208ENST00000538570 MAN1A1P33908 653 aa10.98□□□□□ -0.65
COL4A6-208ENST00000538570 LONRF2Q1L5Z9 754 aa10.98□□□□□ -0.65
COL4A6-208ENST00000538570 CCDC84Q86UT8 332 aaPredicted RBP10.98□□□□□ -0.65
COL4A6-208ENST00000538570 TRIM6Q9C030 488 aaPredicted RBP10.98□□□□□ -0.65
COL4A6-208ENST00000538570 TMOD4Q9NZQ9 345 aa10.98□□□□□ -0.65
COL4A6-208ENST00000538570 MYO1AQ9UBC5 1043 aa10.98□□□□□ -0.65
COL4A6-208ENST00000538570 WDR7Q9Y4E6 1490 aa10.97□□□□□ -0.65
COL4A6-208ENST00000538570 STX2P32856 288 aa10.97□□□□□ -0.65
COL4A6-208ENST00000538570 SLC12A2P55011 1212 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms