RNA–Protein interactions for RNA: ENST00000534106.2

CHMP4A-208, Transcript of charged multivesicular body protein 4A, human

TSL 5

Gene CHMP4A, Length 370 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHMP4A-208	ENST00000534106	CYP2E1	P05181	493 aa	Predicted RBP	4.27	□□□□□ -1.73
CHMP4A-208	ENST00000534106	VEGFA	P15692	232 aa	Predicted RBP	4.27	□□□□□ -1.73
CHMP4A-208	ENST00000534106	NLRP12	P59046	1061 aa		4.27	□□□□□ -1.73
CHMP4A-208	ENST00000534106	DALRD3	Q5D0E6	543 aa	Known RBP	4.27	□□□□□ -1.73
CHMP4A-208	ENST00000534106	ANKRD34A	Q69YU3	496 aa		4.27	□□□□□ -1.73
CHMP4A-208	ENST00000534106	ZNF438	Q7Z4V0	828 aa		4.27	□□□□□ -1.73
CHMP4A-208	ENST00000534106	FAM20C	Q8IXL6	584 aa		4.27	□□□□□ -1.73
CHMP4A-208	ENST00000534106	FAM46A	Q96IP4	442 aa	Known RBP	4.27	□□□□□ -1.73
CHMP4A-208	ENST00000534106	FMNL2	Q96PY5	1086 aa		4.27	□□□□□ -1.73
CHMP4A-208	ENST00000534106	RUSC1	Q9BVN2	902 aa		4.27	□□□□□ -1.73
CHMP4A-208	ENST00000534106	KRTAP9-9	Q9BYP9	154 aa		4.27	□□□□□ -1.73
CHMP4A-208	ENST00000534106	KRTAP9-4	Q9BYQ2	154 aa		4.27	□□□□□ -1.73
CHMP4A-208	ENST00000534106	RNF208	Q9H0X6	261 aa		4.27	□□□□□ -1.73
CHMP4A-208	ENST00000534106	PRDM10	Q9NQV6	1147 aa		4.27	□□□□□ -1.73
CHMP4A-208	ENST00000534106	ATG3	Q9NT62	314 aa		4.27	□□□□□ -1.73
CHMP4A-208	ENST00000534106	KANSL3	Q9P2N6	904 aa		4.27	□□□□□ -1.73
CHMP4A-208	ENST00000534106	ASAP1	Q9ULH1	1129 aa		4.27	□□□□□ -1.73
CHMP4A-208	ENST00000534106	PALLD	Q8WX93	1383 aa		4.27	□□□□□ -1.73
CHMP4A-208	ENST00000534106	TNRC18	O15417	2968 aa	Predicted RBP	4.26	□□□□□ -1.73
CHMP4A-208	ENST00000534106	TOPAZ1	Q8N9V7	1692 aa		4.26	□□□□□ -1.73
CHMP4A-208	ENST00000534106	BTAF1	O14981	1849 aa		4.26	□□□□□ -1.73
CHMP4A-208	ENST00000534106		H3BRJ5	948 aa		4.26	□□□□□ -1.73
CHMP4A-208	ENST00000534106	CYP27B1	O15528	508 aa		4.26	□□□□□ -1.73
CHMP4A-208	ENST00000534106	KIF4A	O95239	1232 aa		4.26	□□□□□ -1.73
CHMP4A-208	ENST00000534106	HSPA8	P11142	646 aa	Known RBP	4.26	□□□□□ -1.73
CHMP4A-208	ENST00000534106	CTCF	P49711	727 aa	Predicted RBP	4.26	□□□□□ -1.73
CHMP4A-208	ENST00000534106	TMF1	P82094	1093 aa		4.26	□□□□□ -1.73
CHMP4A-208	ENST00000534106	FAM26D	Q5JW98	314 aa		4.26	□□□□□ -1.73
CHMP4A-208	ENST00000534106	TMC1	Q8TDI8	760 aa		4.26	□□□□□ -1.73
CHMP4A-208	ENST00000534106	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	4.26	□□□□□ -1.73
CHMP4A-208	ENST00000534106	COL26A1	Q96A83	441 aa		4.26	□□□□□ -1.73
CHMP4A-208	ENST00000534106	MFSD14A	Q96MC6	490 aa		4.26	□□□□□ -1.73
CHMP4A-208	ENST00000534106	POP1	Q99575	1024 aa	Known RBP	4.26	□□□□□ -1.73
CHMP4A-208	ENST00000534106	SLC12A5	Q9H2X9	1139 aa		4.26	□□□□□ -1.73
CHMP4A-208	ENST00000534106	OSGEP	Q9NPF4	335 aa		4.26	□□□□□ -1.73
CHMP4A-208	ENST00000534106	CXXC1	Q9P0U4	656 aa	Predicted RBP	4.26	□□□□□ -1.73
CHMP4A-208	ENST00000534106	PIM2	Q9P1W9	311 aa		4.26	□□□□□ -1.73
CHMP4A-208	ENST00000534106	STIM2	Q9P246	746 aa		4.26	□□□□□ -1.73
CHMP4A-208	ENST00000534106	SRP68	Q9UHB9	627 aa	Known RBP	4.26	□□□□□ -1.73
CHMP4A-208	ENST00000534106	ANGEL1	Q9UNK9	670 aa	Known RBP	4.26	□□□□□ -1.73
CHMP4A-208	ENST00000534106	KTN1	Q86UP2	1357 aa	Known RBP	4.26	□□□□□ -1.73
CHMP4A-208	ENST00000534106	NHS	Q6T4R5	1651 aa		4.26	□□□□□ -1.73
CHMP4A-208	ENST00000534106	TTC21A	Q8NDW8	1320 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	GLTPD2	A6NH11	291 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	PRR19	A6NJB7	356 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	TNFRSF10B	O14763	440 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	ADAM11	O75078	769 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	GYS1	P13807	737 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	PCSK2	P16519	638 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	SPINK2	P20155	84 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	CES1	P23141	567 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	SSFA2	P28290	1259 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	HOXC9	P31274	260 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	PREP	P48147	710 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	RGS19	P49795	217 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	DDR1	Q08345	913 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	RRS1	Q15050	365 aa	Known RBP	4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	NFKBIB	Q15653	356 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	ADAMTSL4	Q6UY14	1074 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	CAPN12	Q6ZSI9	719 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	DTX1	Q86Y01	620 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	ARHGEF28	Q8N1W1	1705 aa	Known RBP	4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	NLGN1	Q8N2Q7	840 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	FBXL6	Q8N531	539 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	CEP120	Q8N960	986 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	C12orf50	Q8NA57	414 aa	Predicted RBP	4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	WDR90	Q96KV7	1748 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	OSBPL1A	Q9BXW6	950 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	ADAM19	Q9H013	955 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	ELP3	Q9H9T3	547 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	CCDC87	Q9NVE4	849 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	TMEM63C	Q9P1W3	806 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	HIF3A	Q9Y2N7	669 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	LEMD3	Q9Y2U8	911 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	ABCC6	O95255	1503 aa		4.25	□□□□□ -1.73
CHMP4A-208	ENST00000534106	MAP3K19	Q56UN5	1328 aa		4.24	□□□□□ -1.73
CHMP4A-208	ENST00000534106	EVC2	Q86UK5	1308 aa		4.24	□□□□□ -1.73
CHMP4A-208	ENST00000534106	COL24A1	Q17RW2	1714 aa		4.24	□□□□□ -1.73
CHMP4A-208	ENST00000534106		A0A0C4DFX4	3053 aa		4.24	□□□□□ -1.73
CHMP4A-208	ENST00000534106	ADAMTS4	O75173	837 aa		4.24	□□□□□ -1.73
CHMP4A-208	ENST00000534106	DDN	O94850	711 aa	Predicted RBP	4.24	□□□□□ -1.73
CHMP4A-208	ENST00000534106	RPLP1	P05386	114 aa	Known RBP	4.24	□□□□□ -1.73
CHMP4A-208	ENST00000534106	MAP4	P27816	1152 aa	Known RBP	4.24	□□□□□ -1.73
CHMP4A-208	ENST00000534106	AMPH	P49418	695 aa		4.24	□□□□□ -1.73
CHMP4A-208	ENST00000534106	FMR1	Q06787	632 aa	Known RBP eCLIP	4.24	□□□□□ -1.73
CHMP4A-208	ENST00000534106	ELOA	Q14241	798 aa	Known RBP	4.24	□□□□□ -1.73
CHMP4A-208	ENST00000534106	OCLN	Q16625	522 aa		4.24	□□□□□ -1.73
CHMP4A-208	ENST00000534106	C8orf34	Q49A92	452 aa		4.24	□□□□□ -1.73
CHMP4A-208	ENST00000534106	PDE12	Q6L8Q7	609 aa	Known RBP	4.24	□□□□□ -1.73
CHMP4A-208	ENST00000534106	STK32A	Q8WU08	396 aa		4.24	□□□□□ -1.73
CHMP4A-208	ENST00000534106	WNT8B	Q93098	351 aa		4.24	□□□□□ -1.73
CHMP4A-208	ENST00000534106	ZMYND15	Q9H091	742 aa		4.24	□□□□□ -1.73
CHMP4A-208	ENST00000534106	ZMIZ1	Q9ULJ6	1067 aa		4.24	□□□□□ -1.73
CHMP4A-208	ENST00000534106	TIMELESS	Q9UNS1	1208 aa		4.24	□□□□□ -1.73
CHMP4A-208	ENST00000534106	MEGF6	O75095	1541 aa		4.24	□□□□□ -1.73
CHMP4A-208	ENST00000534106	NFAT5	O94916	1531 aa		4.24	□□□□□ -1.73
CHMP4A-208	ENST00000534106	USP31	Q70CQ4	1352 aa		4.24	□□□□□ -1.73
CHMP4A-208	ENST00000534106	TUBGCP6	Q96RT7	1819 aa		4.23	□□□□□ -1.73
CHMP4A-208	ENST00000534106	RGPD5	Q99666	1765 aa		4.23	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms