RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 HPS5Q9UPZ3 1129 aa24.77■■□□□ 1.56
VPS28-212ENST00000530836 NID2Q14112 1375 aa24.77■■□□□ 1.56
VPS28-212ENST00000530836 CDKL5O76039 1030 aa24.76■■□□□ 1.55
VPS28-212ENST00000530836 SYT1P21579 422 aa24.76■■□□□ 1.55
VPS28-212ENST00000530836 METAP2P50579 478 aaKnown RBP eCLIP24.76■■□□□ 1.55
VPS28-212ENST00000530836 SEC23AQ15436 765 aa24.76■■□□□ 1.55
VPS28-212ENST00000530836 NSUN7Q8NE18 718 aaKnown RBP24.76■■□□□ 1.55
VPS28-212ENST00000530836 CPLX1O14810 134 aa24.75■■□□□ 1.55
VPS28-212ENST00000530836 HLA-DOAP06340 250 aa24.75■■□□□ 1.55
VPS28-212ENST00000530836 PKP1Q13835 747 aa24.75■■□□□ 1.55
VPS28-212ENST00000530836 LARP1BQ659C4 914 aaKnown RBP24.75■■□□□ 1.55
VPS28-212ENST00000530836 SH3BP5LQ7L8J4 393 aa24.75■■□□□ 1.55
VPS28-212ENST00000530836 GBA2Q9HCG7 927 aaPredicted RBP24.75■■□□□ 1.55
VPS28-212ENST00000530836 CREBZFQ9NS37 354 aa24.75■■□□□ 1.55
VPS28-212ENST00000530836 TCP11L1Q9NUJ3 509 aa24.75■■□□□ 1.55
VPS28-212ENST00000530836 ZDHHC9Q9Y397 364 aa24.75■■□□□ 1.55
VPS28-212ENST00000530836 MYH1P12882 1939 aa24.75■■□□□ 1.55
VPS28-212ENST00000530836 IFIT1BQ5T764 474 aaKnown RBP24.75■■□□□ 1.55
VPS28-212ENST00000530836 C2orf69Q8N8R5 385 aa24.75■■□□□ 1.55
VPS28-212ENST00000530836 FAM184AQ8NB25 1140 aa24.75■■□□□ 1.55
VPS28-212ENST00000530836 ZKSCAN3Q9BRR0 538 aa24.75■■□□□ 1.55
VPS28-212ENST00000530836 SWAP70Q9UH65 585 aa24.75■■□□□ 1.55
VPS28-212ENST00000530836 CCDC196A0A1B0GTZ2 297 aa24.74■■□□□ 1.55
VPS28-212ENST00000530836 DDTLA6NHG4 134 aaPredicted RBP24.74■■□□□ 1.55
VPS28-212ENST00000530836 CDK8P49336 464 aa24.74■■□□□ 1.55
VPS28-212ENST00000530836 FKBP1BP68106 108 aa24.74■■□□□ 1.55
VPS28-212ENST00000530836 ZSCAN29Q8IWY8 852 aaPredicted RBP24.74■■□□□ 1.55
VPS28-212ENST00000530836 ENAHQ8N8S7 591 aaPredicted RBP24.74■■□□□ 1.55
VPS28-212ENST00000530836 DYNLL2Q96FJ2 89 aa24.74■■□□□ 1.55
VPS28-212ENST00000530836 PTPDC1A2A3K4 754 aa24.73■■□□□ 1.55
VPS28-212ENST00000530836 CALM1P0DP23 149 aa24.73■■□□□ 1.55
VPS28-212ENST00000530836 CALM2P0DP24 149 aa24.73■■□□□ 1.55
VPS28-212ENST00000530836 CALM3P0DP25 149 aa24.73■■□□□ 1.55
VPS28-212ENST00000530836 PTMSP20962 102 aa24.73■■□□□ 1.55
VPS28-212ENST00000530836 EVX2Q03828 476 aa24.73■■□□□ 1.55
VPS28-212ENST00000530836 DGKHQ86XP1 1220 aa24.73■■□□□ 1.55
VPS28-212ENST00000530836 HOOK2Q96ED9 719 aa24.73■■□□□ 1.55
VPS28-212ENST00000530836 EHD4Q9H223 541 aa24.73■■□□□ 1.55
VPS28-212ENST00000530836 NCOA5Q9HCD5 579 aaKnown RBP24.73■■□□□ 1.55
VPS28-212ENST00000530836 ATP6V1DQ9Y5K8 247 aa24.73■■□□□ 1.55
VPS28-212ENST00000530836 PPP1R12BO60237 982 aaPredicted RBP24.72■■□□□ 1.55
VPS28-212ENST00000530836 CTDNEP1O95476 244 aa24.72■■□□□ 1.55
VPS28-212ENST00000530836 ZSCAN22P10073 491 aaPredicted RBP24.72■■□□□ 1.55
VPS28-212ENST00000530836 MCM4P33991 863 aa24.72■■□□□ 1.55
VPS28-212ENST00000530836 TFAP4Q01664 338 aa24.72■■□□□ 1.55
VPS28-212ENST00000530836 CATIPQ7Z7H3 387 aa24.72■■□□□ 1.55
VPS28-212ENST00000530836 RGS22Q8NE09 1264 aa24.72■■□□□ 1.55
VPS28-212ENST00000530836 CSRNP1Q96S65 589 aa24.72■■□□□ 1.55
VPS28-212ENST00000530836 ATRNL1Q5VV63 1379 aa24.72■■□□□ 1.55
VPS28-212ENST00000530836 GOLGA8AA7E2F4 631 aa24.72■■□□□ 1.55
VPS28-212ENST00000530836 DDX11L8A8MPP1 907 aa24.72■■□□□ 1.55
VPS28-212ENST00000530836 GOLGA6L22H0YM25 854 aa24.72■■□□□ 1.55
VPS28-212ENST00000530836 TSPY3P0CV98 308 aa24.72■■□□□ 1.55
VPS28-212ENST00000530836 TSPY8P0CW00 308 aa24.72■■□□□ 1.55
VPS28-212ENST00000530836 SLC4A8Q2Y0W8 1093 aa24.72■■□□□ 1.55
VPS28-212ENST00000530836 MICU3Q86XE3 530 aa24.72■■□□□ 1.55
VPS28-212ENST00000530836 ANKS1AQ92625 1134 aa24.72■■□□□ 1.55
VPS28-212ENST00000530836 SENP2Q9HC62 589 aa24.72■■□□□ 1.55
VPS28-212ENST00000530836 SERPINB13Q9UIV8 391 aa24.72■■□□□ 1.55
VPS28-212ENST00000530836 SSC5DA1L4H1 1573 aa24.71■■□□□ 1.55
VPS28-212ENST00000530836 COL2A1P02458 1487 aaPredicted RBP24.71■■□□□ 1.55
VPS28-212ENST00000530836 JAK2O60674 1132 aa24.71■■□□□ 1.55
VPS28-212ENST00000530836 RASA1P20936 1047 aa24.71■■□□□ 1.55
VPS28-212ENST00000530836 GABPAQ06546 454 aa24.71■■□□□ 1.55
VPS28-212ENST00000530836 PRKG1Q13976 671 aa24.71■■□□□ 1.55
VPS28-212ENST00000530836 FAM47AQ5JRC9 791 aa24.71■■□□□ 1.55
VPS28-212ENST00000530836 SAPCD2Q86UD0 394 aa24.71■■□□□ 1.55
VPS28-212ENST00000530836 ZNF654Q8IZM8 581 aa24.71■■□□□ 1.55
VPS28-212ENST00000530836 TLL2Q9Y6L7 1015 aa24.71■■□□□ 1.55
VPS28-212ENST00000530836 DDAH1O94760 285 aa24.7■■□□□ 1.54
VPS28-212ENST00000530836 TTLL12Q14166 644 aaPredicted RBP24.7■■□□□ 1.54
VPS28-212ENST00000530836 MOB2Q70IA6 237 aa24.7■■□□□ 1.54
VPS28-212ENST00000530836 ARMC9Q7Z3E5 817 aa24.7■■□□□ 1.54
VPS28-212ENST00000530836 USP2O75604 605 aaPredicted RBP24.69■■□□□ 1.54
VPS28-212ENST00000530836 NBR1Q14596 966 aa24.69■■□□□ 1.54
VPS28-212ENST00000530836 MAP3K11Q16584 847 aa24.69■■□□□ 1.54
VPS28-212ENST00000530836 MIGA2Q7L4E1 593 aa24.69■■□□□ 1.54
VPS28-212ENST00000530836 PI4KBQ9UBF8 816 aa24.69■■□□□ 1.54
VPS28-212ENST00000530836 ABT1Q9ULW3 272 aaKnown RBP24.69■■□□□ 1.54
VPS28-212ENST00000530836 FZD1Q9UP38 647 aa24.69■■□□□ 1.54
VPS28-212ENST00000530836 BAG4O95429 457 aaKnown RBP24.68■■□□□ 1.54
VPS28-212ENST00000530836 MAP3K10Q02779 954 aa24.68■■□□□ 1.54
VPS28-212ENST00000530836 RTN1Q16799 776 aa24.68■■□□□ 1.54
VPS28-212ENST00000530836 DCAF15Q66K64 600 aa24.68■■□□□ 1.54
VPS28-212ENST00000530836 NEDD1Q8NHV4 660 aa24.68■■□□□ 1.54
VPS28-212ENST00000530836 ANP32EQ9BTT0 268 aa24.68■■□□□ 1.54
VPS28-212ENST00000530836 MTMR6Q9Y217 621 aa24.68■■□□□ 1.54
VPS28-212ENST00000530836 UBE2Q2LH0YL09 131 aa24.68■■□□□ 1.54
VPS28-212ENST00000530836 HTRA3P83110 453 aa24.68■■□□□ 1.54
VPS28-212ENST00000530836 FANCBQ8NB91 859 aa24.68■■□□□ 1.54
VPS28-212ENST00000530836 SLC44A5Q8NCS7 719 aa24.68■■□□□ 1.54
VPS28-212ENST00000530836 DDX11Q96FC9 970 aa24.68■■□□□ 1.54
VPS28-212ENST00000530836 RBM28Q9NW13 759 aaKnown RBP24.68■■□□□ 1.54
VPS28-212ENST00000530836 TRPM7Q96QT4 1865 aa24.67■■□□□ 1.54
VPS28-212ENST00000530836 F13A1P00488 732 aa24.67■■□□□ 1.54
VPS28-212ENST00000530836 IREB2P48200 963 aaKnown RBP24.67■■□□□ 1.54
VPS28-212ENST00000530836 HUNKP57058 714 aa24.67■■□□□ 1.54
VPS28-212ENST00000530836 FOXP4Q8IVH2 680 aaPredicted RBP24.67■■□□□ 1.54
VPS28-212ENST00000530836 MAP3K14Q99558 947 aa24.67■■□□□ 1.54
VPS28-212ENST00000530836 PLIN4Q96Q06 1357 aa24.66■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms