RNA–Protein interactions for RNA: ENST00000513989.5

NEDD9-214, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 4

Gene NEDD9, Length 587 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-214ENST00000513989 CEP290O15078 2479 aa11.97□□□□□ -0.49
NEDD9-214ENST00000513989 USP2O75604 605 aaPredicted RBP11.96□□□□□ -0.49
NEDD9-214ENST00000513989 PRDM1O75626 825 aa11.96□□□□□ -0.49
NEDD9-214ENST00000513989 ASNSP08243 561 aa11.96□□□□□ -0.49
NEDD9-214ENST00000513989 SHMT1P34896 483 aa11.96□□□□□ -0.49
NEDD9-214ENST00000513989 FGD1P98174 961 aa11.96□□□□□ -0.49
NEDD9-214ENST00000513989 SREBF2Q12772 1141 aa11.96□□□□□ -0.49
NEDD9-214ENST00000513989 BLOC1S2Q6QNY1 142 aa11.96□□□□□ -0.49
NEDD9-214ENST00000513989 DHX32Q7L7V1 743 aaKnown RBP11.96□□□□□ -0.49
NEDD9-214ENST00000513989 TBC1D10CQ8IV04 446 aa11.96□□□□□ -0.49
NEDD9-214ENST00000513989 WNK4Q96J92 1243 aa11.96□□□□□ -0.49
NEDD9-214ENST00000513989 JAKMIP1Q96N16 626 aaKnown RBP11.96□□□□□ -0.49
NEDD9-214ENST00000513989 TBC1D32Q96NH3 1257 aa11.96□□□□□ -0.49
NEDD9-214ENST00000513989 WRNIP1Q96S55 665 aa11.96□□□□□ -0.49
NEDD9-214ENST00000513989 UBAC1Q9BSL1 405 aa11.96□□□□□ -0.49
NEDD9-214ENST00000513989 ZNF112Q9UJU3 913 aa11.96□□□□□ -0.49
NEDD9-214ENST00000513989 ROBO3Q96MS0 1386 aa11.95□□□□□ -0.5
NEDD9-214ENST00000513989 PHF20L1A8MW92 1017 aa11.95□□□□□ -0.5
NEDD9-214ENST00000513989 B4E1Z4 1266 aa11.95□□□□□ -0.5
NEDD9-214ENST00000513989 SLC34A2O95436 690 aa11.95□□□□□ -0.5
NEDD9-214ENST00000513989 CAP2P40123 477 aa11.95□□□□□ -0.5
NEDD9-214ENST00000513989 CAP1Q01518 475 aa11.95□□□□□ -0.5
NEDD9-214ENST00000513989 TMEM179Q6ZVK1 233 aa11.95□□□□□ -0.5
NEDD9-214ENST00000513989 IFNL1Q8IU54 200 aa11.95□□□□□ -0.5
NEDD9-214ENST00000513989 ANKRD13AQ8IZ07 590 aa11.95□□□□□ -0.5
NEDD9-214ENST00000513989 TMTC2Q8N394 836 aa11.95□□□□□ -0.5
NEDD9-214ENST00000513989 SLC44A5Q8NCS7 719 aa11.95□□□□□ -0.5
NEDD9-214ENST00000513989 TTC14Q96N46 770 aa11.95□□□□□ -0.5
NEDD9-214ENST00000513989 MTA3Q9BTC8 594 aa11.95□□□□□ -0.5
NEDD9-214ENST00000513989 KANSL2Q9H9L4 492 aa11.95□□□□□ -0.5
NEDD9-214ENST00000513989 INCENPQ9NQS7 918 aa11.95□□□□□ -0.5
NEDD9-214ENST00000513989 ZSWIM5Q9P217 1185 aa11.95□□□□□ -0.5
NEDD9-214ENST00000513989 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.95□□□□□ -0.5
NEDD9-214ENST00000513989 FAM196BA6NMK8 535 aa11.94□□□□□ -0.5
NEDD9-214ENST00000513989 KDM4AO75164 1064 aa11.94□□□□□ -0.5
NEDD9-214ENST00000513989 ZBTB48P10074 688 aaPredicted RBP11.94□□□□□ -0.5
NEDD9-214ENST00000513989 CASTP20810 708 aaKnown RBP11.94□□□□□ -0.5
NEDD9-214ENST00000513989 RASA1P20936 1047 aa11.94□□□□□ -0.5
NEDD9-214ENST00000513989 RAB3GAP1Q15042 981 aa11.94□□□□□ -0.5
NEDD9-214ENST00000513989 FAM47AQ5JRC9 791 aa11.94□□□□□ -0.5
NEDD9-214ENST00000513989 RUFY3Q7L099 469 aa11.94□□□□□ -0.5
NEDD9-214ENST00000513989 NEDD1Q8NHV4 660 aa11.94□□□□□ -0.5
NEDD9-214ENST00000513989 SLC10A4Q96EP9 437 aa11.94□□□□□ -0.5
NEDD9-214ENST00000513989 PTPN18Q99952 460 aa11.94□□□□□ -0.5
NEDD9-214ENST00000513989 TBC1D2Q9BYX2 928 aa11.94□□□□□ -0.5
NEDD9-214ENST00000513989 NBPF3Q9H094 633 aa11.94□□□□□ -0.5
NEDD9-214ENST00000513989 ZSWIM6Q9HCJ5 1215 aa11.94□□□□□ -0.5
NEDD9-214ENST00000513989 TCP11L1Q9NUJ3 509 aa11.94□□□□□ -0.5
NEDD9-214ENST00000513989 PTPRFP10586 1907 aa11.94□□□□□ -0.5
NEDD9-214ENST00000513989 WDR19Q8NEZ3 1342 aa11.93□□□□□ -0.5
NEDD9-214ENST00000513989 MANSC4A6NHS7 340 aaPredicted RBP11.93□□□□□ -0.5
NEDD9-214ENST00000513989 IFIT3O14879 490 aaKnown RBP11.93□□□□□ -0.5
NEDD9-214ENST00000513989 GH2P01242 217 aa11.93□□□□□ -0.5
NEDD9-214ENST00000513989 EVX2Q03828 476 aa11.93□□□□□ -0.5
NEDD9-214ENST00000513989 RABEP1Q15276 862 aa11.93□□□□□ -0.5
NEDD9-214ENST00000513989 ANKRD1Q15327 319 aa11.93□□□□□ -0.5
NEDD9-214ENST00000513989 PKN2Q16513 984 aaKnown RBP11.93□□□□□ -0.5
NEDD9-214ENST00000513989 SYNE3Q6ZMZ3 975 aa11.93□□□□□ -0.5
NEDD9-214ENST00000513989 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.93□□□□□ -0.5
NEDD9-214ENST00000513989 SCYL3Q8IZE3 742 aa11.93□□□□□ -0.5
NEDD9-214ENST00000513989 IL17RAQ96F46 866 aa11.93□□□□□ -0.5
NEDD9-214ENST00000513989 TMEM87BQ96K49 555 aa11.93□□□□□ -0.5
NEDD9-214ENST00000513989 ZSCAN10Q96SZ4 725 aaPredicted RBP11.93□□□□□ -0.5
NEDD9-214ENST00000513989 SH2D4AQ9H788 454 aa11.93□□□□□ -0.5
NEDD9-214ENST00000513989 AS3MTQ9HBK9 375 aa11.93□□□□□ -0.5
NEDD9-214ENST00000513989 NEDD4P46934 1319 aa11.92□□□□□ -0.5
NEDD9-214ENST00000513989 TESPA1A2RU30 521 aaPredicted RBP11.92□□□□□ -0.5
NEDD9-214ENST00000513989 USP17L5A8MUK1 530 aa11.92□□□□□ -0.5
NEDD9-214ENST00000513989 SMIM22K7EJ46 135 aa11.92□□□□□ -0.5
NEDD9-214ENST00000513989 PRC1O43663 620 aa11.92□□□□□ -0.5
NEDD9-214ENST00000513989 ST18O60284 1047 aa11.92□□□□□ -0.5
NEDD9-214ENST00000513989 FKTNO75072 461 aa11.92□□□□□ -0.5
NEDD9-214ENST00000513989 GDF11O95390 407 aa11.92□□□□□ -0.5
NEDD9-214ENST00000513989 TTLL1O95922 423 aa11.92□□□□□ -0.5
NEDD9-214ENST00000513989 AKR1B1P15121 316 aa11.92□□□□□ -0.5
NEDD9-214ENST00000513989 RPS6KB1P23443 525 aa11.92□□□□□ -0.5
NEDD9-214ENST00000513989 NEK4P51957 841 aa11.92□□□□□ -0.5
NEDD9-214ENST00000513989 EXOSC10Q01780 885 aaKnown RBP11.92□□□□□ -0.5
NEDD9-214ENST00000513989 ADCK5Q3MIX3 580 aa11.92□□□□□ -0.5
NEDD9-214ENST00000513989 NOL9Q5SY16 702 aaKnown RBP11.92□□□□□ -0.5
NEDD9-214ENST00000513989 FBXO46Q6PJ61 603 aaPredicted RBP11.92□□□□□ -0.5
NEDD9-214ENST00000513989 STOX1Q6ZVD7 989 aa11.92□□□□□ -0.5
NEDD9-214ENST00000513989 DGKHQ86XP1 1220 aa11.92□□□□□ -0.5
NEDD9-214ENST00000513989 MB21D2Q8IYB1 491 aaPredicted RBP11.92□□□□□ -0.5
NEDD9-214ENST00000513989 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.92□□□□□ -0.5
NEDD9-214ENST00000513989 ZKSCAN4Q969J2 545 aaPredicted RBP11.92□□□□□ -0.5
NEDD9-214ENST00000513989 MS4A4AQ96JQ5 239 aa11.92□□□□□ -0.5
NEDD9-214ENST00000513989 DNAJC18Q9H819 358 aa11.92□□□□□ -0.5
NEDD9-214ENST00000513989 PDRG1Q9NUG6 133 aa11.92□□□□□ -0.5
NEDD9-214ENST00000513989 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.92□□□□□ -0.5
NEDD9-214ENST00000513989 MYO5AQ9Y4I1 1855 aaKnown RBP11.91□□□□□ -0.5
NEDD9-214ENST00000513989 PHIPQ8WWQ0 1821 aa11.91□□□□□ -0.5
NEDD9-214ENST00000513989 ALDH1A1P00352 501 aa11.91□□□□□ -0.5
NEDD9-214ENST00000513989 ATP2B2Q01814 1243 aa11.91□□□□□ -0.5
NEDD9-214ENST00000513989 CRHR2Q13324 411 aa11.91□□□□□ -0.5
NEDD9-214ENST00000513989 WTAPQ15007 396 aa11.91□□□□□ -0.5
NEDD9-214ENST00000513989 TMEM67Q5HYA8 995 aa11.91□□□□□ -0.5
NEDD9-214ENST00000513989 IFIT1BQ5T764 474 aaKnown RBP11.91□□□□□ -0.5
NEDD9-214ENST00000513989 NFXL1Q6ZNB6 911 aa11.91□□□□□ -0.5
NEDD9-214ENST00000513989 ERO1BQ86YB8 467 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms