RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 PASKQ96RG2 1323 aa12.36□□□□□ -0.43
LIMCH1-208ENST00000508501 GPC4O75487 556 aa12.36□□□□□ -0.43
LIMCH1-208ENST00000508501 TRIM31Q9BZY9 425 aa12.36□□□□□ -0.43
LIMCH1-208ENST00000508501 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.36□□□□□ -0.43
LIMCH1-208ENST00000508501 CAMSAP2Q08AD1 1489 aa12.36□□□□□ -0.43
LIMCH1-208ENST00000508501 APOA1P02647 267 aa12.36□□□□□ -0.43
LIMCH1-208ENST00000508501 KRT4P19013 534 aa12.36□□□□□ -0.43
LIMCH1-208ENST00000508501 E2F5Q15329 346 aa12.36□□□□□ -0.43
LIMCH1-208ENST00000508501 JADE1Q6IE81 842 aa12.36□□□□□ -0.43
LIMCH1-208ENST00000508501 GDAP1L1Q96MZ0 367 aa12.36□□□□□ -0.43
LIMCH1-208ENST00000508501 FAM8A1Q9UBU6 413 aa12.36□□□□□ -0.43
LIMCH1-208ENST00000508501 GOLGA8CPA6NN73 597 aa12.36□□□□□ -0.43
LIMCH1-208ENST00000508501 TTI1O43156 1089 aa12.36□□□□□ -0.43
LIMCH1-208ENST00000508501 PDE4DQ08499 809 aa12.36□□□□□ -0.43
LIMCH1-208ENST00000508501 TMEM132EQ6IEE7 984 aa12.36□□□□□ -0.43
LIMCH1-208ENST00000508501 NSMCE1Q8WV22 266 aa12.36□□□□□ -0.43
LIMCH1-208ENST00000508501 CDKL2Q92772 493 aa12.36□□□□□ -0.43
LIMCH1-208ENST00000508501 TMEM87BQ96K49 555 aa12.36□□□□□ -0.43
LIMCH1-208ENST00000508501 FNBP1Q96RU3 617 aa12.36□□□□□ -0.43
LIMCH1-208ENST00000508501 CTNND2Q9UQB3 1225 aa12.36□□□□□ -0.43
LIMCH1-208ENST00000508501 BICRAQ9NZM4 1560 aa12.36□□□□□ -0.43
LIMCH1-208ENST00000508501 TTC21BQ7Z4L5 1316 aa12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 SPDYE3A6NKU9 549 aa12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 RASGRF2O14827 1237 aa12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 PPP1R12AO14974 1030 aaPredicted RBP12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 YWHAEP62258 255 aaKnown RBP12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 RAD51AP2Q09MP3 1159 aa12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 BIRC2Q13490 618 aa12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 LARP6Q9BRS8 491 aaKnown RBP12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 POLR3CQ9BUI4 534 aaPredicted RBP12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 USP26Q9BXU7 913 aa12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 TRIM15Q9C019 465 aa12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 DCTPP1Q9H773 170 aa12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 TMOD4Q9NZQ9 345 aa12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 TOP2AP11388 1531 aaKnown RBP12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 RASSF10A6NK89 507 aa12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 STX1BP61266 288 aa12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 LCA5Q86VQ0 697 aa12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 SCHIP1Q9P0W5 487 aaPredicted RBP12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 PPP2R2CQ9Y2T4 447 aa12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 NUB1Q9Y5A7 615 aa12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 DNM2P50570 870 aa12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 STRN3Q13033 797 aa12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 MMEL1Q495T6 779 aa12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 SLFNL1Q499Z3 407 aa12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 CCDC184Q52MB2 194 aa12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 KDM2BQ8NHM5 1336 aa12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 KRIT1O00522 736 aa12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 DEXIO95424 95 aa12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 TSPY3P0CV98 308 aa12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 TSPY8P0CW00 308 aa12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 IL15P40933 162 aaPredicted RBP12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 CREB3L3Q68CJ9 461 aa12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 TEKT1Q969V4 418 aa12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 UPF3AQ9H1J1 476 aaKnown RBP12.35□□□□□ -0.43
LIMCH1-208ENST00000508501 IBTKQ9P2D0 1353 aaPredicted RBP12.34□□□□□ -0.43
LIMCH1-208ENST00000508501 NCOA2Q15596 1464 aa12.34□□□□□ -0.43
LIMCH1-208ENST00000508501 CFAP73A6NFT4 308 aa12.34□□□□□ -0.43
LIMCH1-208ENST00000508501 DCTN3O75935 186 aa12.34□□□□□ -0.43
LIMCH1-208ENST00000508501 HARSP12081 509 aaKnown RBP12.34□□□□□ -0.43
LIMCH1-208ENST00000508501 SMTNP53814 917 aa12.34□□□□□ -0.43
LIMCH1-208ENST00000508501 DCAF17Q5H9S7 520 aaPredicted RBP12.34□□□□□ -0.43
LIMCH1-208ENST00000508501 HIBCHQ6NVY1 386 aaPredicted RBP12.34□□□□□ -0.43
LIMCH1-208ENST00000508501 MIS18AQ9NYP9 233 aa12.34□□□□□ -0.43
LIMCH1-208ENST00000508501 THAP12O43422 761 aa12.34□□□□□ -0.43
LIMCH1-208ENST00000508501 ATP1A2P50993 1020 aa12.34□□□□□ -0.43
LIMCH1-208ENST00000508501 KPNA2P52292 529 aaKnown RBP12.34□□□□□ -0.43
LIMCH1-208ENST00000508501 HAND2P61296 217 aa12.34□□□□□ -0.43
LIMCH1-208ENST00000508501 PPP1R2P3Q6NXS1 205 aa12.34□□□□□ -0.43
LIMCH1-208ENST00000508501 C16orf87Q6PH81 154 aa12.34□□□□□ -0.43
LIMCH1-208ENST00000508501 SRRM1Q8IYB3 904 aaKnown RBP12.34□□□□□ -0.43
LIMCH1-208ENST00000508501 SLF1Q9BQI6 1058 aa12.34□□□□□ -0.43
LIMCH1-208ENST00000508501 SPC25Q9HBM1 224 aa12.34□□□□□ -0.43
LIMCH1-208ENST00000508501 KIF21BO75037 1637 aa12.34□□□□□ -0.43
LIMCH1-208ENST00000508501 HGSO14964 777 aaPredicted RBP12.34□□□□□ -0.43
LIMCH1-208ENST00000508501 DRP2Q13474 957 aa12.34□□□□□ -0.43
LIMCH1-208ENST00000508501 IQSEC3Q9UPP2 1182 aaPredicted RBP12.34□□□□□ -0.43
LIMCH1-208ENST00000508501 TERF2Q15554 542 aa12.34□□□□□ -0.43
LIMCH1-208ENST00000508501 FRMD3A2A2Y4 597 aa12.33□□□□□ -0.44
LIMCH1-208ENST00000508501 DCAF8L1A6NGE4 600 aa12.33□□□□□ -0.44
LIMCH1-208ENST00000508501 PLCG2P16885 1265 aa12.33□□□□□ -0.44
LIMCH1-208ENST00000508501 RBM6P78332 1123 aaKnown RBP12.33□□□□□ -0.44
LIMCH1-208ENST00000508501 LDHAL6AQ6ZMR3 332 aa12.33□□□□□ -0.44
LIMCH1-208ENST00000508501 NUDCD3Q8IVD9 361 aa12.33□□□□□ -0.44
LIMCH1-208ENST00000508501 SH2D4AQ9H788 454 aa12.33□□□□□ -0.44
LIMCH1-208ENST00000508501 VAT1LQ9HCJ6 419 aa12.33□□□□□ -0.44
LIMCH1-208ENST00000508501 LMBRD1Q9NUN5 540 aa12.33□□□□□ -0.44
LIMCH1-208ENST00000508501 RALGAPBQ86X10 1494 aa12.33□□□□□ -0.44
LIMCH1-208ENST00000508501 MCF2LO15068 1137 aa12.33□□□□□ -0.44
LIMCH1-208ENST00000508501 CCDC159P0C7I6 412 aa12.33□□□□□ -0.44
LIMCH1-208ENST00000508501 RWDD2BP57060 319 aa12.33□□□□□ -0.44
LIMCH1-208ENST00000508501 C6orf118Q5T5N4 469 aa12.33□□□□□ -0.44
LIMCH1-208ENST00000508501 CAPRIN2Q6IMN6 1127 aaKnown RBP12.33□□□□□ -0.44
LIMCH1-208ENST00000508501 PDZD4Q76G19 769 aaPredicted RBP12.33□□□□□ -0.44
LIMCH1-208ENST00000508501 MGARPQ8TDB4 240 aa12.33□□□□□ -0.44
LIMCH1-208ENST00000508501 BZW2Q9Y6E2 419 aaKnown RBP12.33□□□□□ -0.44
LIMCH1-208ENST00000508501 CCDC61Q9Y6R9 512 aa12.33□□□□□ -0.44
LIMCH1-208ENST00000508501 HNRNPCP07910 306 aaKnown RBP eCLIP12.33□□□□□ -0.44
LIMCH1-208ENST00000508501 NBPF20Q3BBV1 942 aa12.33□□□□□ -0.44
LIMCH1-208ENST00000508501 TPCN1Q9ULQ1 816 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms