RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 C22orf34Q6ZV56 151 aa9.61□□□□□ -0.87
SF3B1-212ENST00000496458 NKD1Q969G9 470 aa9.61□□□□□ -0.87
SF3B1-212ENST00000496458 NT5C1AQ9BXI3 368 aa9.61□□□□□ -0.87
SF3B1-212ENST00000496458 SNX11Q9Y5W9 270 aa9.61□□□□□ -0.87
SF3B1-212ENST00000496458 CD8BP10966 210 aa9.6□□□□□ -0.87
SF3B1-212ENST00000496458 CLCN7P51798 805 aa9.6□□□□□ -0.87
SF3B1-212ENST00000496458 RACK1P63244 317 aaKnown RBP9.6□□□□□ -0.87
SF3B1-212ENST00000496458 MLECQ14165 292 aa9.6□□□□□ -0.87
SF3B1-212ENST00000496458 CDKAL1Q5VV42 579 aa9.6□□□□□ -0.87
SF3B1-212ENST00000496458 PHACTR4Q8IZ21 702 aa9.6□□□□□ -0.87
SF3B1-212ENST00000496458 AGBL5Q8NDL9 886 aa9.6□□□□□ -0.87
SF3B1-212ENST00000496458 PPP1R13LQ8WUF5 828 aa9.6□□□□□ -0.87
SF3B1-212ENST00000496458 CEP131Q9UPN4 1083 aa9.6□□□□□ -0.87
SF3B1-212ENST00000496458 CAPN6Q9Y6Q1 641 aa9.6□□□□□ -0.87
SF3B1-212ENST00000496458 TNNI2P48788 182 aa9.59□□□□□ -0.87
SF3B1-212ENST00000496458 METTL16Q86W50 562 aaKnown RBP9.59□□□□□ -0.87
SF3B1-212ENST00000496458 COX4I2Q96KJ9 171 aa9.59□□□□□ -0.87
SF3B1-212ENST00000496458 DDX41Q9UJV9 622 aaKnown RBP9.59□□□□□ -0.87
SF3B1-212ENST00000496458 ATE1O95260 518 aa9.58□□□□□ -0.88
SF3B1-212ENST00000496458 IRAK1P51617 712 aa9.58□□□□□ -0.88
SF3B1-212ENST00000496458 HDLBPQ00341 1268 aaKnown RBP9.58□□□□□ -0.88
SF3B1-212ENST00000496458 CLCQ05315 142 aa9.58□□□□□ -0.88
SF3B1-212ENST00000496458 PLCL1Q15111 1095 aa9.58□□□□□ -0.88
SF3B1-212ENST00000496458 C9orf131Q5VYM1 1079 aa9.58□□□□□ -0.88
SF3B1-212ENST00000496458 SLITRK4Q8IW52 837 aa9.58□□□□□ -0.88
SF3B1-212ENST00000496458 BAHD1Q8TBE0 780 aaPredicted RBP9.58□□□□□ -0.88
SF3B1-212ENST00000496458 H3BS24 57 aa9.57□□□□□ -0.88
SF3B1-212ENST00000496458 KIR3DL1P43629 444 aa9.57□□□□□ -0.88
SF3B1-212ENST00000496458 ZNF165P49910 485 aa9.57□□□□□ -0.88
SF3B1-212ENST00000496458 ARSHQ5FYA8 562 aa9.57□□□□□ -0.88
SF3B1-212ENST00000496458 ASB11Q8WXH4 323 aa9.57□□□□□ -0.88
SF3B1-212ENST00000496458 CCDC74BQ96LY2 380 aa9.57□□□□□ -0.88
SF3B1-212ENST00000496458 HSPA12BQ96MM6 686 aa9.57□□□□□ -0.88
SF3B1-212ENST00000496458 EHMT1Q9H9B1 1298 aa9.57□□□□□ -0.88
SF3B1-212ENST00000496458 PODXL2Q9NZ53 605 aa9.57□□□□□ -0.88
SF3B1-212ENST00000496458 GMIPQ9P107 970 aa9.57□□□□□ -0.88
SF3B1-212ENST00000496458 PITPNM2Q9BZ72 1349 aa9.56□□□□□ -0.88
SF3B1-212ENST00000496458 SLC22A31A6NKX4 558 aa9.56□□□□□ -0.88
SF3B1-212ENST00000496458 TNK2Q07912 1038 aa9.56□□□□□ -0.88
SF3B1-212ENST00000496458 IKZF1Q13422 519 aa9.56□□□□□ -0.88
SF3B1-212ENST00000496458 ANGEL2Q5VTE6 544 aaKnown RBP9.56□□□□□ -0.88
SF3B1-212ENST00000496458 OVOS1Q6IE37 1185 aa9.56□□□□□ -0.88
SF3B1-212ENST00000496458 NT5DC4Q86YG4 428 aa9.56□□□□□ -0.88
SF3B1-212ENST00000496458 REXO1Q8N1G1 1221 aaKnown RBP9.56□□□□□ -0.88
SF3B1-212ENST00000496458 ZNF428Q96B54 188 aa9.56□□□□□ -0.88
SF3B1-212ENST00000496458 KIF2CQ99661 725 aa9.56□□□□□ -0.88
SF3B1-212ENST00000496458 ADGRE2Q9UHX3 823 aa9.56□□□□□ -0.88
SF3B1-212ENST00000496458 RAG1P15918 1043 aa9.55□□□□□ -0.88
SF3B1-212ENST00000496458 FUT4P22083 530 aa9.55□□□□□ -0.88
SF3B1-212ENST00000496458 ZNF654Q8IZM8 581 aa9.55□□□□□ -0.88
SF3B1-212ENST00000496458 Q96M66 194 aa9.55□□□□□ -0.88
SF3B1-212ENST00000496458 ST14Q9Y5Y6 855 aa9.55□□□□□ -0.88
SF3B1-212ENST00000496458 GBP1P32455 592 aa9.54□□□□□ -0.88
SF3B1-212ENST00000496458 ATP13A1Q9HD20 1204 aa9.54□□□□□ -0.88
SF3B1-212ENST00000496458 SEMA3GQ9NS98 782 aa9.54□□□□□ -0.88
SF3B1-212ENST00000496458 RNF141Q8WVD5 230 aa9.53□□□□□ -0.88
SF3B1-212ENST00000496458 KREMEN1Q96MU8 473 aa9.53□□□□□ -0.88
SF3B1-212ENST00000496458 ANTXR1Q9H6X2 564 aa9.53□□□□□ -0.88
SF3B1-212ENST00000496458 RGS13O14921 159 aa9.52□□□□□ -0.89
SF3B1-212ENST00000496458 POLR2BP30876 1174 aaKnown RBP9.52□□□□□ -0.89
SF3B1-212ENST00000496458 CHMP4BP1P59074 171 aa9.52□□□□□ -0.89
SF3B1-212ENST00000496458 PAK2Q13177 524 aa9.52□□□□□ -0.89
SF3B1-212ENST00000496458 ZNF792Q3KQV3 632 aa9.52□□□□□ -0.89
SF3B1-212ENST00000496458 MCTP1Q6DN14 999 aa9.52□□□□□ -0.89
SF3B1-212ENST00000496458 PIWIL2Q8TC59 973 aaKnown RBP9.52□□□□□ -0.89
SF3B1-212ENST00000496458 ATG4CQ96DT6 458 aa9.52□□□□□ -0.89
SF3B1-212ENST00000496458 ZSWIM5Q9P217 1185 aa9.52□□□□□ -0.89
SF3B1-212ENST00000496458 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.52□□□□□ -0.89
SF3B1-212ENST00000496458 ZP2Q05996 745 aa9.51□□□□□ -0.89
SF3B1-212ENST00000496458 CDCP2Q5VXM1 449 aa9.51□□□□□ -0.89
SF3B1-212ENST00000496458 CBLL1Q75N03 491 aa9.51□□□□□ -0.89
SF3B1-212ENST00000496458 NLRC3Q7RTR2 1065 aa9.51□□□□□ -0.89
SF3B1-212ENST00000496458 DTWD2Q8NBA8 298 aa9.51□□□□□ -0.89
SF3B1-212ENST00000496458 PI4K2BQ8TCG2 481 aa9.51□□□□□ -0.89
SF3B1-212ENST00000496458 TMEM40Q8WWA1 233 aa9.51□□□□□ -0.89
SF3B1-212ENST00000496458 UBE2FQ969M7 185 aa9.51□□□□□ -0.89
SF3B1-212ENST00000496458 CNNM2Q9H8M5 875 aa9.51□□□□□ -0.89
SF3B1-212ENST00000496458 PRDM7Q9NQW5 492 aa9.51□□□□□ -0.89
SF3B1-212ENST00000496458 ADAMTS6Q9UKP5 1117 aa9.51□□□□□ -0.89
SF3B1-212ENST00000496458 LRRN2O75325 713 aa9.5□□□□□ -0.89
SF3B1-212ENST00000496458 UBOX5O94941 541 aa9.5□□□□□ -0.89
SF3B1-212ENST00000496458 TAL1P17542 331 aaPredicted RBP9.5□□□□□ -0.89
SF3B1-212ENST00000496458 LRRFIP1Q32MZ4 808 aaKnown RBP9.5□□□□□ -0.89
SF3B1-212ENST00000496458 THAP5Q7Z6K1 395 aa9.5□□□□□ -0.89
SF3B1-212ENST00000496458 FERD3LQ96RJ6 166 aa9.5□□□□□ -0.89
SF3B1-212ENST00000496458 ASPNQ9BXN1 380 aa9.5□□□□□ -0.89
SF3B1-212ENST00000496458 KCNH3Q9ULD8 1083 aa9.5□□□□□ -0.89
SF3B1-212ENST00000496458 ZNRF3Q9ULT6 936 aa9.5□□□□□ -0.89
SF3B1-212ENST00000496458 COL17A1Q9UMD9 1497 aaPredicted RBP9.5□□□□□ -0.89
SF3B1-212ENST00000496458 MEIS3P2A8K0S8 358 aa9.49□□□□□ -0.89
SF3B1-212ENST00000496458 CARS2Q9HA77 564 aaKnown RBP9.49□□□□□ -0.89
SF3B1-212ENST00000496458 RC3H2Q9HBD1 1191 aaKnown RBP9.49□□□□□ -0.89
SF3B1-212ENST00000496458 MBNL3Q9NUK0 354 aaKnown RBP9.49□□□□□ -0.89
SF3B1-212ENST00000496458 PPT2Q9UMR5 302 aa9.49□□□□□ -0.89
SF3B1-212ENST00000496458 RNASE1P07998 156 aaKnown RBP9.48□□□□□ -0.89
SF3B1-212ENST00000496458 NME1P15531 152 aaKnown RBP9.48□□□□□ -0.89
SF3B1-212ENST00000496458 RBM25P49756 843 aaKnown RBP9.48□□□□□ -0.89
SF3B1-212ENST00000496458 FBXW10Q5XX13 1052 aa9.48□□□□□ -0.89
SF3B1-212ENST00000496458 SLC23A3Q6PIS1 610 aa9.48□□□□□ -0.89
SF3B1-212ENST00000496458 WASH4PA8MWX3 477 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms