RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 FAM43AQ8N2R8 423 aa8.02□□□□□ -1.13
USP39-219ENST00000496047 NSUN4Q96CB9 384 aaKnown RBP8.02□□□□□ -1.13
USP39-219ENST00000496047 CCDC34Q96HJ3 373 aa8.02□□□□□ -1.13
USP39-219ENST00000496047 EYA3Q99504 573 aa8.02□□□□□ -1.13
USP39-219ENST00000496047 LRRC4BQ9NT99 713 aa8.02□□□□□ -1.13
USP39-219ENST00000496047 BRPF3Q9ULD4 1205 aa8.02□□□□□ -1.13
USP39-219ENST00000496047 TNKSO95271 1327 aa8.02□□□□□ -1.13
USP39-219ENST00000496047 A0A0G2JLW4 131 aa8.01□□□□□ -1.13
USP39-219ENST00000496047 TSPY2A6NKD2 308 aa8.01□□□□□ -1.13
USP39-219ENST00000496047 TK2O00142 265 aa8.01□□□□□ -1.13
USP39-219ENST00000496047 MAP3K7O43318 606 aa8.01□□□□□ -1.13
USP39-219ENST00000496047 RANBP6O60518 1105 aaKnown RBP8.01□□□□□ -1.13
USP39-219ENST00000496047 FMNL1O95466 1100 aaPredicted RBP8.01□□□□□ -1.13
USP39-219ENST00000496047 CTDNEP1O95476 244 aa8.01□□□□□ -1.13
USP39-219ENST00000496047 APBA3O96018 575 aa8.01□□□□□ -1.13
USP39-219ENST00000496047 IFNAR1P17181 557 aa8.01□□□□□ -1.13
USP39-219ENST00000496047 MSNP26038 577 aaKnown RBP8.01□□□□□ -1.13
USP39-219ENST00000496047 ME1P48163 572 aa8.01□□□□□ -1.13
USP39-219ENST00000496047 SBK1Q52WX2 424 aa8.01□□□□□ -1.13
USP39-219ENST00000496047 GAS2L3Q86XJ1 694 aa8.01□□□□□ -1.13
USP39-219ENST00000496047 ZNF654Q8IZM8 581 aa8.01□□□□□ -1.13
USP39-219ENST00000496047 FBXO18Q8NFZ0 1043 aa8.01□□□□□ -1.13
USP39-219ENST00000496047 TDRD7Q8NHU6 1098 aaKnown RBP8.01□□□□□ -1.13
USP39-219ENST00000496047 CTCFLQ8NI51 663 aaPredicted RBP8.01□□□□□ -1.13
USP39-219ENST00000496047 IGDCC4Q8TDY8 1250 aa8.01□□□□□ -1.13
USP39-219ENST00000496047 SDR42E1Q8WUS8 393 aa8.01□□□□□ -1.13
USP39-219ENST00000496047 RIOK1Q9BRS2 568 aaKnown RBP8.01□□□□□ -1.13
USP39-219ENST00000496047 SLC26A6Q9BXS9 759 aa8.01□□□□□ -1.13
USP39-219ENST00000496047 NBPF3Q9H094 633 aa8.01□□□□□ -1.13
USP39-219ENST00000496047 AATFQ9NY61 560 aaKnown RBP eCLIP8.01□□□□□ -1.13
USP39-219ENST00000496047 PODXL2Q9NZ53 605 aa8.01□□□□□ -1.13
USP39-219ENST00000496047 ZSWIM5Q9P217 1185 aa8.01□□□□□ -1.13
USP39-219ENST00000496047 NSFL1CQ9UNZ2 370 aaKnown RBP8.01□□□□□ -1.13
USP39-219ENST00000496047 CEP131Q9UPN4 1083 aa8.01□□□□□ -1.13
USP39-219ENST00000496047 MROH7-TTC4A0A0A0MT08 1334 aa8.01□□□□□ -1.13
USP39-219ENST00000496047 ROBO3Q96MS0 1386 aa8□□□□□ -1.13
USP39-219ENST00000496047 GOLGA6L6A8MZA4 724 aa8□□□□□ -1.13
USP39-219ENST00000496047 C6orf229H3BNL8 230 aa8□□□□□ -1.13
USP39-219ENST00000496047 POLRMTO00411 1230 aaKnown RBP8□□□□□ -1.13
USP39-219ENST00000496047 PRKAB2O43741 272 aa8□□□□□ -1.13
USP39-219ENST00000496047 ORC4O43929 436 aa8□□□□□ -1.13
USP39-219ENST00000496047 PTMAP06454 111 aaKnown RBP8□□□□□ -1.13
USP39-219ENST00000496047 NPR1P16066 1061 aa8□□□□□ -1.13
USP39-219ENST00000496047 TM4SF1P30408 202 aa8□□□□□ -1.13
USP39-219ENST00000496047 HOXA10P31260 410 aaPredicted RBP8□□□□□ -1.13
USP39-219ENST00000496047 KIF5BP33176 963 aa8□□□□□ -1.13
USP39-219ENST00000496047 GUCY1B3Q02153 619 aa8□□□□□ -1.13
USP39-219ENST00000496047 TMEM132AQ24JP5 1023 aa8□□□□□ -1.13
USP39-219ENST00000496047 HS1BP3Q53T59 392 aa8□□□□□ -1.13
USP39-219ENST00000496047 MYSM1Q5VVJ2 828 aa8□□□□□ -1.13
USP39-219ENST00000496047 SP8Q8IXZ3 490 aa8□□□□□ -1.13
USP39-219ENST00000496047 CCDC24Q8N4L8 307 aa8□□□□□ -1.13
USP39-219ENST00000496047 NUP133Q8WUM0 1156 aa8□□□□□ -1.13
USP39-219ENST00000496047 MRPS27Q92552 414 aaKnown RBP8□□□□□ -1.13
USP39-219ENST00000496047 CHAMP1Q96JM3 812 aa8□□□□□ -1.13
USP39-219ENST00000496047 PPP1R9BQ96SB3 815 aa8□□□□□ -1.13
USP39-219ENST00000496047 ZSCAN10Q96SZ4 725 aaPredicted RBP8□□□□□ -1.13
USP39-219ENST00000496047 RNF26Q9BY78 433 aaPredicted RBP8□□□□□ -1.13
USP39-219ENST00000496047 PANK2Q9BZ23 570 aa8□□□□□ -1.13
USP39-219ENST00000496047 CLSTN2Q9H4D0 955 aa8□□□□□ -1.13
USP39-219ENST00000496047 POLR3EQ9NVU0 708 aa8□□□□□ -1.13
USP39-219ENST00000496047 RTEL1Q9NZ71 1219 aa8□□□□□ -1.13
USP39-219ENST00000496047 TFIP11Q9UBB9 837 aaKnown RBP8□□□□□ -1.13
USP39-219ENST00000496047 CCDC39Q9UFE4 941 aa8□□□□□ -1.13
USP39-219ENST00000496047 HPS5Q9UPZ3 1129 aa8□□□□□ -1.13
USP39-219ENST00000496047 SUGT1Q9Y2Z0 365 aa8□□□□□ -1.13
USP39-219ENST00000496047 ZNF646O15015 1829 aaPredicted RBP7.99□□□□□ -1.13
USP39-219ENST00000496047 SLX4Q8IY92 1834 aa7.99□□□□□ -1.13
USP39-219ENST00000496047 KIF13BQ9NQT8 1826 aa7.99□□□□□ -1.13
USP39-219ENST00000496047 BMP15O95972 392 aa7.99□□□□□ -1.13
USP39-219ENST00000496047 POLR3DP05423 398 aaPredicted RBP7.99□□□□□ -1.13
USP39-219ENST00000496047 IL1R1P14778 569 aa7.99□□□□□ -1.13
USP39-219ENST00000496047 PRDX5P30044 214 aa7.99□□□□□ -1.13
USP39-219ENST00000496047 GNAQP50148 359 aa7.99□□□□□ -1.13
USP39-219ENST00000496047 DYNLL1P63167 89 aaKnown RBP7.99□□□□□ -1.13
USP39-219ENST00000496047 TPM4P67936 248 aa7.99□□□□□ -1.13
USP39-219ENST00000496047 GPSM2P81274 684 aa7.99□□□□□ -1.13
USP39-219ENST00000496047 CEBPZQ03701 1054 aaKnown RBP7.99□□□□□ -1.13
USP39-219ENST00000496047 COL9A3Q14050 684 aaPredicted RBP7.99□□□□□ -1.13
USP39-219ENST00000496047 EZH2Q15910 746 aaKnown RBP7.99□□□□□ -1.13
USP39-219ENST00000496047 PPP4R3BQ5MIZ7 849 aa7.99□□□□□ -1.13
USP39-219ENST00000496047 SMIM5Q71RC9 77 aa7.99□□□□□ -1.13
USP39-219ENST00000496047 CCAR1Q8IX12 1150 aaKnown RBP7.99□□□□□ -1.13
USP39-219ENST00000496047 CAMKK2Q96RR4 588 aa7.99□□□□□ -1.13
USP39-219ENST00000496047 COA1Q9GZY4 146 aa7.99□□□□□ -1.13
USP39-219ENST00000496047 RBSNQ9H1K0 784 aa7.99□□□□□ -1.13
USP39-219ENST00000496047 KAT14Q9H8E8 782 aa7.99□□□□□ -1.13
USP39-219ENST00000496047 MKNK2Q9HBH9 465 aa7.99□□□□□ -1.13
USP39-219ENST00000496047 CD209Q9NNX6 404 aa7.99□□□□□ -1.13
USP39-219ENST00000496047 DCP1AQ9NPI6 582 aaPredicted RBP7.99□□□□□ -1.13
USP39-219ENST00000496047 MCM9Q9NXL9 1143 aa7.99□□□□□ -1.13
USP39-219ENST00000496047 DACT1Q9NYF0 836 aa7.99□□□□□ -1.13
USP39-219ENST00000496047 BAZ2BQ9UIF8 2168 aaKnown RBP7.99□□□□□ -1.13
USP39-219ENST00000496047 HOOK1Q9UJC3 728 aaKnown RBP7.99□□□□□ -1.13
USP39-219ENST00000496047 RCOR1Q9UKL0 485 aa7.99□□□□□ -1.13
USP39-219ENST00000496047 NOL7Q9UMY1 257 aaKnown RBP7.99□□□□□ -1.13
USP39-219ENST00000496047 A0A1W2PQ27 194 aa7.98□□□□□ -1.13
USP39-219ENST00000496047 A0A1W2PQ64 194 aa7.98□□□□□ -1.13
USP39-219ENST00000496047 A0A1W2PQD8 194 aa7.98□□□□□ -1.13
USP39-219ENST00000496047 USP17L12C9JPN9 530 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms