RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 ZMYM1Q5SVZ6 1142 aa29.6■■■□□ 2.33
UPF3A-209ENST00000492270 USP17L2Q6R6M4 530 aa29.6■■■□□ 2.33
UPF3A-209ENST00000492270 C16orf86Q6ZW13 317 aa29.6■■■□□ 2.33
UPF3A-209ENST00000492270 CHD1LQ86WJ1 897 aa29.6■■■□□ 2.33
UPF3A-209ENST00000492270 ARPP21Q9UBL0 812 aaPredicted RBP29.6■■■□□ 2.33
UPF3A-209ENST00000492270 CLEC10AQ8IUN9 316 aa29.59■■■□□ 2.33
UPF3A-209ENST00000492270 HOXA7P31268 230 aaPredicted RBP29.58■■■□□ 2.33
UPF3A-209ENST00000492270 EVI5LQ96CN4 794 aa29.58■■■□□ 2.33
UPF3A-209ENST00000492270 GNRH1P01148 92 aa29.57■■■□□ 2.32
UPF3A-209ENST00000492270 RGS19P49795 217 aa29.57■■■□□ 2.32
UPF3A-209ENST00000492270 IRX3P78415 501 aaPredicted RBP29.57■■■□□ 2.32
UPF3A-209ENST00000492270 GIMAP6Q6P9H5 292 aa29.57■■■□□ 2.32
UPF3A-209ENST00000492270 C12orf42Q96LP6 360 aa29.57■■■□□ 2.32
UPF3A-209ENST00000492270 P2RX7Q99572 595 aaKnown RBP29.57■■■□□ 2.32
UPF3A-209ENST00000492270 KIAA1683Q9H0B3 1180 aa29.57■■■□□ 2.32
UPF3A-209ENST00000492270 SRRDQ9UH36 339 aa29.57■■■□□ 2.32
UPF3A-209ENST00000492270 TAOK2Q9UL54 1235 aa29.57■■■□□ 2.32
UPF3A-209ENST00000492270 A0A1W2PRG0 241 aa29.56■■■□□ 2.32
UPF3A-209ENST00000492270 GNAT2P19087 354 aa29.56■■■□□ 2.32
UPF3A-209ENST00000492270 FCGRTP55899 365 aa29.56■■■□□ 2.32
UPF3A-209ENST00000492270 FAM110CQ1W6H9 321 aa29.56■■■□□ 2.32
UPF3A-209ENST00000492270 SBK1Q52WX2 424 aa29.56■■■□□ 2.32
UPF3A-209ENST00000492270 CCDC129Q6ZRS4 1044 aa29.56■■■□□ 2.32
UPF3A-209ENST00000492270 TMEM179Q6ZVK1 233 aa29.56■■■□□ 2.32
UPF3A-209ENST00000492270 PLEKHM2Q8IWE5 1019 aa29.56■■■□□ 2.32
UPF3A-209ENST00000492270 STK11IPQ8N1F8 1099 aa29.56■■■□□ 2.32
UPF3A-209ENST00000492270 ROBO3Q96MS0 1386 aa29.55■■■□□ 2.32
UPF3A-209ENST00000492270 PARP14Q460N5 1801 aa29.55■■■□□ 2.32
UPF3A-209ENST00000492270 MYPNQ86TC9 1320 aa29.55■■■□□ 2.32
UPF3A-209ENST00000492270 MINDY4BA8MYZ0 360 aa29.55■■■□□ 2.32
UPF3A-209ENST00000492270 PEX10O60683 326 aa29.55■■■□□ 2.32
UPF3A-209ENST00000492270 APPP05067 770 aa29.55■■■□□ 2.32
UPF3A-209ENST00000492270 GCLCP48506 637 aaPredicted RBP29.55■■■□□ 2.32
UPF3A-209ENST00000492270 TDO2P48775 406 aa29.55■■■□□ 2.32
UPF3A-209ENST00000492270 ARMC5Q96C12 935 aa29.55■■■□□ 2.32
UPF3A-209ENST00000492270 PLXNB2O15031 1838 aa29.55■■■□□ 2.32
UPF3A-209ENST00000492270 USP14P54578 494 aa29.54■■■□□ 2.32
UPF3A-209ENST00000492270 HERVK_113P62684 666 aa29.54■■■□□ 2.32
UPF3A-209ENST00000492270 SLC9C1Q4G0N8 1177 aa29.54■■■□□ 2.32
UPF3A-209ENST00000492270 IFNL3Q8IZI9 196 aa29.54■■■□□ 2.32
UPF3A-209ENST00000492270 RLFQ13129 1914 aa29.53■■■□□ 2.32
UPF3A-209ENST00000492270 MYH4Q9Y623 1939 aa29.53■■■□□ 2.32
UPF3A-209ENST00000492270 PATL2C9JE40 543 aaKnown RBP29.53■■■□□ 2.32
UPF3A-209ENST00000492270 VCAM1P19320 739 aa29.53■■■□□ 2.32
UPF3A-209ENST00000492270 PRMT2P55345 433 aa29.53■■■□□ 2.32
UPF3A-209ENST00000492270 PRKCZQ05513 592 aa29.53■■■□□ 2.32
UPF3A-209ENST00000492270 SH3TC2Q8TF17 1288 aa29.53■■■□□ 2.32
UPF3A-209ENST00000492270 GABRQQ9UN88 632 aa29.53■■■□□ 2.32
UPF3A-209ENST00000492270 TNRC18O15417 2968 aaPredicted RBP29.52■■■□□ 2.32
UPF3A-209ENST00000492270 SIAH1Q8IUQ4 282 aa29.52■■■□□ 2.32
UPF3A-209ENST00000492270 CCDC17Q96LX7 622 aa29.52■■■□□ 2.32
UPF3A-209ENST00000492270 TRIM6-TRIM34B2RNG4 842 aa29.51■■■□□ 2.31
UPF3A-209ENST00000492270 TNPO2O14787 897 aaKnown RBP29.51■■■□□ 2.31
UPF3A-209ENST00000492270 FOXP2O15409 715 aa29.51■■■□□ 2.31
UPF3A-209ENST00000492270 HOXD10P28358 340 aa29.51■■■□□ 2.31
UPF3A-209ENST00000492270 ICA1Q05084 483 aa29.51■■■□□ 2.31
UPF3A-209ENST00000492270 POTEEQ6S8J3 1075 aa29.51■■■□□ 2.31
UPF3A-209ENST00000492270 ZNF333Q96JL9 665 aa29.51■■■□□ 2.31
UPF3A-209ENST00000492270 TXNRD2Q9NNW7 524 aa29.51■■■□□ 2.31
UPF3A-209ENST00000492270 RILPL2Q969X0 211 aa29.5■■■□□ 2.31
UPF3A-209ENST00000492270 FAM227BQ96M60 508 aa29.5■■■□□ 2.31
UPF3A-209ENST00000492270 OSBPL3Q9H4L5 887 aa29.5■■■□□ 2.31
UPF3A-209ENST00000492270 MORF4L1Q9UBU8 362 aa29.5■■■□□ 2.31
UPF3A-209ENST00000492270 KIAA0100Q14667 2235 aaKnown RBP29.5■■■□□ 2.31
UPF3A-209ENST00000492270 BRCA2P51587 3418 aa29.5■■■□□ 2.31
UPF3A-209ENST00000492270 A0A0D9SFI3 127 aa29.49■■■□□ 2.31
UPF3A-209ENST00000492270 USP17L15C9J2P7 530 aa29.49■■■□□ 2.31
UPF3A-209ENST00000492270 USP17L13C9JLJ4 530 aa29.49■■■□□ 2.31
UPF3A-209ENST00000492270 USP17L11C9JVI0 530 aa29.49■■■□□ 2.31
UPF3A-209ENST00000492270 USP17L18D6R9N7 530 aa29.49■■■□□ 2.31
UPF3A-209ENST00000492270 USP17L22D6RA61 530 aa29.49■■■□□ 2.31
UPF3A-209ENST00000492270 USP17L17D6RBQ6 530 aa29.49■■■□□ 2.31
UPF3A-209ENST00000492270 USP17L19D6RCP7 530 aa29.49■■■□□ 2.31
UPF3A-209ENST00000492270 USP17L20D6RJB6 530 aa29.49■■■□□ 2.31
UPF3A-209ENST00000492270 RASA1P20936 1047 aa29.49■■■□□ 2.31
UPF3A-209ENST00000492270 MLLT1Q03111 559 aaPredicted RBP29.49■■■□□ 2.31
UPF3A-209ENST00000492270 USP17L24Q0WX57 530 aa29.49■■■□□ 2.31
UPF3A-209ENST00000492270 KIAA1755Q5JYT7 1200 aa29.49■■■□□ 2.31
UPF3A-209ENST00000492270 RAET1EQ8TD07 263 aa29.49■■■□□ 2.31
UPF3A-209ENST00000492270 RPAP3Q9H6T3 665 aaPredicted RBP29.49■■■□□ 2.31
UPF3A-209ENST00000492270 A0A0G2JMZ2 1700 aa29.48■■■□□ 2.31
UPF3A-209ENST00000492270 MYCP01106 439 aaPredicted RBP29.48■■■□□ 2.31
UPF3A-209ENST00000492270 CATSPERGQ6ZRH7 1159 aa29.48■■■□□ 2.31
UPF3A-209ENST00000492270 NACAP1Q9BZK3 213 aa29.48■■■□□ 2.31
UPF3A-209ENST00000492270 NAPBQ9H115 298 aa29.48■■■□□ 2.31
UPF3A-209ENST00000492270 RBPJLQ9UBG7 517 aa29.48■■■□□ 2.31
UPF3A-209ENST00000492270 POTEFA5A3E0 1075 aa29.47■■■□□ 2.31
UPF3A-209ENST00000492270 VPS53Q5VIR6 699 aa29.47■■■□□ 2.31
UPF3A-209ENST00000492270 PAGR1Q9BTK6 254 aa29.47■■■□□ 2.31
UPF3A-209ENST00000492270 GNL3Q9BVP2 549 aaKnown RBP eCLIP29.47■■■□□ 2.31
UPF3A-209ENST00000492270 MKNK2Q9HBH9 465 aa29.47■■■□□ 2.31
UPF3A-209ENST00000492270 ARHGEF10LQ9HCE6 1279 aa29.47■■■□□ 2.31
UPF3A-209ENST00000492270 HELLSQ9NRZ9 838 aa29.47■■■□□ 2.31
UPF3A-209ENST00000492270 COL11A1P12107 1806 aaPredicted RBP29.46■■■□□ 2.31
UPF3A-209ENST00000492270 PRDM1O75626 825 aa29.46■■■□□ 2.31
UPF3A-209ENST00000492270 PDE4AP27815 886 aa29.46■■■□□ 2.31
UPF3A-209ENST00000492270 FLT3LGP49771 235 aa29.46■■■□□ 2.31
UPF3A-209ENST00000492270 NMIQ13287 307 aaPredicted RBP29.46■■■□□ 2.31
UPF3A-209ENST00000492270 NBPF11Q86T75 865 aa29.46■■■□□ 2.31
UPF3A-209ENST00000492270 TMX2Q9Y320 296 aa29.46■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms