RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.88□□□□□ -1.31
VPS41-214ENST00000490924 ZNF335Q9H4Z2 1342 aaPredicted RBP6.87□□□□□ -1.31
VPS41-214ENST00000490924 PI4KAP2A4QPH2 592 aa6.87□□□□□ -1.31
VPS41-214ENST00000490924 GRM8O00222 908 aa6.87□□□□□ -1.31
VPS41-214ENST00000490924 PIK3CDO00329 1044 aa6.87□□□□□ -1.31
VPS41-214ENST00000490924 RGS9O75916 674 aaPredicted RBP6.87□□□□□ -1.31
VPS41-214ENST00000490924 ADCY5O95622 1261 aa6.87□□□□□ -1.31
VPS41-214ENST00000490924 IFIT2P09913 472 aaKnown RBP6.87□□□□□ -1.31
VPS41-214ENST00000490924 CASTP20810 708 aaKnown RBP6.87□□□□□ -1.31
VPS41-214ENST00000490924 FAM193AP78312 1265 aa6.87□□□□□ -1.31
VPS41-214ENST00000490924 CHAF1AQ13111 956 aaPredicted RBP6.87□□□□□ -1.31
VPS41-214ENST00000490924 LRP8Q14114 963 aa6.87□□□□□ -1.31
VPS41-214ENST00000490924 MAP3K11Q16584 847 aa6.87□□□□□ -1.31
VPS41-214ENST00000490924 UTP14CQ5TAP6 766 aaKnown RBP6.87□□□□□ -1.31
VPS41-214ENST00000490924 CCDC102BQ68D86 513 aa6.87□□□□□ -1.31
VPS41-214ENST00000490924 SARM1Q6SZW1 724 aa6.87□□□□□ -1.31
VPS41-214ENST00000490924 RAB44Q7Z6P3 723 aaPredicted RBP6.87□□□□□ -1.31
VPS41-214ENST00000490924 PDCL2Q8N4E4 241 aa6.87□□□□□ -1.31
VPS41-214ENST00000490924 PI4KAP1Q8N8J0 262 aa6.87□□□□□ -1.31
VPS41-214ENST00000490924 KIAA1524Q8TCG1 905 aa6.87□□□□□ -1.31
VPS41-214ENST00000490924 TP53INP1Q96A56 240 aa6.87□□□□□ -1.31
VPS41-214ENST00000490924 PHACTR1Q9C0D0 580 aa6.87□□□□□ -1.31
VPS41-214ENST00000490924 COPRSQ9NQ92 184 aa6.87□□□□□ -1.31
VPS41-214ENST00000490924 DDX21Q9NR30 783 aaKnown RBP eCLIP6.87□□□□□ -1.31
VPS41-214ENST00000490924 MIS18AQ9NYP9 233 aa6.87□□□□□ -1.31
VPS41-214ENST00000490924 R3HCC1Q9Y3T6 440 aaKnown RBP6.87□□□□□ -1.31
VPS41-214ENST00000490924 AK9Q5TCS8 1911 aa6.86□□□□□ -1.31
VPS41-214ENST00000490924 CTIFO43310 598 aaKnown RBP6.86□□□□□ -1.31
VPS41-214ENST00000490924 GADD45BO75293 160 aaPredicted RBP6.86□□□□□ -1.31
VPS41-214ENST00000490924 NBPF7P0C2Y1 421 aaPredicted RBP6.86□□□□□ -1.31
VPS41-214ENST00000490924 ATP5JP18859 108 aa6.86□□□□□ -1.31
VPS41-214ENST00000490924 RPS6KB1P23443 525 aa6.86□□□□□ -1.31
VPS41-214ENST00000490924 GJB2P29033 226 aa6.86□□□□□ -1.31
VPS41-214ENST00000490924 KCNQ4P56696 695 aa6.86□□□□□ -1.31
VPS41-214ENST00000490924 PIP4K2BP78356 416 aa6.86□□□□□ -1.31
VPS41-214ENST00000490924 XPCQ01831 940 aaPredicted RBP6.86□□□□□ -1.31
VPS41-214ENST00000490924 CREB3L3Q68CJ9 461 aa6.86□□□□□ -1.31
VPS41-214ENST00000490924 NAA16Q6N069 864 aaPredicted RBP6.86□□□□□ -1.31
VPS41-214ENST00000490924 LARP1Q6PKG0 1096 aaKnown RBP6.86□□□□□ -1.31
VPS41-214ENST00000490924 DEPDC4Q8N2C3 294 aa6.86□□□□□ -1.31
VPS41-214ENST00000490924 ABTB2Q8N961 1025 aa6.86□□□□□ -1.31
VPS41-214ENST00000490924 TDRD7Q8NHU6 1098 aaKnown RBP6.86□□□□□ -1.31
VPS41-214ENST00000490924 CCDC94Q9BW85 323 aaPredicted RBP6.86□□□□□ -1.31
VPS41-214ENST00000490924 NUP62CLQ9H1M0 184 aa6.86□□□□□ -1.31
VPS41-214ENST00000490924 GPR108Q9NPR9 543 aa6.86□□□□□ -1.31
VPS41-214ENST00000490924 CHPF2Q9P2E5 772 aa6.86□□□□□ -1.31
VPS41-214ENST00000490924 CFAP45Q9UL16 551 aa6.86□□□□□ -1.31
VPS41-214ENST00000490924 ZNF142P52746 1687 aaPredicted RBP6.86□□□□□ -1.31
VPS41-214ENST00000490924 NPHP4O75161 1426 aaPredicted RBP6.85□□□□□ -1.31
VPS41-214ENST00000490924 SIPA1L3O60292 1781 aaPredicted RBP6.85□□□□□ -1.31
VPS41-214ENST00000490924 ABCC12Q96J65 1359 aa6.85□□□□□ -1.31
VPS41-214ENST00000490924 A0A0A0MRY4 1105 aa6.85□□□□□ -1.31
VPS41-214ENST00000490924 PALM3A6NDB9 673 aaPredicted RBP6.85□□□□□ -1.31
VPS41-214ENST00000490924 BTBD11A6QL63 1104 aa6.85□□□□□ -1.31
VPS41-214ENST00000490924 KIF2AO00139 706 aaPredicted RBP6.85□□□□□ -1.31
VPS41-214ENST00000490924 RNMTO43148 476 aaKnown RBP6.85□□□□□ -1.31
VPS41-214ENST00000490924 NID1P14543 1247 aa6.85□□□□□ -1.31
VPS41-214ENST00000490924 ITGB7P26010 798 aa6.85□□□□□ -1.31
VPS41-214ENST00000490924 KCNJ6P48051 423 aa6.85□□□□□ -1.31
VPS41-214ENST00000490924 G3BP1Q13283 466 aaKnown RBP eCLIP6.85□□□□□ -1.31
VPS41-214ENST00000490924 RABL6Q3YEC7 729 aaPredicted RBP6.85□□□□□ -1.31
VPS41-214ENST00000490924 C1orf141Q5JVX7 400 aa6.85□□□□□ -1.31
VPS41-214ENST00000490924 LARP1BQ659C4 914 aaKnown RBP6.85□□□□□ -1.31
VPS41-214ENST00000490924 BLOC1S2Q6QNY1 142 aa6.85□□□□□ -1.31
VPS41-214ENST00000490924 CWC27Q6UX04 472 aaKnown RBP6.85□□□□□ -1.31
VPS41-214ENST00000490924 C8orf86Q6ZUL3 223 aa6.85□□□□□ -1.31
VPS41-214ENST00000490924 ARHGEF25Q86VW2 580 aa6.85□□□□□ -1.31
VPS41-214ENST00000490924 CREBRFQ8IUR6 639 aa6.85□□□□□ -1.31
VPS41-214ENST00000490924 NUDT8Q8WV74 236 aa6.85□□□□□ -1.31
VPS41-214ENST00000490924 LENG1Q96BZ8 264 aaPredicted RBP6.85□□□□□ -1.31
VPS41-214ENST00000490924 SUSD3Q96L08 255 aa6.85□□□□□ -1.31
VPS41-214ENST00000490924 JAKMIP1Q96N16 626 aaKnown RBP6.85□□□□□ -1.31
VPS41-214ENST00000490924 FEZ1Q99689 392 aa6.85□□□□□ -1.31
VPS41-214ENST00000490924 AGXT2Q9BYV1 514 aa6.85□□□□□ -1.31
VPS41-214ENST00000490924 IL25Q9H293 177 aa6.85□□□□□ -1.31
VPS41-214ENST00000490924 CLSTN2Q9H4D0 955 aa6.85□□□□□ -1.31
VPS41-214ENST00000490924 PHAXQ9H814 394 aaKnown RBP6.85□□□□□ -1.31
VPS41-214ENST00000490924 IL1RAPL2Q9NP60 686 aa6.85□□□□□ -1.31
VPS41-214ENST00000490924 C9orf78Q9NZ63 289 aaPredicted RBP6.85□□□□□ -1.31
VPS41-214ENST00000490924 CNPY2Q9Y2B0 182 aa6.85□□□□□ -1.31
VPS41-214ENST00000490924 STARD13Q9Y3M8 1113 aa6.85□□□□□ -1.31
VPS41-214ENST00000490924 PAXBP1Q9Y5B6 917 aa6.85□□□□□ -1.31
VPS41-214ENST00000490924 RBM8AQ9Y5S9 174 aaKnown RBP6.85□□□□□ -1.31
VPS41-214ENST00000490924 KIF1AQ12756 1690 aa6.84□□□□□ -1.31
VPS41-214ENST00000490924 SH3TC1Q8TE82 1336 aa6.84□□□□□ -1.31
VPS41-214ENST00000490924 SLC27A2O14975 620 aa6.84□□□□□ -1.31
VPS41-214ENST00000490924 MYO1BO43795 1136 aa6.84□□□□□ -1.31
VPS41-214ENST00000490924 HIRAP54198 1017 aaPredicted RBP6.84□□□□□ -1.31
VPS41-214ENST00000490924 EVCP57679 992 aa6.84□□□□□ -1.31
VPS41-214ENST00000490924 NEXNQ0ZGT2 675 aa6.84□□□□□ -1.31
VPS41-214ENST00000490924 OS9Q13438 667 aaPredicted RBP6.84□□□□□ -1.31
VPS41-214ENST00000490924 ADGRE1Q14246 886 aa6.84□□□□□ -1.31
VPS41-214ENST00000490924 MBTPS1Q14703 1052 aa6.84□□□□□ -1.31
VPS41-214ENST00000490924 ME3Q16798 604 aa6.84□□□□□ -1.31
VPS41-214ENST00000490924 LRRFIP1Q32MZ4 808 aaKnown RBP6.84□□□□□ -1.31
VPS41-214ENST00000490924 TSHZ3Q63HK5 1081 aa6.84□□□□□ -1.31
VPS41-214ENST00000490924 ZNF530Q6P9A1 599 aaPredicted RBP6.84□□□□□ -1.31
VPS41-214ENST00000490924 LARGE2Q8N3Y3 721 aa6.84□□□□□ -1.31
VPS41-214ENST00000490924 RNF214Q8ND24 703 aa6.84□□□□□ -1.31
VPS41-214ENST00000490924 SMARCC2Q8TAQ2 1214 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms