RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 SH3D19Q5HYK7 790 aa9.74□□□□□ -0.85
USP54-212ENST00000480210 CREB3L3Q68CJ9 461 aa9.74□□□□□ -0.85
USP54-212ENST00000480210 PAXIP1Q6ZW49 1069 aaPredicted RBP9.74□□□□□ -0.85
USP54-212ENST00000480210 RALYLQ86SE5 291 aaKnown RBP9.74□□□□□ -0.85
USP54-212ENST00000480210 DGKHQ86XP1 1220 aa9.74□□□□□ -0.85
USP54-212ENST00000480210 TMTC2Q8N394 836 aa9.74□□□□□ -0.85
USP54-212ENST00000480210 MKL1Q969V6 931 aa9.74□□□□□ -0.85
USP54-212ENST00000480210 UPF2Q9HAU5 1272 aaKnown RBP9.74□□□□□ -0.85
USP54-212ENST00000480210 TOMM22Q9NS69 142 aa9.74□□□□□ -0.85
USP54-212ENST00000480210 ZHX2Q9Y6X8 837 aa9.74□□□□□ -0.85
USP54-212ENST00000480210 IGKV6D-41A0A0C4DH26 115 aa9.73□□□□□ -0.85
USP54-212ENST00000480210 ERICH2A1L162 156 aa9.73□□□□□ -0.85
USP54-212ENST00000480210 FAM155AB1AL88 458 aaPredicted RBP9.73□□□□□ -0.85
USP54-212ENST00000480210 E7EWF7 191 aa9.73□□□□□ -0.85
USP54-212ENST00000480210 SLC27A2O14975 620 aa9.73□□□□□ -0.85
USP54-212ENST00000480210 GDF11O95390 407 aa9.73□□□□□ -0.85
USP54-212ENST00000480210 TTLL1O95922 423 aa9.73□□□□□ -0.85
USP54-212ENST00000480210 AKR1B1P15121 316 aa9.73□□□□□ -0.85
USP54-212ENST00000480210 ANP32AP39687 249 aaKnown RBP9.73□□□□□ -0.85
USP54-212ENST00000480210 NOVP48745 357 aa9.73□□□□□ -0.85
USP54-212ENST00000480210 BACE1P56817 501 aa9.73□□□□□ -0.85
USP54-212ENST00000480210 PABPC4Q13310 644 aaKnown RBP eCLIP9.73□□□□□ -0.85
USP54-212ENST00000480210 RRP1BQ14684 758 aaKnown RBP9.73□□□□□ -0.85
USP54-212ENST00000480210 RAB3GAP1Q15042 981 aa9.73□□□□□ -0.85
USP54-212ENST00000480210 CYP4F22Q6NT55 531 aa9.73□□□□□ -0.85
USP54-212ENST00000480210 USP17L2Q6R6M4 530 aa9.73□□□□□ -0.85
USP54-212ENST00000480210 PROCA1Q8NCQ7 364 aaPredicted RBP9.73□□□□□ -0.85
USP54-212ENST00000480210 SLC44A5Q8NCS7 719 aa9.73□□□□□ -0.85
USP54-212ENST00000480210 OTUD5Q96G74 571 aa9.73□□□□□ -0.85
USP54-212ENST00000480210 CLMNQ96JQ2 1002 aa9.73□□□□□ -0.85
USP54-212ENST00000480210 TMOD4Q9NZQ9 345 aa9.73□□□□□ -0.85
USP54-212ENST00000480210 FZD1Q9UP38 647 aa9.73□□□□□ -0.85
USP54-212ENST00000480210 SLC45A1Q9Y2W3 748 aa9.73□□□□□ -0.85
USP54-212ENST00000480210 WDR19Q8NEZ3 1342 aa9.73□□□□□ -0.85
USP54-212ENST00000480210 A0A0G2JLL6 359 aaPredicted RBP9.72□□□□□ -0.85
USP54-212ENST00000480210 IRF6O14896 467 aa9.72□□□□□ -0.85
USP54-212ENST00000480210 PRDM1O75626 825 aa9.72□□□□□ -0.85
USP54-212ENST00000480210 GUCY1A2P33402 732 aa9.72□□□□□ -0.85
USP54-212ENST00000480210 MCM5P33992 734 aa9.72□□□□□ -0.85
USP54-212ENST00000480210 VEGFBP49765 207 aa9.72□□□□□ -0.85
USP54-212ENST00000480210 MAP2K1Q02750 393 aaPredicted RBP9.72□□□□□ -0.85
USP54-212ENST00000480210 ICA1Q05084 483 aa9.72□□□□□ -0.85
USP54-212ENST00000480210 SPP2Q13103 211 aa9.72□□□□□ -0.85
USP54-212ENST00000480210 SEPT2Q15019 361 aa9.72□□□□□ -0.85
USP54-212ENST00000480210 C8orf34Q49A92 452 aa9.72□□□□□ -0.85
USP54-212ENST00000480210 RRP12Q5JTH9 1297 aaKnown RBP9.72□□□□□ -0.85
USP54-212ENST00000480210 PRRT2Q7Z6L0 340 aaPredicted RBP9.72□□□□□ -0.85
USP54-212ENST00000480210 TBC1D10CQ8IV04 446 aa9.72□□□□□ -0.85
USP54-212ENST00000480210 ANKS1AQ92625 1134 aa9.72□□□□□ -0.85
USP54-212ENST00000480210 LPAR1Q92633 364 aa9.72□□□□□ -0.85
USP54-212ENST00000480210 TMEM87BQ96K49 555 aa9.72□□□□□ -0.85
USP54-212ENST00000480210 C12orf42Q96LP6 360 aa9.72□□□□□ -0.85
USP54-212ENST00000480210 NEK1Q96PY6 1258 aa9.72□□□□□ -0.85
USP54-212ENST00000480210 TM6SF1Q9BZW5 370 aa9.72□□□□□ -0.85
USP54-212ENST00000480210 KIAA1683Q9H0B3 1180 aa9.72□□□□□ -0.85
USP54-212ENST00000480210 GOPCQ9HD26 462 aa9.72□□□□□ -0.85
USP54-212ENST00000480210 MTMR4Q9NYA4 1195 aa9.72□□□□□ -0.85
USP54-212ENST00000480210 ZSWIM5Q9P217 1185 aa9.72□□□□□ -0.85
USP54-212ENST00000480210 TMX2Q9Y320 296 aa9.72□□□□□ -0.85
USP54-212ENST00000480210 B4E1Z4 1266 aa9.71□□□□□ -0.86
USP54-212ENST00000480210 CA12O43570 354 aa9.71□□□□□ -0.86
USP54-212ENST00000480210 KDM4AO75164 1064 aa9.71□□□□□ -0.86
USP54-212ENST00000480210 SLURP2P0DP57 97 aa9.71□□□□□ -0.86
USP54-212ENST00000480210 KIF23Q02241 960 aaPredicted RBP9.71□□□□□ -0.86
USP54-212ENST00000480210 EVX2Q03828 476 aa9.71□□□□□ -0.86
USP54-212ENST00000480210 RCSD1Q6JBY9 416 aa9.71□□□□□ -0.86
USP54-212ENST00000480210 ANKRD23Q86SG2 305 aa9.71□□□□□ -0.86
USP54-212ENST00000480210 STK11IPQ8N1F8 1099 aa9.71□□□□□ -0.86
USP54-212ENST00000480210 DNAJC5GQ8N7S2 189 aa9.71□□□□□ -0.86
USP54-212ENST00000480210 GTF3C2Q8WUA4 911 aaPredicted RBP9.71□□□□□ -0.86
USP54-212ENST00000480210 IL17RAQ96F46 866 aa9.71□□□□□ -0.86
USP54-212ENST00000480210 MS4A4AQ96JQ5 239 aa9.71□□□□□ -0.86
USP54-212ENST00000480210 FEZ1Q99689 392 aa9.71□□□□□ -0.86
USP54-212ENST00000480210 UBAC1Q9BSL1 405 aa9.71□□□□□ -0.86
USP54-212ENST00000480210 NBPF3Q9H094 633 aa9.71□□□□□ -0.86
USP54-212ENST00000480210 PNMA3Q9UL41 463 aa9.71□□□□□ -0.86
USP54-212ENST00000480210 LOC285556D6RIA3 1793 aa9.7□□□□□ -0.86
USP54-212ENST00000480210 CCL15-CCL14A0A0B4J2E2 113 aa9.7□□□□□ -0.86
USP54-212ENST00000480210 SMIM22K7EJ46 135 aa9.7□□□□□ -0.86
USP54-212ENST00000480210 TOP1P11387 765 aaKnown RBP9.7□□□□□ -0.86
USP54-212ENST00000480210 EEF2P13639 858 aaKnown RBP9.7□□□□□ -0.86
USP54-212ENST00000480210 OSBPP22059 807 aa9.7□□□□□ -0.86
USP54-212ENST00000480210 HOXA7P31268 230 aaPredicted RBP9.7□□□□□ -0.86
USP54-212ENST00000480210 GJA5P36382 358 aa9.7□□□□□ -0.86
USP54-212ENST00000480210 CCL15Q16663 113 aa9.7□□□□□ -0.86
USP54-212ENST00000480210 FAM47AQ5JRC9 791 aa9.7□□□□□ -0.86
USP54-212ENST00000480210 DHX32Q7L7V1 743 aaKnown RBP9.7□□□□□ -0.86
USP54-212ENST00000480210 FBXL16Q8N461 479 aa9.7□□□□□ -0.86
USP54-212ENST00000480210 GMCL1P1Q8NEA9 526 aa9.7□□□□□ -0.86
USP54-212ENST00000480210 CEP95Q96GE4 821 aa9.7□□□□□ -0.86
USP54-212ENST00000480210 ZSCAN10Q96SZ4 725 aaPredicted RBP9.7□□□□□ -0.86
USP54-212ENST00000480210 BEGAINQ9BUH8 593 aa9.7□□□□□ -0.86
USP54-212ENST00000480210 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.7□□□□□ -0.86
USP54-212ENST00000480210 VCPKMTQ9H867 229 aa9.7□□□□□ -0.86
USP54-212ENST00000480210 CLIP2Q9UDT6 1046 aa9.7□□□□□ -0.86
USP54-212ENST00000480210 NEDD4P46934 1319 aa9.7□□□□□ -0.86
USP54-212ENST00000480210 THSD7BQ9C0I4 1608 aa9.7□□□□□ -0.86
USP54-212ENST00000480210 TRIM75PA6NK02 468 aa9.69□□□□□ -0.86
USP54-212ENST00000480210 WDR46O15213 610 aaKnown RBP9.69□□□□□ -0.86
USP54-212ENST00000480210 FDX1P10109 184 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms