RNA–Protein interactions for RNA: ENST00000477572.1

VPS50-213, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-213ENST00000477572 PPP1R13LQ8WUF5 828 aa8.01□□□□□ -1.13
VPS50-213ENST00000477572 LRRN2O75325 713 aa8□□□□□ -1.13
VPS50-213ENST00000477572 HTR3BO95264 441 aa8□□□□□ -1.13
VPS50-213ENST00000477572 GARTP22102 1010 aa8□□□□□ -1.13
VPS50-213ENST00000477572 TNNI2P48788 182 aa8□□□□□ -1.13
VPS50-213ENST00000477572 YARSP54577 528 aaKnown RBP8□□□□□ -1.13
VPS50-213ENST00000477572 FYB2Q5VWT5 728 aa8□□□□□ -1.13
VPS50-213ENST00000477572 FBXL19Q6PCT2 694 aa8□□□□□ -1.13
VPS50-213ENST00000477572 CYB5D2Q8WUJ1 264 aa8□□□□□ -1.13
VPS50-213ENST00000477572 Q96M66 194 aa8□□□□□ -1.13
VPS50-213ENST00000477572 LMCD1Q9NZU5 365 aa8□□□□□ -1.13
VPS50-213ENST00000477572 GGT7Q9UJ14 662 aa8□□□□□ -1.13
VPS50-213ENST00000477572 CTNND2Q9UQB3 1225 aa8□□□□□ -1.13
VPS50-213ENST00000477572 DNAJA2O60884 412 aa7.99□□□□□ -1.13
VPS50-213ENST00000477572 KIR3DL1P43629 444 aa7.99□□□□□ -1.13
VPS50-213ENST00000477572 ZNF648Q5T619 568 aaPredicted RBP7.99□□□□□ -1.13
VPS50-213ENST00000477572 TMCO4Q5TGY1 634 aa7.99□□□□□ -1.13
VPS50-213ENST00000477572 ERMP1Q7Z2K6 904 aa7.99□□□□□ -1.13
VPS50-213ENST00000477572 REC114Q7Z4M0 266 aa7.99□□□□□ -1.13
VPS50-213ENST00000477572 BAHD1Q8TBE0 780 aaPredicted RBP7.99□□□□□ -1.13
VPS50-213ENST00000477572 MRPL58Q14197 206 aaKnown RBP7.98□□□□□ -1.13
VPS50-213ENST00000477572 TMEM201Q5SNT2 666 aa7.98□□□□□ -1.13
VPS50-213ENST00000477572 FAM196AQ6ZSG2 479 aa7.98□□□□□ -1.13
VPS50-213ENST00000477572 SLAMF8Q9P0V8 285 aa7.98□□□□□ -1.13
VPS50-213ENST00000477572 ZBTB7CA1YPR0 619 aa7.97□□□□□ -1.13
VPS50-213ENST00000477572 ITGAEP38570 1179 aa7.97□□□□□ -1.13
VPS50-213ENST00000477572 EIF4A3P38919 411 aaKnown RBP7.97□□□□□ -1.13
VPS50-213ENST00000477572 MPP2Q14168 576 aa7.97□□□□□ -1.13
VPS50-213ENST00000477572 THAP5Q7Z6K1 395 aa7.97□□□□□ -1.13
VPS50-213ENST00000477572 CREG2Q8IUH2 290 aa7.97□□□□□ -1.13
VPS50-213ENST00000477572 PHACTR4Q8IZ21 702 aa7.97□□□□□ -1.13
VPS50-213ENST00000477572 FLAD1Q8NFF5 587 aa7.97□□□□□ -1.13
VPS50-213ENST00000477572 KIF2CQ99661 725 aa7.97□□□□□ -1.13
VPS50-213ENST00000477572 DUSP15Q9H1R2 295 aaPredicted RBP7.97□□□□□ -1.13
VPS50-213ENST00000477572 BRMS1Q9HCU9 246 aa7.97□□□□□ -1.13
VPS50-213ENST00000477572 CRKP46108 304 aa7.96□□□□□ -1.14
VPS50-213ENST00000477572 KCNMB1Q16558 191 aa7.96□□□□□ -1.14
VPS50-213ENST00000477572 ZSWIM9Q86XI8 627 aa7.96□□□□□ -1.14
VPS50-213ENST00000477572 ZNF296Q8WUU4 475 aaPredicted RBP7.96□□□□□ -1.14
VPS50-213ENST00000477572 COX4I2Q96KJ9 171 aa7.96□□□□□ -1.14
VPS50-213ENST00000477572 C19orf73Q9NVV2 129 aa7.96□□□□□ -1.14
VPS50-213ENST00000477572 PRR36Q9H6K5 1346 aa7.96□□□□□ -1.14
VPS50-213ENST00000477572 DNAJC25-GNG10A0A024R161 153 aa7.95□□□□□ -1.14
VPS50-213ENST00000477572 ESR1P03372 595 aa7.95□□□□□ -1.14
VPS50-213ENST00000477572 ZNF16P17020 682 aaPredicted RBP7.95□□□□□ -1.14
VPS50-213ENST00000477572 TPP2P29144 1249 aaPredicted RBP7.95□□□□□ -1.14
VPS50-213ENST00000477572 CWF19L2Q2TBE0 894 aaKnown RBP7.95□□□□□ -1.14
VPS50-213ENST00000477572 SLFN12Q8IYM2 578 aa7.95□□□□□ -1.14
VPS50-213ENST00000477572 POU5F2Q8N7G0 328 aa7.95□□□□□ -1.14
VPS50-213ENST00000477572 DTWD2Q8NBA8 298 aa7.95□□□□□ -1.14
VPS50-213ENST00000477572 PIWIL2Q8TC59 973 aaKnown RBP7.95□□□□□ -1.14
VPS50-213ENST00000477572 LIN37Q96GY3 246 aaPredicted RBP7.95□□□□□ -1.14
VPS50-213ENST00000477572 UBP1Q9NZI7 540 aa7.95□□□□□ -1.14
VPS50-213ENST00000477572 ADAMTS1Q9UHI8 967 aa7.95□□□□□ -1.14
VPS50-213ENST00000477572 SUPT16HQ9Y5B9 1047 aaKnown RBP7.95□□□□□ -1.14
VPS50-213ENST00000477572 PCDHB14Q9Y5E9 798 aa7.95□□□□□ -1.14
VPS50-213ENST00000477572 C8AP07357 584 aa7.94□□□□□ -1.14
VPS50-213ENST00000477572 ARSHQ5FYA8 562 aa7.94□□□□□ -1.14
VPS50-213ENST00000477572 RALGPS1Q5JS13 557 aa7.94□□□□□ -1.14
VPS50-213ENST00000477572 HS2ST1Q7LGA3 356 aa7.94□□□□□ -1.14
VPS50-213ENST00000477572 TMEM87AQ8NBN3 555 aa7.94□□□□□ -1.14
VPS50-213ENST00000477572 CCDC74BQ96LY2 380 aa7.94□□□□□ -1.14
VPS50-213ENST00000477572 KREMEN1Q96MU8 473 aa7.94□□□□□ -1.14
VPS50-213ENST00000477572 ALPK1Q96QP1 1244 aa7.94□□□□□ -1.14
VPS50-213ENST00000477572 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.94□□□□□ -1.14
VPS50-213ENST00000477572 ZNF503-AS2A6NEH8 195 aa7.93□□□□□ -1.14
VPS50-213ENST00000477572 GREM1O60565 184 aa7.93□□□□□ -1.14
VPS50-213ENST00000477572 YBX3P16989 372 aaKnown RBP eCLIP7.93□□□□□ -1.14
VPS50-213ENST00000477572 GBP1P32455 592 aa7.93□□□□□ -1.14
VPS50-213ENST00000477572 AFMP43652 599 aa7.93□□□□□ -1.14
VPS50-213ENST00000477572 HK2P52789 917 aa7.93□□□□□ -1.14
VPS50-213ENST00000477572 ZNF124Q15973 351 aa7.93□□□□□ -1.14
VPS50-213ENST00000477572 SEZ6Q53EL9 994 aa7.93□□□□□ -1.14
VPS50-213ENST00000477572 TTC6Q86TZ1 520 aa7.93□□□□□ -1.14
VPS50-213ENST00000477572 TMEM40Q8WWA1 233 aa7.93□□□□□ -1.14
VPS50-213ENST00000477572 KIRREL1Q96J84 757 aa7.93□□□□□ -1.14
VPS50-213ENST00000477572 GPATCH2Q9NW75 528 aa7.93□□□□□ -1.14
VPS50-213ENST00000477572 KCNH3Q9ULD8 1083 aa7.93□□□□□ -1.14
VPS50-213ENST00000477572 LRRC10BA6NIK2 292 aa7.92□□□□□ -1.14
VPS50-213ENST00000477572 SLC22A31A6NKX4 558 aa7.92□□□□□ -1.14
VPS50-213ENST00000477572 MCM4P33991 863 aa7.92□□□□□ -1.14
VPS50-213ENST00000477572 GDNFP39905 211 aa7.92□□□□□ -1.14
VPS50-213ENST00000477572 ERVFC1P60507 584 aa7.92□□□□□ -1.14
VPS50-213ENST00000477572 MLANAQ16655 118 aa7.92□□□□□ -1.14
VPS50-213ENST00000477572 LDLRAD1Q5T700 205 aa7.92□□□□□ -1.14
VPS50-213ENST00000477572 TMPRSS7Q7RTY8 843 aa7.92□□□□□ -1.14
VPS50-213ENST00000477572 RNF141Q8WVD5 230 aa7.92□□□□□ -1.14
VPS50-213ENST00000477572 ADAMTS10Q9H324 1103 aa7.92□□□□□ -1.14
VPS50-213ENST00000477572 TRIT1Q9H3H1 467 aaKnown RBP7.92□□□□□ -1.14
VPS50-213ENST00000477572 DUSP13Q9UII6 198 aa7.92□□□□□ -1.14
VPS50-213ENST00000477572 POLR2BP30876 1174 aaKnown RBP7.91□□□□□ -1.14
VPS50-213ENST00000477572 MFAP1P55081 439 aaKnown RBP7.91□□□□□ -1.14
VPS50-213ENST00000477572 CHMP4BP1P59074 171 aa7.91□□□□□ -1.14
VPS50-213ENST00000477572 GK5Q6ZS86 529 aa7.91□□□□□ -1.14
VPS50-213ENST00000477572 KCNQ5Q9NR82 932 aa7.91□□□□□ -1.14
VPS50-213ENST00000477572 SHISA3A0PJX4 238 aa7.9□□□□□ -1.14
VPS50-213ENST00000477572 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.9□□□□□ -1.14
VPS50-213ENST00000477572 RAG1P15918 1043 aa7.9□□□□□ -1.14
VPS50-213ENST00000477572 LTKP29376 864 aa7.9□□□□□ -1.14
VPS50-213ENST00000477572 TRHRP34981 398 aaPredicted RBP7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms