RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 MMP1P03956 469 aa16.48■□□□□ 0.23
HDAC6-220ENST00000477528 PNMA1Q8ND90 353 aa16.48■□□□□ 0.23
HDAC6-220ENST00000477528 GPCPD1Q9NPB8 672 aa16.48■□□□□ 0.23
HDAC6-220ENST00000477528 PCDHA5Q9Y5H7 936 aa16.48■□□□□ 0.23
HDAC6-220ENST00000477528 IKBKBO14920 756 aa16.47■□□□□ 0.23
HDAC6-220ENST00000477528 SKIDA1Q1XH10 827 aa16.47■□□□□ 0.23
HDAC6-220ENST00000477528 TMEM132AQ24JP5 1023 aa16.47■□□□□ 0.23
HDAC6-220ENST00000477528 CNNM4Q6P4Q7 775 aa16.47■□□□□ 0.23
HDAC6-220ENST00000477528 STOX1Q6ZVD7 989 aa16.47■□□□□ 0.23
HDAC6-220ENST00000477528 TTF2Q9UNY4 1162 aaKnown RBP16.47■□□□□ 0.23
HDAC6-220ENST00000477528 MAPK8IP1Q9UQF2 711 aa16.47■□□□□ 0.23
HDAC6-220ENST00000477528 TACC1O75410 805 aa16.47■□□□□ 0.23
HDAC6-220ENST00000477528 DNA2P51530 1060 aa16.47■□□□□ 0.23
HDAC6-220ENST00000477528 CETN1Q12798 172 aa16.47■□□□□ 0.23
HDAC6-220ENST00000477528 NAA15Q9BXJ9 866 aaKnown RBP16.47■□□□□ 0.23
HDAC6-220ENST00000477528 FANCLQ9NW38 375 aa16.47■□□□□ 0.23
HDAC6-220ENST00000477528 GUCA1BQ9UMX6 200 aa16.47■□□□□ 0.23
HDAC6-220ENST00000477528 EXOSC10Q01780 885 aaKnown RBP16.47■□□□□ 0.23
HDAC6-220ENST00000477528 CLEC4GQ6UXB4 293 aa16.47■□□□□ 0.23
HDAC6-220ENST00000477528 TBC1D10CQ8IV04 446 aa16.47■□□□□ 0.23
HDAC6-220ENST00000477528 STAMQ92783 540 aa16.47■□□□□ 0.23
HDAC6-220ENST00000477528 KAZALD1Q96I82 304 aa16.47■□□□□ 0.23
HDAC6-220ENST00000477528 SPAG5Q96R06 1193 aa16.47■□□□□ 0.23
HDAC6-220ENST00000477528 OGFRQ9NZT2 677 aa16.46■□□□□ 0.23
HDAC6-220ENST00000477528 CYP26C1Q6V0L0 522 aa16.46■□□□□ 0.23
HDAC6-220ENST00000477528 RDXP35241 583 aaKnown RBP16.46■□□□□ 0.23
HDAC6-220ENST00000477528 TBC1D8BQ0IIM8 1120 aa16.46■□□□□ 0.23
HDAC6-220ENST00000477528 CSGALNACT2Q8N6G5 542 aa16.46■□□□□ 0.23
HDAC6-220ENST00000477528 AIFM3Q96NN9 605 aa16.46■□□□□ 0.23
HDAC6-220ENST00000477528 DYNLL1P63167 89 aaKnown RBP16.45■□□□□ 0.22
HDAC6-220ENST00000477528 TMTC1Q8IUR5 882 aa16.45■□□□□ 0.22
HDAC6-220ENST00000477528 GLT8D2Q9H1C3 349 aa16.45■□□□□ 0.22
HDAC6-220ENST00000477528 BLZF1Q9H2G9 400 aa16.45■□□□□ 0.22
HDAC6-220ENST00000477528 HDAC9Q9UKV0 1011 aa16.45■□□□□ 0.22
HDAC6-220ENST00000477528 TXKP42681 527 aa16.45■□□□□ 0.22
HDAC6-220ENST00000477528 NELFBQ8WX92 580 aa16.45■□□□□ 0.22
HDAC6-220ENST00000477528 BCL2L12Q9HB09 334 aa16.45■□□□□ 0.22
HDAC6-220ENST00000477528 ADCY7P51828 1080 aa16.45■□□□□ 0.22
HDAC6-220ENST00000477528 TAF3Q5VWG9 929 aa16.45■□□□□ 0.22
HDAC6-220ENST00000477528 GALNT17Q6IS24 598 aa16.45■□□□□ 0.22
HDAC6-220ENST00000477528 NEK11Q8NG66 645 aa16.45■□□□□ 0.22
HDAC6-220ENST00000477528 KCNB2Q92953 911 aa16.45■□□□□ 0.22
HDAC6-220ENST00000477528 NOC4LQ9BVI4 516 aaKnown RBP16.45■□□□□ 0.22
HDAC6-220ENST00000477528 CENPHQ9H3R5 247 aa16.45■□□□□ 0.22
HDAC6-220ENST00000477528 RIPOR2Q9Y4F9 1068 aa16.45■□□□□ 0.22
HDAC6-220ENST00000477528 ATP2B4P23634 1241 aa16.45■□□□□ 0.22
HDAC6-220ENST00000477528 EVCP57679 992 aa16.45■□□□□ 0.22
HDAC6-220ENST00000477528 ALX1Q15699 326 aa16.45■□□□□ 0.22
HDAC6-220ENST00000477528 BSDC1Q9NW68 430 aaPredicted RBP16.45■□□□□ 0.22
HDAC6-220ENST00000477528 ZNF827Q17R98 1081 aa16.44■□□□□ 0.22
HDAC6-220ENST00000477528 MFSD14BQ5SR56 506 aa16.44■□□□□ 0.22
HDAC6-220ENST00000477528 CACTINQ8WUQ7 758 aaKnown RBP16.44■□□□□ 0.22
HDAC6-220ENST00000477528 EIF6P56537 245 aaKnown RBP16.44■□□□□ 0.22
HDAC6-220ENST00000477528 SCARF1Q14162 830 aa16.44■□□□□ 0.22
HDAC6-220ENST00000477528 IFI16Q16666 785 aaKnown RBP16.44■□□□□ 0.22
HDAC6-220ENST00000477528 OGFOD1Q8N543 542 aa16.44■□□□□ 0.22
HDAC6-220ENST00000477528 STAG1Q8WVM7 1258 aa16.44■□□□□ 0.22
HDAC6-220ENST00000477528 LRWD1Q9UFC0 647 aa16.44■□□□□ 0.22
HDAC6-220ENST00000477528 LEMD3Q9Y2U8 911 aa16.44■□□□□ 0.22
HDAC6-220ENST00000477528 TRAPPC10P48553 1259 aa16.44■□□□□ 0.22
HDAC6-220ENST00000477528 PPP2R3AQ06190 1150 aa16.44■□□□□ 0.22
HDAC6-220ENST00000477528 TUBB2AQ13885 445 aa16.44■□□□□ 0.22
HDAC6-220ENST00000477528 CABP7Q86V35 215 aa16.44■□□□□ 0.22
HDAC6-220ENST00000477528 SYCP3Q8IZU3 236 aa16.44■□□□□ 0.22
HDAC6-220ENST00000477528 REXO1Q8N1G1 1221 aaKnown RBP16.44■□□□□ 0.22
HDAC6-220ENST00000477528 TUBB2BQ9BVA1 445 aa16.44■□□□□ 0.22
HDAC6-220ENST00000477528 CSRNP2Q9H175 543 aa16.44■□□□□ 0.22
HDAC6-220ENST00000477528 TAB2Q9NYJ8 693 aa16.44■□□□□ 0.22
HDAC6-220ENST00000477528 TUBBP07437 444 aa16.44■□□□□ 0.22
HDAC6-220ENST00000477528 PTGDRQ13258 359 aa16.44■□□□□ 0.22
HDAC6-220ENST00000477528 A0A087WWV3 80 aa16.43■□□□□ 0.22
HDAC6-220ENST00000477528 NOP2P46087 812 aaKnown RBP16.43■□□□□ 0.22
HDAC6-220ENST00000477528 CCDC65Q8IXS2 484 aa16.43■□□□□ 0.22
HDAC6-220ENST00000477528 SYMPKQ92797 1274 aaKnown RBP16.43■□□□□ 0.22
HDAC6-220ENST00000477528 PUF60Q9UHX1 559 aaKnown RBP16.43■□□□□ 0.22
HDAC6-220ENST00000477528 SMCO2A6NFE2 343 aa16.43■□□□□ 0.22
HDAC6-220ENST00000477528 CYB5R4Q7L1T6 521 aa16.43■□□□□ 0.22
HDAC6-220ENST00000477528 CCDC51Q96ER9 411 aa16.43■□□□□ 0.22
HDAC6-220ENST00000477528 STK36Q9NRP7 1315 aa16.43■□□□□ 0.22
HDAC6-220ENST00000477528 PSDA5PKW4 1024 aaPredicted RBP16.43■□□□□ 0.22
HDAC6-220ENST00000477528 CSF1RP07333 972 aa16.43■□□□□ 0.22
HDAC6-220ENST00000477528 KRT9P35527 623 aa16.43■□□□□ 0.22
HDAC6-220ENST00000477528 CCDC122Q5T0U0 273 aa16.43■□□□□ 0.22
HDAC6-220ENST00000477528 SPATA1Q5VX52 437 aa16.43■□□□□ 0.22
HDAC6-220ENST00000477528 SARM1Q6SZW1 724 aa16.43■□□□□ 0.22
HDAC6-220ENST00000477528 NUP58Q9BVL2 599 aa16.43■□□□□ 0.22
HDAC6-220ENST00000477528 RIMS1Q86UR5 1692 aaKnown RBP16.43■□□□□ 0.22
HDAC6-220ENST00000477528 XDHP47989 1333 aa16.42■□□□□ 0.22
HDAC6-220ENST00000477528 H0YHG0 523 aa16.42■□□□□ 0.22
HDAC6-220ENST00000477528 GTPBP6O43824 516 aaPredicted RBP16.42■□□□□ 0.22
HDAC6-220ENST00000477528 NR5A1Q13285 461 aa16.42■□□□□ 0.22
HDAC6-220ENST00000477528 DPP8Q6V1X1 898 aaPredicted RBP16.42■□□□□ 0.22
HDAC6-220ENST00000477528 NEDD4P46934 1319 aa16.42■□□□□ 0.22
HDAC6-220ENST00000477528 PRPF3O43395 683 aaKnown RBP16.42■□□□□ 0.22
HDAC6-220ENST00000477528 MATR3P43243 847 aaKnown RBP eCLIP16.42■□□□□ 0.22
HDAC6-220ENST00000477528 ELF2Q15723 593 aa16.42■□□□□ 0.22
HDAC6-220ENST00000477528 MTA3Q9BTC8 594 aa16.42■□□□□ 0.22
HDAC6-220ENST00000477528 CARD6Q9BX69 1037 aa16.42■□□□□ 0.22
HDAC6-220ENST00000477528 RNF216Q9NWF9 866 aaPredicted RBP16.42■□□□□ 0.22
HDAC6-220ENST00000477528 PXDNQ92626 1479 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms