RNA–Protein interactions for RNA: ENST00000474546.1

CCDC93-208, Transcript of coiled-coil domain containing 93, humanhuman

TSL 3

Gene CCDC93, Length 452 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC93-208ENST00000474546 KAZALD1Q96I82 304 aa9.09□□□□□ -0.95
CCDC93-208ENST00000474546 ZNF512BQ96KM6 892 aaPredicted RBP9.09□□□□□ -0.95
CCDC93-208ENST00000474546 TCEANC2Q96MN5 208 aa9.09□□□□□ -0.95
CCDC93-208ENST00000474546 GSDMAQ96QA5 445 aa9.09□□□□□ -0.95
CCDC93-208ENST00000474546 FOXP1Q9H334 677 aaPredicted RBP9.09□□□□□ -0.95
CCDC93-208ENST00000474546 RMND1Q9NWS8 449 aa9.09□□□□□ -0.95
CCDC93-208ENST00000474546 PIM2Q9P1W9 311 aa9.09□□□□□ -0.95
CCDC93-208ENST00000474546 RSPH14Q9UHP6 348 aa9.09□□□□□ -0.95
CCDC93-208ENST00000474546 CCNL1Q9UK58 526 aaPredicted RBP9.09□□□□□ -0.95
CCDC93-208ENST00000474546 L1RE1Q9UN81 338 aa9.09□□□□□ -0.95
CCDC93-208ENST00000474546 SCN11AQ9UI33 1791 aa9.09□□□□□ -0.95
CCDC93-208ENST00000474546 CCDC88AQ3V6T2 1871 aa9.08□□□□□ -0.96
CCDC93-208ENST00000474546 NEDD4P46934 1319 aa9.08□□□□□ -0.96
CCDC93-208ENST00000474546 ANO9A1A5B4 782 aa9.08□□□□□ -0.96
CCDC93-208ENST00000474546 SRRM3A6NNA2 597 aaPredicted RBP9.08□□□□□ -0.96
CCDC93-208ENST00000474546 SOX12O15370 315 aa9.08□□□□□ -0.96
CCDC93-208ENST00000474546 WDHD1O75717 1129 aaPredicted RBP9.08□□□□□ -0.96
CCDC93-208ENST00000474546 MYL1P05976 194 aa9.08□□□□□ -0.96
CCDC93-208ENST00000474546 IFIT1P09914 478 aaKnown RBP9.08□□□□□ -0.96
CCDC93-208ENST00000474546 DPEP1P16444 411 aa9.08□□□□□ -0.96
CCDC93-208ENST00000474546 LIFRP42702 1097 aa9.08□□□□□ -0.96
CCDC93-208ENST00000474546 METAP2P50579 478 aaKnown RBP eCLIP9.08□□□□□ -0.96
CCDC93-208ENST00000474546 GTF2A1P52655 376 aaPredicted RBP9.08□□□□□ -0.96
CCDC93-208ENST00000474546 CORO7P57737 925 aa9.08□□□□□ -0.96
CCDC93-208ENST00000474546 CCT2P78371 535 aaKnown RBP9.08□□□□□ -0.96
CCDC93-208ENST00000474546 KRT83P78385 493 aa9.08□□□□□ -0.96
CCDC93-208ENST00000474546 ITIH3Q06033 890 aa9.08□□□□□ -0.96
CCDC93-208ENST00000474546 TFCP2Q12800 502 aa9.08□□□□□ -0.96
CCDC93-208ENST00000474546 DALRD3Q5D0E6 543 aaKnown RBP9.08□□□□□ -0.96
CCDC93-208ENST00000474546 SWT1Q5T5J6 900 aaKnown RBP9.08□□□□□ -0.96
CCDC93-208ENST00000474546 B4GALNT4Q76KP1 1039 aa9.08□□□□□ -0.96
CCDC93-208ENST00000474546 PDILTQ8N807 584 aa9.08□□□□□ -0.96
CCDC93-208ENST00000474546 TC2NQ8N9U0 490 aa9.08□□□□□ -0.96
CCDC93-208ENST00000474546 AFAP1L1Q8TED9 768 aa9.08□□□□□ -0.96
CCDC93-208ENST00000474546 FERMT2Q96AC1 680 aa9.08□□□□□ -0.96
CCDC93-208ENST00000474546 CEP89Q96ST8 783 aa9.08□□□□□ -0.96
CCDC93-208ENST00000474546 ALG1Q9BT22 464 aa9.08□□□□□ -0.96
CCDC93-208ENST00000474546 TSGA10Q9BZW7 698 aa9.08□□□□□ -0.96
CCDC93-208ENST00000474546 SIL1Q9H173 461 aa9.08□□□□□ -0.96
CCDC93-208ENST00000474546 HAUS4Q9H6D7 363 aa9.08□□□□□ -0.96
CCDC93-208ENST00000474546 SPTBN5Q9NRC6 3674 aaKnown RBP9.08□□□□□ -0.96
CCDC93-208ENST00000474546 MAST3O60307 1309 aa9.07□□□□□ -0.96
CCDC93-208ENST00000474546 SHTN1A0MZ66 631 aa9.07□□□□□ -0.96
CCDC93-208ENST00000474546 TULP1O00294 542 aaPredicted RBP9.07□□□□□ -0.96
CCDC93-208ENST00000474546 NPHP1O15259 732 aa9.07□□□□□ -0.96
CCDC93-208ENST00000474546 OPA1O60313 960 aa9.07□□□□□ -0.96
CCDC93-208ENST00000474546 IGKV5-2P06315 115 aa9.07□□□□□ -0.96
CCDC93-208ENST00000474546 POTEIP0CG38 1075 aa9.07□□□□□ -0.96
CCDC93-208ENST00000474546 POTEJP0CG39 1038 aa9.07□□□□□ -0.96
CCDC93-208ENST00000474546 FDPSP14324 419 aaKnown RBP9.07□□□□□ -0.96
CCDC93-208ENST00000474546 IARSP41252 1262 aaKnown RBP9.07□□□□□ -0.96
CCDC93-208ENST00000474546 SARSP49591 514 aaKnown RBP9.07□□□□□ -0.96
CCDC93-208ENST00000474546 PPFIA1Q13136 1202 aa9.07□□□□□ -0.96
CCDC93-208ENST00000474546 MORC3Q14149 939 aa9.07□□□□□ -0.96
CCDC93-208ENST00000474546 NR1I3Q14994 352 aa9.07□□□□□ -0.96
CCDC93-208ENST00000474546 ALX1Q15699 326 aa9.07□□□□□ -0.96
CCDC93-208ENST00000474546 ZNF790Q6PG37 636 aa9.07□□□□□ -0.96
CCDC93-208ENST00000474546 STOX1Q6ZVD7 989 aa9.07□□□□□ -0.96
CCDC93-208ENST00000474546 PAXIP1Q6ZW49 1069 aaPredicted RBP9.07□□□□□ -0.96
CCDC93-208ENST00000474546 SGMS1Q86VZ5 419 aa9.07□□□□□ -0.96
CCDC93-208ENST00000474546 VPS37DQ86XT2 251 aa9.07□□□□□ -0.96
CCDC93-208ENST00000474546 MB21D2Q8IYB1 491 aaPredicted RBP9.07□□□□□ -0.96
CCDC93-208ENST00000474546 FAM177A1Q8N128 213 aaPredicted RBP9.07□□□□□ -0.96
CCDC93-208ENST00000474546 CCDC155Q8N6L0 562 aa9.07□□□□□ -0.96
CCDC93-208ENST00000474546 RETREG2Q8NC44 543 aa9.07□□□□□ -0.96
CCDC93-208ENST00000474546 NEK11Q8NG66 645 aa9.07□□□□□ -0.96
CCDC93-208ENST00000474546 SPATA20Q8TB22 786 aa9.07□□□□□ -0.96
CCDC93-208ENST00000474546 NOC3LQ8WTT2 800 aaKnown RBP9.07□□□□□ -0.96
CCDC93-208ENST00000474546 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.07□□□□□ -0.96
CCDC93-208ENST00000474546 MYCBPQ99417 103 aaPredicted RBP9.07□□□□□ -0.96
CCDC93-208ENST00000474546 CRACR2AQ9BSW2 395 aa9.07□□□□□ -0.96
CCDC93-208ENST00000474546 CARD10Q9BWT7 1032 aa9.07□□□□□ -0.96
CCDC93-208ENST00000474546 FANCLQ9NW38 375 aa9.07□□□□□ -0.96
CCDC93-208ENST00000474546 TLR7Q9NYK1 1049 aaKnown RBP9.07□□□□□ -0.96
CCDC93-208ENST00000474546 VPS18Q9P253 973 aa9.07□□□□□ -0.96
CCDC93-208ENST00000474546 CEP126Q9P2H0 1117 aa9.07□□□□□ -0.96
CCDC93-208ENST00000474546 NFE2L3Q9Y4A8 694 aa9.07□□□□□ -0.96
CCDC93-208ENST00000474546 ADGRG1Q9Y653 693 aa9.07□□□□□ -0.96
CCDC93-208ENST00000474546 CLIC4Q9Y696 253 aa9.07□□□□□ -0.96
CCDC93-208ENST00000474546 ARFGEF2Q9Y6D5 1785 aa9.07□□□□□ -0.96
CCDC93-208ENST00000474546 EYA2O00167 538 aa9.06□□□□□ -0.96
CCDC93-208ENST00000474546 GOLIM4O00461 696 aa9.06□□□□□ -0.96
CCDC93-208ENST00000474546 ZBTB43O43298 467 aa9.06□□□□□ -0.96
CCDC93-208ENST00000474546 MFAP3LO75121 409 aa9.06□□□□□ -0.96
CCDC93-208ENST00000474546 GNAT2P19087 354 aa9.06□□□□□ -0.96
CCDC93-208ENST00000474546 PTPREP23469 700 aa9.06□□□□□ -0.96
CCDC93-208ENST00000474546 SSRP1Q08945 709 aaKnown RBP9.06□□□□□ -0.96
CCDC93-208ENST00000474546 CASP8Q14790 479 aa9.06□□□□□ -0.96
CCDC93-208ENST00000474546 PTPAQ15257 358 aa9.06□□□□□ -0.96
CCDC93-208ENST00000474546 NBPF6Q5VWK0 638 aa9.06□□□□□ -0.96
CCDC93-208ENST00000474546 UBE3BQ7Z3V4 1068 aa9.06□□□□□ -0.96
CCDC93-208ENST00000474546 NOSTRINQ8IVI9 506 aa9.06□□□□□ -0.96
CCDC93-208ENST00000474546 AMOTL1Q8IY63 956 aa9.06□□□□□ -0.96
CCDC93-208ENST00000474546 RAPGEF4Q8WZA2 1011 aa9.06□□□□□ -0.96
CCDC93-208ENST00000474546 SMARCC1Q92922 1105 aaPredicted RBP9.06□□□□□ -0.96
CCDC93-208ENST00000474546 DHX58Q96C10 678 aa9.06□□□□□ -0.96
CCDC93-208ENST00000474546 NBPF4Q96M43 638 aa9.06□□□□□ -0.96
CCDC93-208ENST00000474546 MYD88Q99836 296 aa9.06□□□□□ -0.96
CCDC93-208ENST00000474546 DBNDD2Q9BQY9 259 aa9.06□□□□□ -0.96
CCDC93-208ENST00000474546 NUP58Q9BVL2 599 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms