RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 RASSF10A6NK89 507 aa17.9■□□□□ 0.46
NPHP4-205ENST00000466897 ZBTB48P10074 688 aaPredicted RBP17.9■□□□□ 0.46
NPHP4-205ENST00000466897 PPIL2Q13356 520 aa17.9■□□□□ 0.46
NPHP4-205ENST00000466897 SEPT2Q15019 361 aa17.9■□□□□ 0.46
NPHP4-205ENST00000466897 SHROOM1Q2M3G4 852 aaPredicted RBP17.9■□□□□ 0.46
NPHP4-205ENST00000466897 RGMBQ6NW40 437 aa17.9■□□□□ 0.46
NPHP4-205ENST00000466897 DHX32Q7L7V1 743 aaKnown RBP17.9■□□□□ 0.46
NPHP4-205ENST00000466897 DGKHQ86XP1 1220 aa17.9■□□□□ 0.46
NPHP4-205ENST00000466897 NKX2-3Q8TAU0 364 aa17.9■□□□□ 0.46
NPHP4-205ENST00000466897 CEP95Q96GE4 821 aa17.9■□□□□ 0.46
NPHP4-205ENST00000466897 JAKMIP1Q96N16 626 aaKnown RBP17.9■□□□□ 0.46
NPHP4-205ENST00000466897 TTC14Q96N46 770 aa17.9■□□□□ 0.46
NPHP4-205ENST00000466897 IL17RBQ9NRM6 502 aa17.9■□□□□ 0.46
NPHP4-205ENST00000466897 MTMR4Q9NYA4 1195 aa17.9■□□□□ 0.46
NPHP4-205ENST00000466897 NYAP2Q9P242 653 aa17.9■□□□□ 0.46
NPHP4-205ENST00000466897 ABT1Q9ULW3 272 aaKnown RBP17.9■□□□□ 0.46
NPHP4-205ENST00000466897 TTLL1O95922 423 aa17.89■□□□□ 0.45
NPHP4-205ENST00000466897 ANTXR2P58335 489 aa17.89■□□□□ 0.45
NPHP4-205ENST00000466897 ICA1Q05084 483 aa17.89■□□□□ 0.45
NPHP4-205ENST00000466897 SART3Q15020 963 aaKnown RBP17.89■□□□□ 0.45
NPHP4-205ENST00000466897 RAB3GAP1Q15042 981 aa17.89■□□□□ 0.45
NPHP4-205ENST00000466897 BLOC1S2Q6QNY1 142 aa17.89■□□□□ 0.45
NPHP4-205ENST00000466897 CYB5R4Q7L1T6 521 aa17.89■□□□□ 0.45
NPHP4-205ENST00000466897 FBXL16Q8N461 479 aa17.89■□□□□ 0.45
NPHP4-205ENST00000466897 ANKS1AQ92625 1134 aa17.89■□□□□ 0.45
NPHP4-205ENST00000466897 MKL1Q969V6 931 aa17.89■□□□□ 0.45
NPHP4-205ENST00000466897 TMEM87BQ96K49 555 aa17.89■□□□□ 0.45
NPHP4-205ENST00000466897 ZSCAN10Q96SZ4 725 aaPredicted RBP17.89■□□□□ 0.45
NPHP4-205ENST00000466897 UBAC1Q9BSL1 405 aa17.89■□□□□ 0.45
NPHP4-205ENST00000466897 ELP3Q9H9T3 547 aa17.89■□□□□ 0.45
NPHP4-205ENST00000466897 ZSWIM6Q9HCJ5 1215 aa17.89■□□□□ 0.45
NPHP4-205ENST00000466897 AFG3L2Q9Y4W6 797 aa17.89■□□□□ 0.45
NPHP4-205ENST00000466897 SLC10A3P09131 477 aa17.88■□□□□ 0.45
NPHP4-205ENST00000466897 EXOSC10Q01780 885 aaKnown RBP17.88■□□□□ 0.45
NPHP4-205ENST00000466897 ZNF280CQ8ND82 737 aa17.88■□□□□ 0.45
NPHP4-205ENST00000466897 CCDC102AQ96A19 550 aa17.88■□□□□ 0.45
NPHP4-205ENST00000466897 OPTNQ96CV9 577 aa17.88■□□□□ 0.45
NPHP4-205ENST00000466897 WNK4Q96J92 1243 aa17.88■□□□□ 0.45
NPHP4-205ENST00000466897 SH2D4AQ9H788 454 aa17.88■□□□□ 0.45
NPHP4-205ENST00000466897 ARHGEF10LQ9HCE6 1279 aa17.88■□□□□ 0.45
NPHP4-205ENST00000466897 KCNH4Q9UQ05 1017 aa17.88■□□□□ 0.45
NPHP4-205ENST00000466897 TNKSO95271 1327 aa17.88■□□□□ 0.45
NPHP4-205ENST00000466897 PARP14Q460N5 1801 aa17.87■□□□□ 0.45
NPHP4-205ENST00000466897 CXCL11O14625 94 aa17.87■□□□□ 0.45
NPHP4-205ENST00000466897 PRC1O43663 620 aa17.87■□□□□ 0.45
NPHP4-205ENST00000466897 CASTP20810 708 aaKnown RBP17.87■□□□□ 0.45
NPHP4-205ENST00000466897 RPS6KB1P23443 525 aa17.87■□□□□ 0.45
NPHP4-205ENST00000466897 ZNF157P51786 506 aaPredicted RBP17.87■□□□□ 0.45
NPHP4-205ENST00000466897 SEC23AQ15436 765 aa17.87■□□□□ 0.45
NPHP4-205ENST00000466897 RCSD1Q6JBY9 416 aa17.87■□□□□ 0.45
NPHP4-205ENST00000466897 RUFY3Q7L099 469 aa17.87■□□□□ 0.45
NPHP4-205ENST00000466897 RASAL3Q86YV0 1011 aa17.87■□□□□ 0.45
NPHP4-205ENST00000466897 SIAH1Q8IUQ4 282 aa17.87■□□□□ 0.45
NPHP4-205ENST00000466897 KIAA1683Q9H0B3 1180 aa17.87■□□□□ 0.45
NPHP4-205ENST00000466897 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.87■□□□□ 0.45
NPHP4-205ENST00000466897 TMX2Q9Y320 296 aa17.87■□□□□ 0.45
NPHP4-205ENST00000466897 ZHX2Q9Y6X8 837 aa17.87■□□□□ 0.45
NPHP4-205ENST00000466897 ERICH2A1L162 156 aa17.86■□□□□ 0.45
NPHP4-205ENST00000466897 C19orf81C9J6K1 198 aa17.86■□□□□ 0.45
NPHP4-205ENST00000466897 NMT2O60551 498 aa17.86■□□□□ 0.45
NPHP4-205ENST00000466897 EEF2P13639 858 aaKnown RBP17.86■□□□□ 0.45
NPHP4-205ENST00000466897 SH3D19Q5HYK7 790 aa17.86■□□□□ 0.45
NPHP4-205ENST00000466897 SPRYD7Q5W111 196 aa17.86■□□□□ 0.45
NPHP4-205ENST00000466897 ENAHQ8N8S7 591 aaPredicted RBP17.86■□□□□ 0.45
NPHP4-205ENST00000466897 IGDCC4Q8TDY8 1250 aa17.86■□□□□ 0.45
NPHP4-205ENST00000466897 OTUD5Q96G74 571 aa17.86■□□□□ 0.45
NPHP4-205ENST00000466897 KIF2CQ99661 725 aa17.86■□□□□ 0.45
NPHP4-205ENST00000466897 AGXT2Q9BYV1 514 aa17.86■□□□□ 0.45
NPHP4-205ENST00000466897 CYP46A1Q9Y6A2 500 aa17.86■□□□□ 0.45
NPHP4-205ENST00000466897 FAM155AB1AL88 458 aaPredicted RBP17.85■□□□□ 0.45
NPHP4-205ENST00000466897 USP17L10C9JJH3 530 aa17.85■□□□□ 0.45
NPHP4-205ENST00000466897 IRF6O14896 467 aa17.85■□□□□ 0.45
NPHP4-205ENST00000466897 TOP1P11387 765 aaKnown RBP17.85■□□□□ 0.45
NPHP4-205ENST00000466897 GJA5P36382 358 aa17.85■□□□□ 0.45
NPHP4-205ENST00000466897 LIFRP42702 1097 aa17.85■□□□□ 0.45
NPHP4-205ENST00000466897 BACE1P56817 501 aa17.85■□□□□ 0.45
NPHP4-205ENST00000466897 COL9A3Q14050 684 aaPredicted RBP17.85■□□□□ 0.45
NPHP4-205ENST00000466897 DEFB115Q30KQ5 88 aa17.85■□□□□ 0.45
NPHP4-205ENST00000466897 TMTC2Q8N394 836 aa17.85■□□□□ 0.45
NPHP4-205ENST00000466897 CNKSR2Q8WXI2 1034 aa17.85■□□□□ 0.45
NPHP4-205ENST00000466897 C12orf42Q96LP6 360 aa17.85■□□□□ 0.45
NPHP4-205ENST00000466897 ALDH8A1Q9H2A2 487 aaPredicted RBP17.85■□□□□ 0.45
NPHP4-205ENST00000466897 STX8Q9UNK0 236 aa17.85■□□□□ 0.45
NPHP4-205ENST00000466897 A0A1W2PRG0 241 aa17.84■□□□□ 0.45
NPHP4-205ENST00000466897 SH2B2O14492 632 aaPredicted RBP17.84■□□□□ 0.45
NPHP4-205ENST00000466897 IFIT3O14879 490 aaKnown RBP17.84■□□□□ 0.45
NPHP4-205ENST00000466897 ECE1P42892 770 aa17.84■□□□□ 0.45
NPHP4-205ENST00000466897 USP14P54578 494 aa17.84■□□□□ 0.45
NPHP4-205ENST00000466897 SPP2Q13103 211 aa17.84■□□□□ 0.45
NPHP4-205ENST00000466897 CCDC84Q86UT8 332 aaPredicted RBP17.84■□□□□ 0.45
NPHP4-205ENST00000466897 SGMS1Q86VZ5 419 aa17.84■□□□□ 0.45
NPHP4-205ENST00000466897 CLEC10AQ8IUN9 316 aa17.84■□□□□ 0.45
NPHP4-205ENST00000466897 GMCL1P1Q8NEA9 526 aa17.84■□□□□ 0.45
NPHP4-205ENST00000466897 LPAR1Q92633 364 aa17.84■□□□□ 0.45
NPHP4-205ENST00000466897 ZKSCAN3Q9BRR0 538 aa17.84■□□□□ 0.45
NPHP4-205ENST00000466897 LY9Q9HBG7 655 aa17.84■□□□□ 0.45
NPHP4-205ENST00000466897 CLIP2Q9UDT6 1046 aa17.84■□□□□ 0.45
NPHP4-205ENST00000466897 A0A0G2JLL6 359 aaPredicted RBP17.83■□□□□ 0.44
NPHP4-205ENST00000466897 GTF2A2P52657 109 aa17.83■□□□□ 0.44
NPHP4-205ENST00000466897 SNAPC2Q13487 334 aa17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms