RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 SNCAIPQ9Y6H5 919 aa13.67□□□□□ -0.22
SCN9A-204ENST00000452182 WDR19Q8NEZ3 1342 aa13.67□□□□□ -0.22
SCN9A-204ENST00000452182 PHIPQ8WWQ0 1821 aa13.67□□□□□ -0.22
SCN9A-204ENST00000452182 PTPRAP18433 802 aa13.66□□□□□ -0.22
SCN9A-204ENST00000452182 GUCY1A2P33402 732 aa13.66□□□□□ -0.22
SCN9A-204ENST00000452182 NOVP48745 357 aa13.66□□□□□ -0.22
SCN9A-204ENST00000452182 HUNKP57058 714 aa13.66□□□□□ -0.22
SCN9A-204ENST00000452182 FAM47AQ5JRC9 791 aa13.66□□□□□ -0.22
SCN9A-204ENST00000452182 NKX2-3Q8TAU0 364 aa13.66□□□□□ -0.22
SCN9A-204ENST00000452182 TBC1D32Q96NH3 1257 aa13.66□□□□□ -0.22
SCN9A-204ENST00000452182 PICK1Q9NRD5 415 aa13.66□□□□□ -0.22
SCN9A-204ENST00000452182 MPHOSPH10O00566 681 aaKnown RBP13.65□□□□□ -0.22
SCN9A-204ENST00000452182 MCM5P33992 734 aa13.65□□□□□ -0.22
SCN9A-204ENST00000452182 PPATQ06203 517 aa13.65□□□□□ -0.22
SCN9A-204ENST00000452182 SHROOM1Q2M3G4 852 aaPredicted RBP13.65□□□□□ -0.22
SCN9A-204ENST00000452182 CCDC178Q5BJE1 867 aa13.65□□□□□ -0.22
SCN9A-204ENST00000452182 IQCA1Q86XH1 822 aa13.65□□□□□ -0.22
SCN9A-204ENST00000452182 ERO1BQ86YB8 467 aa13.65□□□□□ -0.22
SCN9A-204ENST00000452182 JAKMIP1Q96N16 626 aaKnown RBP13.65□□□□□ -0.22
SCN9A-204ENST00000452182 SPDYE5A6NIY4 337 aa13.64□□□□□ -0.23
SCN9A-204ENST00000452182 USP17L5A8MUK1 530 aa13.64□□□□□ -0.23
SCN9A-204ENST00000452182 EXOSC10Q01780 885 aaKnown RBP13.64□□□□□ -0.23
SCN9A-204ENST00000452182 SEPT2Q15019 361 aa13.64□□□□□ -0.23
SCN9A-204ENST00000452182 CYB5R4Q7L1T6 521 aa13.64□□□□□ -0.23
SCN9A-204ENST00000452182 DHX32Q7L7V1 743 aaKnown RBP13.64□□□□□ -0.23
SCN9A-204ENST00000452182 SLC10A4Q96EP9 437 aa13.64□□□□□ -0.23
SCN9A-204ENST00000452182 CLMNQ96JQ2 1002 aa13.64□□□□□ -0.23
SCN9A-204ENST00000452182 TTC14Q96N46 770 aa13.64□□□□□ -0.23
SCN9A-204ENST00000452182 WDR18Q9BV38 432 aa13.64□□□□□ -0.23
SCN9A-204ENST00000452182 ZSWIM6Q9HCJ5 1215 aa13.64□□□□□ -0.23
SCN9A-204ENST00000452182 IL17RBQ9NRM6 502 aa13.64□□□□□ -0.23
SCN9A-204ENST00000452182 MTMR4Q9NYA4 1195 aa13.64□□□□□ -0.23
SCN9A-204ENST00000452182 SYNPO2Q9UMS6 1093 aa13.64□□□□□ -0.23
SCN9A-204ENST00000452182 PRR29P0C7W0 189 aa13.64□□□□□ -0.23
SCN9A-204ENST00000452182 RAB3GAP1Q15042 981 aa13.64□□□□□ -0.23
SCN9A-204ENST00000452182 BLOC1S2Q6QNY1 142 aa13.64□□□□□ -0.23
SCN9A-204ENST00000452182 DGKHQ86XP1 1220 aa13.64□□□□□ -0.23
SCN9A-204ENST00000452182 IL27Q8NEV9 243 aa13.64□□□□□ -0.23
SCN9A-204ENST00000452182 ANKS1AQ92625 1134 aa13.64□□□□□ -0.23
SCN9A-204ENST00000452182 CEP95Q96GE4 821 aa13.64□□□□□ -0.23
SCN9A-204ENST00000452182 ZSCAN10Q96SZ4 725 aaPredicted RBP13.64□□□□□ -0.23
SCN9A-204ENST00000452182 UBAC1Q9BSL1 405 aa13.64□□□□□ -0.23
SCN9A-204ENST00000452182 AS3MTQ9HBK9 375 aa13.64□□□□□ -0.23
SCN9A-204ENST00000452182 NYAP2Q9P242 653 aa13.64□□□□□ -0.23
SCN9A-204ENST00000452182 CASTP20810 708 aaKnown RBP13.63□□□□□ -0.23
SCN9A-204ENST00000452182 RPS6KB1P23443 525 aa13.63□□□□□ -0.23
SCN9A-204ENST00000452182 ANTXR2P58335 489 aa13.63□□□□□ -0.23
SCN9A-204ENST00000452182 ICA1Q05084 483 aa13.63□□□□□ -0.23
SCN9A-204ENST00000452182 PPIL2Q13356 520 aa13.63□□□□□ -0.23
SCN9A-204ENST00000452182 SART3Q15020 963 aaKnown RBP13.63□□□□□ -0.23
SCN9A-204ENST00000452182 RGMBQ6NW40 437 aa13.63□□□□□ -0.23
SCN9A-204ENST00000452182 RUFY3Q7L099 469 aa13.63□□□□□ -0.23
SCN9A-204ENST00000452182 SIAH1Q8IUQ4 282 aa13.63□□□□□ -0.23
SCN9A-204ENST00000452182 FBXL16Q8N461 479 aa13.63□□□□□ -0.23
SCN9A-204ENST00000452182 MKL1Q969V6 931 aa13.63□□□□□ -0.23
SCN9A-204ENST00000452182 TMEM87BQ96K49 555 aa13.63□□□□□ -0.23
SCN9A-204ENST00000452182 KIF2CQ99661 725 aa13.63□□□□□ -0.23
SCN9A-204ENST00000452182 ELP3Q9H9T3 547 aa13.63□□□□□ -0.23
SCN9A-204ENST00000452182 ABT1Q9ULW3 272 aaKnown RBP13.63□□□□□ -0.23
SCN9A-204ENST00000452182 AFG3L2Q9Y4W6 797 aa13.63□□□□□ -0.23
SCN9A-204ENST00000452182 ZHX2Q9Y6X8 837 aa13.63□□□□□ -0.23
SCN9A-204ENST00000452182 MYH4Q9Y623 1939 aa13.63□□□□□ -0.23
SCN9A-204ENST00000452182 RASSF10A6NK89 507 aa13.62□□□□□ -0.23
SCN9A-204ENST00000452182 PRC1O43663 620 aa13.62□□□□□ -0.23
SCN9A-204ENST00000452182 NMT2O60551 498 aa13.62□□□□□ -0.23
SCN9A-204ENST00000452182 TTLL1O95922 423 aa13.62□□□□□ -0.23
SCN9A-204ENST00000452182 ZBTB48P10074 688 aaPredicted RBP13.62□□□□□ -0.23
SCN9A-204ENST00000452182 C1QTNF8P60827 252 aa13.62□□□□□ -0.23
SCN9A-204ENST00000452182 COL9A3Q14050 684 aaPredicted RBP13.62□□□□□ -0.23
SCN9A-204ENST00000452182 RCSD1Q6JBY9 416 aa13.62□□□□□ -0.23
SCN9A-204ENST00000452182 ZNF280CQ8ND82 737 aa13.62□□□□□ -0.23
SCN9A-204ENST00000452182 IGDCC4Q8TDY8 1250 aa13.62□□□□□ -0.23
SCN9A-204ENST00000452182 OPTNQ96CV9 577 aa13.62□□□□□ -0.23
SCN9A-204ENST00000452182 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.62□□□□□ -0.23
SCN9A-204ENST00000452182 CYP46A1Q9Y6A2 500 aa13.62□□□□□ -0.23
SCN9A-204ENST00000452182 TNKSO95271 1327 aa13.62□□□□□ -0.23
SCN9A-204ENST00000452182 PTPRFP10586 1907 aa13.62□□□□□ -0.23
SCN9A-204ENST00000452182 ERICH2A1L162 156 aa13.61□□□□□ -0.23
SCN9A-204ENST00000452182 CXCL11O14625 94 aa13.61□□□□□ -0.23
SCN9A-204ENST00000452182 EEF2P13639 858 aaKnown RBP13.61□□□□□ -0.23
SCN9A-204ENST00000452182 LIFRP42702 1097 aa13.61□□□□□ -0.23
SCN9A-204ENST00000452182 ZNF157P51786 506 aaPredicted RBP13.61□□□□□ -0.23
SCN9A-204ENST00000452182 SEC23AQ15436 765 aa13.61□□□□□ -0.23
SCN9A-204ENST00000452182 ENAHQ8N8S7 591 aaPredicted RBP13.61□□□□□ -0.23
SCN9A-204ENST00000452182 CCDC102AQ96A19 550 aa13.61□□□□□ -0.23
SCN9A-204ENST00000452182 WNK4Q96J92 1243 aa13.61□□□□□ -0.23
SCN9A-204ENST00000452182 ZKSCAN3Q9BRR0 538 aa13.61□□□□□ -0.23
SCN9A-204ENST00000452182 SH2D4AQ9H788 454 aa13.61□□□□□ -0.23
SCN9A-204ENST00000452182 ARHGEF10LQ9HCE6 1279 aa13.61□□□□□ -0.23
SCN9A-204ENST00000452182 STX8Q9UNK0 236 aa13.61□□□□□ -0.23
SCN9A-204ENST00000452182 KCNH4Q9UQ05 1017 aa13.61□□□□□ -0.23
SCN9A-204ENST00000452182 TMX2Q9Y320 296 aa13.61□□□□□ -0.23
SCN9A-204ENST00000452182 C19orf81C9J6K1 198 aa13.61□□□□□ -0.23
SCN9A-204ENST00000452182 IFIT3O14879 490 aaKnown RBP13.61□□□□□ -0.23
SCN9A-204ENST00000452182 IRF6O14896 467 aa13.61□□□□□ -0.23
SCN9A-204ENST00000452182 SPRYD7Q5W111 196 aa13.61□□□□□ -0.23
SCN9A-204ENST00000452182 CHST3Q7LGC8 479 aa13.61□□□□□ -0.23
SCN9A-204ENST00000452182 RASAL3Q86YV0 1011 aa13.61□□□□□ -0.23
SCN9A-204ENST00000452182 CLEC10AQ8IUN9 316 aa13.61□□□□□ -0.23
SCN9A-204ENST00000452182 TMTC2Q8N394 836 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms