RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 GNAT2P19087 354 aa15.27■□□□□ 0.04
PRPF40A-203ENST00000448428 KIAA1683Q9H0B3 1180 aa15.27■□□□□ 0.04
PRPF40A-203ENST00000448428 ARPP21Q9UBL0 812 aaPredicted RBP15.27■□□□□ 0.04
PRPF40A-203ENST00000448428 MINDY4BA8MYZ0 360 aa15.26■□□□□ 0.03
PRPF40A-203ENST00000448428 FMNL1O95466 1100 aaPredicted RBP15.26■□□□□ 0.03
PRPF40A-203ENST00000448428 AKR1B1P15121 316 aa15.26■□□□□ 0.03
PRPF40A-203ENST00000448428 GCLCP48506 637 aaPredicted RBP15.26■□□□□ 0.03
PRPF40A-203ENST00000448428 ZYXQ15942 572 aaKnown RBP15.26■□□□□ 0.03
PRPF40A-203ENST00000448428 IFNL3Q8IZI9 196 aa15.26■□□□□ 0.03
PRPF40A-203ENST00000448428 ANKRD13CQ8N6S4 541 aa15.26■□□□□ 0.03
PRPF40A-203ENST00000448428 CCDC17Q96LX7 622 aa15.26■□□□□ 0.03
PRPF40A-203ENST00000448428 P2RX7Q99572 595 aaKnown RBP15.26■□□□□ 0.03
PRPF40A-203ENST00000448428 FEZ1Q99689 392 aa15.26■□□□□ 0.03
PRPF40A-203ENST00000448428 OSBPL3Q9H4L5 887 aa15.26■□□□□ 0.03
PRPF40A-203ENST00000448428 EPB41L4AQ9HCS5 686 aaPredicted RBP15.26■□□□□ 0.03
PRPF40A-203ENST00000448428 PTCH2Q9Y6C5 1203 aa15.26■□□□□ 0.03
PRPF40A-203ENST00000448428 DOCK3Q8IZD9 2030 aa15.26■□□□□ 0.03
PRPF40A-203ENST00000448428 A0A1W2PRG0 241 aa15.25■□□□□ 0.03
PRPF40A-203ENST00000448428 RGS19P49795 217 aa15.25■□□□□ 0.03
PRPF40A-203ENST00000448428 USP14P54578 494 aa15.25■□□□□ 0.03
PRPF40A-203ENST00000448428 SOX10P56693 466 aa15.25■□□□□ 0.03
PRPF40A-203ENST00000448428 IRX3P78415 501 aaPredicted RBP15.25■□□□□ 0.03
PRPF40A-203ENST00000448428 CCDC129Q6ZRS4 1044 aa15.25■□□□□ 0.03
PRPF40A-203ENST00000448428 TMEM179Q6ZVK1 233 aa15.25■□□□□ 0.03
PRPF40A-203ENST00000448428 SIAH1Q8IUQ4 282 aa15.25■□□□□ 0.03
PRPF40A-203ENST00000448428 STK11IPQ8N1F8 1099 aa15.25■□□□□ 0.03
PRPF40A-203ENST00000448428 C12orf42Q96LP6 360 aa15.25■□□□□ 0.03
PRPF40A-203ENST00000448428 SRRDQ9UH36 339 aa15.25■□□□□ 0.03
PRPF40A-203ENST00000448428 TRIM6-TRIM34B2RNG4 842 aa15.24■□□□□ 0.03
PRPF40A-203ENST00000448428 HOXD10P28358 340 aa15.24■□□□□ 0.03
PRPF40A-203ENST00000448428 TDO2P48775 406 aa15.24■□□□□ 0.03
PRPF40A-203ENST00000448428 PRMT2P55345 433 aa15.24■□□□□ 0.03
PRPF40A-203ENST00000448428 FCGRTP55899 365 aa15.24■□□□□ 0.03
PRPF40A-203ENST00000448428 CLEC10AQ8IUN9 316 aa15.24■□□□□ 0.03
PRPF40A-203ENST00000448428 FOXP2O15409 715 aa15.23■□□□□ 0.03
PRPF40A-203ENST00000448428 HERVK_113P62684 666 aa15.23■□□□□ 0.03
PRPF40A-203ENST00000448428 FAM110CQ1W6H9 321 aa15.23■□□□□ 0.03
PRPF40A-203ENST00000448428 POTEEQ6S8J3 1075 aa15.23■□□□□ 0.03
PRPF40A-203ENST00000448428 TICAM2Q86XR7 235 aa15.23■□□□□ 0.03
PRPF40A-203ENST00000448428 RILPL2Q969X0 211 aa15.23■□□□□ 0.03
PRPF40A-203ENST00000448428 ARMC5Q96C12 935 aa15.23■□□□□ 0.03
PRPF40A-203ENST00000448428 FAM227BQ96M60 508 aa15.23■□□□□ 0.03
PRPF40A-203ENST00000448428 NACAP1Q9BZK3 213 aa15.23■□□□□ 0.03
PRPF40A-203ENST00000448428 HELLSQ9NRZ9 838 aa15.23■□□□□ 0.03
PRPF40A-203ENST00000448428 USP17L15C9J2P7 530 aa15.22■□□□□ 0.03
PRPF40A-203ENST00000448428 USP17L13C9JLJ4 530 aa15.22■□□□□ 0.03
PRPF40A-203ENST00000448428 USP17L11C9JVI0 530 aa15.22■□□□□ 0.03
PRPF40A-203ENST00000448428 USP17L18D6R9N7 530 aa15.22■□□□□ 0.03
PRPF40A-203ENST00000448428 USP17L22D6RA61 530 aa15.22■□□□□ 0.03
PRPF40A-203ENST00000448428 USP17L17D6RBQ6 530 aa15.22■□□□□ 0.03
PRPF40A-203ENST00000448428 USP17L19D6RCP7 530 aa15.22■□□□□ 0.03
PRPF40A-203ENST00000448428 USP17L20D6RJB6 530 aa15.22■□□□□ 0.03
PRPF40A-203ENST00000448428 PEX10O60683 326 aa15.22■□□□□ 0.03
PRPF40A-203ENST00000448428 VCAM1P19320 739 aa15.22■□□□□ 0.03
PRPF40A-203ENST00000448428 RASA1P20936 1047 aa15.22■□□□□ 0.03
PRPF40A-203ENST00000448428 USP17L24Q0WX57 530 aa15.22■□□□□ 0.03
PRPF40A-203ENST00000448428 SLC9C1Q4G0N8 1177 aa15.22■□□□□ 0.03
PRPF40A-203ENST00000448428 KIAA1755Q5JYT7 1200 aa15.22■□□□□ 0.03
PRPF40A-203ENST00000448428 CATSPERGQ6ZRH7 1159 aa15.22■□□□□ 0.03
PRPF40A-203ENST00000448428 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.22■□□□□ 0.03
PRPF40A-203ENST00000448428 MKNK2Q9HBH9 465 aa15.22■□□□□ 0.03
PRPF40A-203ENST00000448428 TXNRD2Q9NNW7 524 aa15.22■□□□□ 0.03
PRPF40A-203ENST00000448428 RBPJLQ9UBG7 517 aa15.22■□□□□ 0.03
PRPF40A-203ENST00000448428 MORF4L1Q9UBU8 362 aa15.22■□□□□ 0.03
PRPF40A-203ENST00000448428 GABRQQ9UN88 632 aa15.22■□□□□ 0.03
PRPF40A-203ENST00000448428 ROBO3Q96MS0 1386 aa15.22■□□□□ 0.03
PRPF40A-203ENST00000448428 GREB1LQ9C091 1923 aaPredicted RBP15.21■□□□□ 0.03
PRPF40A-203ENST00000448428 MYPNQ86TC9 1320 aa15.21■□□□□ 0.03
PRPF40A-203ENST00000448428 A0A0D9SFI3 127 aa15.21■□□□□ 0.03
PRPF40A-203ENST00000448428 TNPO2O14787 897 aaKnown RBP15.21■□□□□ 0.03
PRPF40A-203ENST00000448428 PDE4AP27815 886 aa15.21■□□□□ 0.03
PRPF40A-203ENST00000448428 ICA1Q05084 483 aa15.21■□□□□ 0.03
PRPF40A-203ENST00000448428 PRKCZQ05513 592 aa15.21■□□□□ 0.03
PRPF40A-203ENST00000448428 NMIQ13287 307 aaPredicted RBP15.21■□□□□ 0.03
PRPF40A-203ENST00000448428 MCMDC2Q4G0Z9 681 aa15.21■□□□□ 0.03
PRPF40A-203ENST00000448428 VPS53Q5VIR6 699 aa15.21■□□□□ 0.03
PRPF40A-203ENST00000448428 NBPF11Q86T75 865 aa15.21■□□□□ 0.03
PRPF40A-203ENST00000448428 SH3TC2Q8TF17 1288 aa15.21■□□□□ 0.03
PRPF40A-203ENST00000448428 NAPBQ9H115 298 aa15.21■□□□□ 0.03
PRPF40A-203ENST00000448428 RPAP3Q9H6T3 665 aaPredicted RBP15.21■□□□□ 0.03
PRPF40A-203ENST00000448428 KANSL2Q9H9L4 492 aa15.21■□□□□ 0.03
PRPF40A-203ENST00000448428 ARHGEF10LQ9HCE6 1279 aa15.21■□□□□ 0.03
PRPF40A-203ENST00000448428 TMX2Q9Y320 296 aa15.21■□□□□ 0.03
PRPF40A-203ENST00000448428 EEF2P13639 858 aaKnown RBP15.2■□□□□ 0.02
PRPF40A-203ENST00000448428 SDSP20132 328 aa15.2■□□□□ 0.02
PRPF40A-203ENST00000448428 FLT3LGP49771 235 aa15.2■□□□□ 0.02
PRPF40A-203ENST00000448428 PPARAQ07869 468 aa15.2■□□□□ 0.02
PRPF40A-203ENST00000448428 Q3C1V9 767 aa15.2■□□□□ 0.02
PRPF40A-203ENST00000448428 GPRC5AQ8NFJ5 357 aa15.2■□□□□ 0.02
PRPF40A-203ENST00000448428 RAET1EQ8TD07 263 aa15.2■□□□□ 0.02
PRPF40A-203ENST00000448428 ZNF333Q96JL9 665 aa15.2■□□□□ 0.02
PRPF40A-203ENST00000448428 RLFQ13129 1914 aa15.19■□□□□ 0.02
PRPF40A-203ENST00000448428 PRDM1O75626 825 aa15.19■□□□□ 0.02
PRPF40A-203ENST00000448428 ATP2B2Q01814 1243 aa15.19■□□□□ 0.02
PRPF40A-203ENST00000448428 ZNF444Q8N0Y2 327 aaPredicted RBP15.19■□□□□ 0.02
PRPF40A-203ENST00000448428 COA7Q96BR5 231 aa15.19■□□□□ 0.02
PRPF40A-203ENST00000448428 PAGR1Q9BTK6 254 aa15.19■□□□□ 0.02
PRPF40A-203ENST00000448428 POTEFA5A3E0 1075 aa15.18■□□□□ 0.02
PRPF40A-203ENST00000448428 GRK4P32298 578 aa15.18■□□□□ 0.02
PRPF40A-203ENST00000448428 ERVK-9P63128 1117 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms