RNA–Protein interactions for RNA: ENST00000447868.5

UFD1-204, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 3

Gene UFD1, Length 596 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-204ENST00000447868 EFCC1Q9HA90 598 aa29.86■■■□□ 2.37
UFD1-204ENST00000447868 EMILIN3Q9NT22 766 aa29.86■■■□□ 2.37
UFD1-204ENST00000447868 PNMA3Q9UL41 463 aa29.86■■■□□ 2.37
UFD1-204ENST00000447868 ZSWIM8A7E2V4 1837 aa29.85■■■□□ 2.37
UFD1-204ENST00000447868 OSBPP22059 807 aa29.85■■■□□ 2.37
UFD1-204ENST00000447868 LACTBP83111 547 aaPredicted RBP29.85■■■□□ 2.37
UFD1-204ENST00000447868 KIF22Q14807 665 aa29.85■■■□□ 2.37
UFD1-204ENST00000447868 MCMDC2Q4G0Z9 681 aa29.85■■■□□ 2.37
UFD1-204ENST00000447868 TICAM2Q86XR7 235 aa29.85■■■□□ 2.37
UFD1-204ENST00000447868 ARHGAP39Q9C0H5 1083 aa29.85■■■□□ 2.37
UFD1-204ENST00000447868 NAPBQ9H115 298 aa29.85■■■□□ 2.37
UFD1-204ENST00000447868 SDSP20132 328 aa29.84■■■□□ 2.37
UFD1-204ENST00000447868 CCDC17Q96LX7 622 aa29.84■■■□□ 2.37
UFD1-204ENST00000447868 ROBO3Q96MS0 1386 aa29.83■■■□□ 2.37
UFD1-204ENST00000447868 CCDC85CA6NKD9 419 aa29.83■■■□□ 2.37
UFD1-204ENST00000447868 BCRP11274 1271 aa29.83■■■□□ 2.37
UFD1-204ENST00000447868 VPS53Q5VIR6 699 aa29.83■■■□□ 2.37
UFD1-204ENST00000447868 CLEC10AQ8IUN9 316 aa29.83■■■□□ 2.37
UFD1-204ENST00000447868 ASCC2Q9H1I8 757 aaPredicted RBP29.83■■■□□ 2.37
UFD1-204ENST00000447868 MKNK2Q9HBH9 465 aa29.83■■■□□ 2.37
UFD1-204ENST00000447868 FOXP2O15409 715 aa29.82■■■□□ 2.36
UFD1-204ENST00000447868 USP14P54578 494 aa29.82■■■□□ 2.36
UFD1-204ENST00000447868 ARHGEF6Q15052 776 aa29.82■■■□□ 2.36
UFD1-204ENST00000447868 FBXO46Q6PJ61 603 aaPredicted RBP29.82■■■□□ 2.36
UFD1-204ENST00000447868 KIAA1683Q9H0B3 1180 aa29.82■■■□□ 2.36
UFD1-204ENST00000447868 IRX3P78415 501 aaPredicted RBP29.81■■■□□ 2.36
UFD1-204ENST00000447868 TTC22Q5TAA0 569 aa29.81■■■□□ 2.36
UFD1-204ENST00000447868 ZNF589Q86UQ0 364 aaPredicted RBP29.81■■■□□ 2.36
UFD1-204ENST00000447868 HPS5Q9UPZ3 1129 aa29.81■■■□□ 2.36
UFD1-204ENST00000447868 A0A1W2PRG0 241 aa29.8■■■□□ 2.36
UFD1-204ENST00000447868 RASA1P20936 1047 aa29.8■■■□□ 2.36
UFD1-204ENST00000447868 ICA1Q05084 483 aa29.8■■■□□ 2.36
UFD1-204ENST00000447868 ANKRD13CQ8N6S4 541 aa29.8■■■□□ 2.36
UFD1-204ENST00000447868 DIAPH3Q9NSV4 1193 aa29.8■■■□□ 2.36
UFD1-204ENST00000447868 PRDM1O75626 825 aa29.79■■■□□ 2.36
UFD1-204ENST00000447868 GSPT1P15170 499 aaKnown RBP29.79■■■□□ 2.36
UFD1-204ENST00000447868 CTGFP29279 349 aa29.79■■■□□ 2.36
UFD1-204ENST00000447868 HOXA7P31268 230 aaPredicted RBP29.79■■■□□ 2.36
UFD1-204ENST00000447868 PPARAQ07869 468 aa29.79■■■□□ 2.36
UFD1-204ENST00000447868 C12orf42Q96LP6 360 aa29.79■■■□□ 2.36
UFD1-204ENST00000447868 PTPN22Q9Y2R2 807 aa29.79■■■□□ 2.36
UFD1-204ENST00000447868 PSMC4P43686 418 aa29.78■■■□□ 2.36
UFD1-204ENST00000447868 CWC27Q6UX04 472 aaKnown RBP29.78■■■□□ 2.36
UFD1-204ENST00000447868 ARHGEF10LQ9HCE6 1279 aa29.78■■■□□ 2.36
UFD1-204ENST00000447868 CCDC171Q6TFL3 1326 aa29.77■■■□□ 2.36
UFD1-204ENST00000447868 FMNL1O95466 1100 aaPredicted RBP29.77■■■□□ 2.36
UFD1-204ENST00000447868 SLC3A2P08195 630 aaKnown RBP29.77■■■□□ 2.36
UFD1-204ENST00000447868 ATP2B2Q01814 1243 aa29.77■■■□□ 2.36
UFD1-204ENST00000447868 SIAH1Q8IUQ4 282 aa29.77■■■□□ 2.36
UFD1-204ENST00000447868 P2RX7Q99572 595 aaKnown RBP29.77■■■□□ 2.36
UFD1-204ENST00000447868 ZNF287Q9HBT7 754 aa29.77■■■□□ 2.36
UFD1-204ENST00000447868 HIP1O00291 1037 aa29.76■■■□□ 2.35
UFD1-204ENST00000447868 VCAM1P19320 739 aa29.76■■■□□ 2.35
UFD1-204ENST00000447868 GCLCP48506 637 aaPredicted RBP29.76■■■□□ 2.35
UFD1-204ENST00000447868 ZNF444Q8N0Y2 327 aaPredicted RBP29.76■■■□□ 2.35
UFD1-204ENST00000447868 TRIM47Q96LD4 638 aa29.76■■■□□ 2.35
UFD1-204ENST00000447868 HSPD1P10809 573 aaKnown RBP29.75■■■□□ 2.35
UFD1-204ENST00000447868 CTDSPL2Q05D32 466 aa29.75■■■□□ 2.35
UFD1-204ENST00000447868 KANSL2Q9H9L4 492 aa29.75■■■□□ 2.35
UFD1-204ENST00000447868 MGAMO43451 1857 aa29.74■■■□□ 2.35
UFD1-204ENST00000447868 USP17L15C9J2P7 530 aa29.74■■■□□ 2.35
UFD1-204ENST00000447868 USP17L13C9JLJ4 530 aa29.74■■■□□ 2.35
UFD1-204ENST00000447868 USP17L11C9JVI0 530 aa29.74■■■□□ 2.35
UFD1-204ENST00000447868 USP17L18D6R9N7 530 aa29.74■■■□□ 2.35
UFD1-204ENST00000447868 USP17L22D6RA61 530 aa29.74■■■□□ 2.35
UFD1-204ENST00000447868 USP17L17D6RBQ6 530 aa29.74■■■□□ 2.35
UFD1-204ENST00000447868 USP17L19D6RCP7 530 aa29.74■■■□□ 2.35
UFD1-204ENST00000447868 USP17L20D6RJB6 530 aa29.74■■■□□ 2.35
UFD1-204ENST00000447868 EEF2P13639 858 aaKnown RBP29.74■■■□□ 2.35
UFD1-204ENST00000447868 MFAP1P55081 439 aaKnown RBP29.74■■■□□ 2.35
UFD1-204ENST00000447868 FCGRTP55899 365 aa29.74■■■□□ 2.35
UFD1-204ENST00000447868 HERVK_113P62684 666 aa29.74■■■□□ 2.35
UFD1-204ENST00000447868 PDE4BQ07343 736 aa29.74■■■□□ 2.35
UFD1-204ENST00000447868 USP17L24Q0WX57 530 aa29.74■■■□□ 2.35
UFD1-204ENST00000447868 CENPQQ7L2Z9 268 aaPredicted RBP29.74■■■□□ 2.35
UFD1-204ENST00000447868 GNL3Q9BVP2 549 aaKnown RBP eCLIP29.74■■■□□ 2.35
UFD1-204ENST00000447868 GREB1LQ9C091 1923 aaPredicted RBP29.73■■■□□ 2.35
UFD1-204ENST00000447868 ALX1Q15699 326 aa29.73■■■□□ 2.35
UFD1-204ENST00000447868 FAM110CQ1W6H9 321 aa29.73■■■□□ 2.35
UFD1-204ENST00000447868 RPAP3Q9H6T3 665 aaPredicted RBP29.73■■■□□ 2.35
UFD1-204ENST00000447868 SH2D4AQ9H788 454 aa29.73■■■□□ 2.35
UFD1-204ENST00000447868 TMX2Q9Y320 296 aa29.73■■■□□ 2.35
UFD1-204ENST00000447868 PEX10O60683 326 aa29.72■■■□□ 2.35
UFD1-204ENST00000447868 GNRH1P01148 92 aa29.72■■■□□ 2.35
UFD1-204ENST00000447868 FGAP02671 866 aa29.72■■■□□ 2.35
UFD1-204ENST00000447868 KIAA1755Q5JYT7 1200 aa29.72■■■□□ 2.35
UFD1-204ENST00000447868 CATSPERGQ6ZRH7 1159 aa29.72■■■□□ 2.35
UFD1-204ENST00000447868 PTCH2Q9Y6C5 1203 aa29.72■■■□□ 2.35
UFD1-204ENST00000447868 NEFLP07196 543 aa29.71■■■□□ 2.35
UFD1-204ENST00000447868 SPICE1Q8N0Z3 855 aa29.71■■■□□ 2.35
UFD1-204ENST00000447868 INCENPQ9NQS7 918 aa29.71■■■□□ 2.35
UFD1-204ENST00000447868 HOXD10P28358 340 aa29.7■■■□□ 2.35
UFD1-204ENST00000447868 FAM47AQ5JRC9 791 aa29.7■■■□□ 2.35
UFD1-204ENST00000447868 VCPKMTQ9H867 229 aa29.7■■■□□ 2.35
UFD1-204ENST00000447868 SRRDQ9UH36 339 aa29.7■■■□□ 2.35
UFD1-204ENST00000447868 RAD21O60216 631 aa29.69■■■□□ 2.34
UFD1-204ENST00000447868 TSPY3P0CV98 308 aa29.69■■■□□ 2.34
UFD1-204ENST00000447868 TSPY8P0CW00 308 aa29.69■■■□□ 2.34
UFD1-204ENST00000447868 PAGR1Q9BTK6 254 aa29.69■■■□□ 2.34
UFD1-204ENST00000447868 TANGO6Q9C0B7 1094 aa29.69■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms