RNA–Protein interactions for RNA: ENST00000423575.5

LINC00539-202, long intergenic non-protein coding RNA 539, humanhuman

TSL 3 BASIC

Gene LINC00539, Length 699 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-202ENST00000423575 SIAH1Q8IUQ4 282 aa14.29□□□□□ -0.12
LINC00539-202ENST00000423575 ACER1Q8TDN7 264 aa14.29□□□□□ -0.12
LINC00539-202ENST00000423575 CEP95Q96GE4 821 aa14.29□□□□□ -0.12
LINC00539-202ENST00000423575 CAPNS2Q96L46 248 aa14.29□□□□□ -0.12
LINC00539-202ENST00000423575 WDR18Q9BV38 432 aa14.29□□□□□ -0.12
LINC00539-202ENST00000423575 IL17RBQ9NRM6 502 aa14.29□□□□□ -0.12
LINC00539-202ENST00000423575 ZSWIM5Q9P217 1185 aa14.29□□□□□ -0.12
LINC00539-202ENST00000423575 A0A1W2PRG0 241 aa14.28□□□□□ -0.12
LINC00539-202ENST00000423575 TRIM75PA6NK02 468 aa14.28□□□□□ -0.12
LINC00539-202ENST00000423575 NT5C2P49902 561 aa14.28□□□□□ -0.12
LINC00539-202ENST00000423575 ANTXR2P58335 489 aa14.28□□□□□ -0.12
LINC00539-202ENST00000423575 SPP2Q13103 211 aa14.28□□□□□ -0.12
LINC00539-202ENST00000423575 GRM1Q13255 1194 aa14.28□□□□□ -0.12
LINC00539-202ENST00000423575 JAKMIP1Q96N16 626 aaKnown RBP14.28□□□□□ -0.12
LINC00539-202ENST00000423575 ATAD5Q96QE3 1844 aa14.28□□□□□ -0.12
LINC00539-202ENST00000423575 ZKSCAN3Q9BRR0 538 aa14.28□□□□□ -0.12
LINC00539-202ENST00000423575 KANSL2Q9H9L4 492 aa14.28□□□□□ -0.12
LINC00539-202ENST00000423575 MTMR4Q9NYA4 1195 aa14.28□□□□□ -0.12
LINC00539-202ENST00000423575 KCNH4Q9UQ05 1017 aa14.28□□□□□ -0.12
LINC00539-202ENST00000423575 AFG3L2Q9Y4W6 797 aa14.28□□□□□ -0.12
LINC00539-202ENST00000423575 MYH8P13535 1937 aa14.27□□□□□ -0.12
LINC00539-202ENST00000423575 ZBTB48P10074 688 aaPredicted RBP14.27□□□□□ -0.13
LINC00539-202ENST00000423575 EEF2P13639 858 aaKnown RBP14.27□□□□□ -0.13
LINC00539-202ENST00000423575 ECE1P42892 770 aa14.27□□□□□ -0.13
LINC00539-202ENST00000423575 CHST3Q7LGC8 479 aa14.27□□□□□ -0.13
LINC00539-202ENST00000423575 ZNF280CQ8ND82 737 aa14.27□□□□□ -0.13
LINC00539-202ENST00000423575 CCDC102AQ96A19 550 aa14.27□□□□□ -0.13
LINC00539-202ENST00000423575 NEK1Q96PY6 1258 aa14.27□□□□□ -0.13
LINC00539-202ENST00000423575 ZIC5Q96T25 663 aa14.27□□□□□ -0.13
LINC00539-202ENST00000423575 AS3MTQ9HBK9 375 aa14.27□□□□□ -0.13
LINC00539-202ENST00000423575 TCP11L1Q9NUJ3 509 aa14.27□□□□□ -0.13
LINC00539-202ENST00000423575 TNKSO95271 1327 aa14.26□□□□□ -0.13
LINC00539-202ENST00000423575 PRC1O43663 620 aa14.26□□□□□ -0.13
LINC00539-202ENST00000423575 CPA1P15085 419 aa14.26□□□□□ -0.13
LINC00539-202ENST00000423575 NOVP48745 357 aa14.26□□□□□ -0.13
LINC00539-202ENST00000423575 VEGFBP49765 207 aa14.26□□□□□ -0.13
LINC00539-202ENST00000423575 ANAPC15P60006 121 aa14.26□□□□□ -0.13
LINC00539-202ENST00000423575 ATP2B2Q01814 1243 aa14.26□□□□□ -0.13
LINC00539-202ENST00000423575 MTMR2Q13614 643 aa14.26□□□□□ -0.13
LINC00539-202ENST00000423575 RCSD1Q6JBY9 416 aa14.26□□□□□ -0.13
LINC00539-202ENST00000423575 IQCA1Q86XH1 822 aa14.26□□□□□ -0.13
LINC00539-202ENST00000423575 IL17RAQ96F46 866 aa14.26□□□□□ -0.13
LINC00539-202ENST00000423575 MS4A4AQ96JQ5 239 aa14.26□□□□□ -0.13
LINC00539-202ENST00000423575 ZSCAN10Q96SZ4 725 aaPredicted RBP14.26□□□□□ -0.13
LINC00539-202ENST00000423575 FEZ1Q99689 392 aa14.26□□□□□ -0.13
LINC00539-202ENST00000423575 UBAC1Q9BSL1 405 aa14.26□□□□□ -0.13
LINC00539-202ENST00000423575 TBC1D2Q9BYX2 928 aa14.26□□□□□ -0.13
LINC00539-202ENST00000423575 C22orf23Q9BZE7 217 aa14.26□□□□□ -0.13
LINC00539-202ENST00000423575 NYAP2Q9P242 653 aa14.26□□□□□ -0.13
LINC00539-202ENST00000423575 PHIPQ8WWQ0 1821 aa14.25□□□□□ -0.13
LINC00539-202ENST00000423575 CXCL11O14625 94 aa14.25□□□□□ -0.13
LINC00539-202ENST00000423575 AOC2O75106 756 aa14.25□□□□□ -0.13
LINC00539-202ENST00000423575 TTLL1O95922 423 aa14.25□□□□□ -0.13
LINC00539-202ENST00000423575 MCM5P33992 734 aa14.25□□□□□ -0.13
LINC00539-202ENST00000423575 RBM25P49756 843 aaKnown RBP14.25□□□□□ -0.13
LINC00539-202ENST00000423575 SNAPC2Q13487 334 aa14.25□□□□□ -0.13
LINC00539-202ENST00000423575 DGKZQ13574 1117 aa14.25□□□□□ -0.13
LINC00539-202ENST00000423575 MOGSQ13724 837 aa14.25□□□□□ -0.13
LINC00539-202ENST00000423575 ZYXQ15942 572 aaKnown RBP14.25□□□□□ -0.13
LINC00539-202ENST00000423575 LRRC47Q8N1G4 583 aaKnown RBP14.25□□□□□ -0.13
LINC00539-202ENST00000423575 ENAHQ8N8S7 591 aaPredicted RBP14.25□□□□□ -0.13
LINC00539-202ENST00000423575 TCEANC2Q96MN5 208 aa14.25□□□□□ -0.13
LINC00539-202ENST00000423575 KIAA1683Q9H0B3 1180 aa14.25□□□□□ -0.13
LINC00539-202ENST00000423575 UPF2Q9HAU5 1272 aaKnown RBP14.25□□□□□ -0.13
LINC00539-202ENST00000423575 ARHGEF10LQ9HCE6 1279 aa14.25□□□□□ -0.13
LINC00539-202ENST00000423575 GPHNQ9NQX3 736 aaPredicted RBP14.25□□□□□ -0.13
LINC00539-202ENST00000423575 CLIP2Q9UDT6 1046 aa14.25□□□□□ -0.13
LINC00539-202ENST00000423575 STX8Q9UNK0 236 aa14.25□□□□□ -0.13
LINC00539-202ENST00000423575 WDR33Q9C0J8 1336 aaKnown RBP14.24□□□□□ -0.13
LINC00539-202ENST00000423575 A0A0G2JLL6 359 aaPredicted RBP14.24□□□□□ -0.13
LINC00539-202ENST00000423575 USP17L10C9JJH3 530 aa14.24□□□□□ -0.13
LINC00539-202ENST00000423575 IFIT3O14879 490 aaKnown RBP14.24□□□□□ -0.13
LINC00539-202ENST00000423575 CASTP20810 708 aaKnown RBP14.24□□□□□ -0.13
LINC00539-202ENST00000423575 PSMA5P28066 241 aa14.24□□□□□ -0.13
LINC00539-202ENST00000423575 GTF2A2P52657 109 aa14.24□□□□□ -0.13
LINC00539-202ENST00000423575 HMGCS2P54868 508 aa14.24□□□□□ -0.13
LINC00539-202ENST00000423575 BACE1P56817 501 aa14.24□□□□□ -0.13
LINC00539-202ENST00000423575 EXOSC10Q01780 885 aaKnown RBP14.24□□□□□ -0.13
LINC00539-202ENST00000423575 NOGQ13253 232 aa14.24□□□□□ -0.13
LINC00539-202ENST00000423575 SEC23AQ15436 765 aa14.24□□□□□ -0.13
LINC00539-202ENST00000423575 SH3D19Q5HYK7 790 aa14.24□□□□□ -0.13
LINC00539-202ENST00000423575 PPP4R3BQ5MIZ7 849 aa14.24□□□□□ -0.13
LINC00539-202ENST00000423575 BLOC1S2Q6QNY1 142 aa14.24□□□□□ -0.13
LINC00539-202ENST00000423575 DHX32Q7L7V1 743 aaKnown RBP14.24□□□□□ -0.13
LINC00539-202ENST00000423575 PRRT2Q7Z6L0 340 aaPredicted RBP14.24□□□□□ -0.13
LINC00539-202ENST00000423575 BRI3BPQ8WY22 251 aa14.24□□□□□ -0.13
LINC00539-202ENST00000423575 TBC1D32Q96NH3 1257 aa14.24□□□□□ -0.13
LINC00539-202ENST00000423575 LRRC2Q9BYS8 371 aa14.24□□□□□ -0.13
LINC00539-202ENST00000423575 UPF3BQ9BZI7 483 aaKnown RBP14.24□□□□□ -0.13
LINC00539-202ENST00000423575 TM6SF1Q9BZW5 370 aa14.24□□□□□ -0.13
LINC00539-202ENST00000423575 SENP2Q9HC62 589 aa14.24□□□□□ -0.13
LINC00539-202ENST00000423575 ZSWIM6Q9HCJ5 1215 aa14.24□□□□□ -0.13
LINC00539-202ENST00000423575 EMILIN3Q9NT22 766 aa14.24□□□□□ -0.13
LINC00539-202ENST00000423575 TMX2Q9Y320 296 aa14.24□□□□□ -0.13
LINC00539-202ENST00000423575 CEP350Q5VT06 3117 aa14.24□□□□□ -0.13
LINC00539-202ENST00000423575 WDR19Q8NEZ3 1342 aa14.23□□□□□ -0.13
LINC00539-202ENST00000423575 CCL15-CCL14A0A0B4J2E2 113 aa14.23□□□□□ -0.13
LINC00539-202ENST00000423575 SH2B2O14492 632 aaPredicted RBP14.23□□□□□ -0.13
LINC00539-202ENST00000423575 HMGB1P09429 215 aaKnown RBP14.23□□□□□ -0.13
LINC00539-202ENST00000423575 RPS6KB1P23443 525 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms