RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 CDK8P49336 464 aa22.91■■□□□ 1.26
SF3A1-202ENST00000411423 FAM110CQ1W6H9 321 aa22.91■■□□□ 1.26
SF3A1-202ENST00000411423 C16orf86Q6ZW13 317 aa22.91■■□□□ 1.26
SF3A1-202ENST00000411423 SIAH1Q8IUQ4 282 aa22.91■■□□□ 1.26
SF3A1-202ENST00000411423 C12orf42Q96LP6 360 aa22.91■■□□□ 1.26
SF3A1-202ENST00000411423 TXNRD2Q9NNW7 524 aa22.91■■□□□ 1.26
SF3A1-202ENST00000411423 CABP5Q9NP86 173 aa22.91■■□□□ 1.26
SF3A1-202ENST00000411423 ZFYP08048 801 aaPredicted RBP22.9■■□□□ 1.26
SF3A1-202ENST00000411423 FCGRTP55899 365 aa22.9■■□□□ 1.26
SF3A1-202ENST00000411423 IRX6P78412 446 aaPredicted RBP22.9■■□□□ 1.26
SF3A1-202ENST00000411423 PABPC4Q13310 644 aaKnown RBP eCLIP22.9■■□□□ 1.26
SF3A1-202ENST00000411423 SLC9C1Q4G0N8 1177 aa22.9■■□□□ 1.26
SF3A1-202ENST00000411423 KIAA1755Q5JYT7 1200 aa22.9■■□□□ 1.26
SF3A1-202ENST00000411423 B4GALNT3Q6L9W6 998 aa22.9■■□□□ 1.26
SF3A1-202ENST00000411423 FSD1Q9BTV5 496 aa22.9■■□□□ 1.26
SF3A1-202ENST00000411423 KIAA1683Q9H0B3 1180 aa22.9■■□□□ 1.26
SF3A1-202ENST00000411423 SWAP70Q9UH65 585 aa22.9■■□□□ 1.26
SF3A1-202ENST00000411423 MKI67P46013 3256 aaKnown RBP22.9■■□□□ 1.26
SF3A1-202ENST00000411423 MPHOSPH10O00566 681 aaKnown RBP22.89■■□□□ 1.25
SF3A1-202ENST00000411423 ZMYM1Q5SVZ6 1142 aa22.89■■□□□ 1.25
SF3A1-202ENST00000411423 MYH8P13535 1937 aa22.88■■□□□ 1.25
SF3A1-202ENST00000411423 FOXP2O15409 715 aa22.88■■□□□ 1.25
SF3A1-202ENST00000411423 MYCP01106 439 aaPredicted RBP22.88■■□□□ 1.25
SF3A1-202ENST00000411423 GCLCP48506 637 aaPredicted RBP22.88■■□□□ 1.25
SF3A1-202ENST00000411423 PRMT2P55345 433 aa22.88■■□□□ 1.25
SF3A1-202ENST00000411423 HERVK_113P62684 666 aa22.88■■□□□ 1.25
SF3A1-202ENST00000411423 IRX3P78415 501 aaPredicted RBP22.88■■□□□ 1.25
SF3A1-202ENST00000411423 SBK1Q52WX2 424 aa22.88■■□□□ 1.25
SF3A1-202ENST00000411423 FEZ1Q99689 392 aa22.88■■□□□ 1.25
SF3A1-202ENST00000411423 RWDD1Q9H446 243 aaPredicted RBP22.88■■□□□ 1.25
SF3A1-202ENST00000411423 MORF4L1Q9UBU8 362 aa22.88■■□□□ 1.25
SF3A1-202ENST00000411423 RBBP6Q7Z6E9 1792 aaKnown RBP22.88■■□□□ 1.25
SF3A1-202ENST00000411423 VCAM1P19320 739 aa22.87■■□□□ 1.25
SF3A1-202ENST00000411423 Q3C1V9 767 aa22.87■■□□□ 1.25
SF3A1-202ENST00000411423 CCDC129Q6ZRS4 1044 aa22.87■■□□□ 1.25
SF3A1-202ENST00000411423 TMEM179Q6ZVK1 233 aa22.87■■□□□ 1.25
SF3A1-202ENST00000411423 STK11IPQ8N1F8 1099 aa22.87■■□□□ 1.25
SF3A1-202ENST00000411423 RBPJLQ9UBG7 517 aa22.87■■□□□ 1.25
SF3A1-202ENST00000411423 ARPP21Q9UBL0 812 aaPredicted RBP22.87■■□□□ 1.25
SF3A1-202ENST00000411423 DOCK3Q8IZD9 2030 aa22.86■■□□□ 1.25
SF3A1-202ENST00000411423 HOXD10P28358 340 aa22.86■■□□□ 1.25
SF3A1-202ENST00000411423 RAET1EQ8TD07 263 aa22.86■■□□□ 1.25
SF3A1-202ENST00000411423 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.86■■□□□ 1.25
SF3A1-202ENST00000411423 ZBTB47Q9UFB7 747 aaPredicted RBP22.86■■□□□ 1.25
SF3A1-202ENST00000411423 PLXNB2O15031 1838 aa22.85■■□□□ 1.25
SF3A1-202ENST00000411423 TNPO2O14787 897 aaKnown RBP22.85■■□□□ 1.25
SF3A1-202ENST00000411423 CNMDO75829 334 aa22.85■■□□□ 1.25
SF3A1-202ENST00000411423 EN2P19622 333 aaPredicted RBP22.85■■□□□ 1.25
SF3A1-202ENST00000411423 FLT3LGP49771 235 aa22.85■■□□□ 1.25
SF3A1-202ENST00000411423 NUCB1Q02818 461 aa22.85■■□□□ 1.25
SF3A1-202ENST00000411423 MTFR1Q15390 333 aa22.85■■□□□ 1.25
SF3A1-202ENST00000411423 GIMAP6Q6P9H5 292 aa22.85■■□□□ 1.25
SF3A1-202ENST00000411423 CATSPERGQ6ZRH7 1159 aa22.85■■□□□ 1.25
SF3A1-202ENST00000411423 DDRGK1Q96HY6 314 aa22.85■■□□□ 1.25
SF3A1-202ENST00000411423 ROBO3Q96MS0 1386 aa22.85■■□□□ 1.25
SF3A1-202ENST00000411423 GREB1LQ9C091 1923 aaPredicted RBP22.84■■□□□ 1.25
SF3A1-202ENST00000411423 MINDY4BA8MYZ0 360 aa22.84■■□□□ 1.25
SF3A1-202ENST00000411423 PATL2C9JE40 543 aaKnown RBP22.84■■□□□ 1.25
SF3A1-202ENST00000411423 GRK4P32298 578 aa22.84■■□□□ 1.25
SF3A1-202ENST00000411423 USP14P54578 494 aa22.84■■□□□ 1.25
SF3A1-202ENST00000411423 CHD1LQ86WJ1 897 aa22.84■■□□□ 1.25
SF3A1-202ENST00000411423 IFNL3Q8IZI9 196 aa22.84■■□□□ 1.25
SF3A1-202ENST00000411423 RPAP3Q9H6T3 665 aaPredicted RBP22.84■■□□□ 1.25
SF3A1-202ENST00000411423 TAOK2Q9UL54 1235 aa22.84■■□□□ 1.25
SF3A1-202ENST00000411423 USP17L15C9J2P7 530 aa22.83■■□□□ 1.25
SF3A1-202ENST00000411423 USP17L13C9JLJ4 530 aa22.83■■□□□ 1.25
SF3A1-202ENST00000411423 USP17L11C9JVI0 530 aa22.83■■□□□ 1.25
SF3A1-202ENST00000411423 USP17L18D6R9N7 530 aa22.83■■□□□ 1.25
SF3A1-202ENST00000411423 USP17L22D6RA61 530 aa22.83■■□□□ 1.25
SF3A1-202ENST00000411423 USP17L17D6RBQ6 530 aa22.83■■□□□ 1.25
SF3A1-202ENST00000411423 USP17L19D6RCP7 530 aa22.83■■□□□ 1.25
SF3A1-202ENST00000411423 USP17L20D6RJB6 530 aa22.83■■□□□ 1.25
SF3A1-202ENST00000411423 RASA1P20936 1047 aa22.83■■□□□ 1.25
SF3A1-202ENST00000411423 USP17L24Q0WX57 530 aa22.83■■□□□ 1.25
SF3A1-202ENST00000411423 NBPF11Q86T75 865 aa22.83■■□□□ 1.25
SF3A1-202ENST00000411423 PLEKHM2Q8IWE5 1019 aa22.83■■□□□ 1.25
SF3A1-202ENST00000411423 AMOTL1Q8IY63 956 aa22.83■■□□□ 1.25
SF3A1-202ENST00000411423 EVI5LQ96CN4 794 aa22.83■■□□□ 1.25
SF3A1-202ENST00000411423 ELNP15502 786 aa22.82■■□□□ 1.24
SF3A1-202ENST00000411423 GNAT2P19087 354 aa22.82■■□□□ 1.24
SF3A1-202ENST00000411423 ICA1Q05084 483 aa22.82■■□□□ 1.24
SF3A1-202ENST00000411423 CCDC17Q96LX7 622 aa22.82■■□□□ 1.24
SF3A1-202ENST00000411423 PAGR1Q9BTK6 254 aa22.82■■□□□ 1.24
SF3A1-202ENST00000411423 PORCNQ9H237 461 aa22.82■■□□□ 1.24
SF3A1-202ENST00000411423 GJD2Q9UKL4 321 aa22.82■■□□□ 1.24
SF3A1-202ENST00000411423 RLFQ13129 1914 aa22.82■■□□□ 1.24
SF3A1-202ENST00000411423 APPP05067 770 aa22.81■■□□□ 1.24
SF3A1-202ENST00000411423 TDO2P48775 406 aa22.81■■□□□ 1.24
SF3A1-202ENST00000411423 ERVK-9P63128 1117 aa22.81■■□□□ 1.24
SF3A1-202ENST00000411423 ERVK-24P63145 666 aa22.81■■□□□ 1.24
SF3A1-202ENST00000411423 LRRFIP1Q32MZ4 808 aaKnown RBP22.81■■□□□ 1.24
SF3A1-202ENST00000411423 VPS53Q5VIR6 699 aa22.81■■□□□ 1.24
SF3A1-202ENST00000411423 FAM227BQ96M60 508 aa22.81■■□□□ 1.24
SF3A1-202ENST00000411423 TMX2Q9Y320 296 aa22.81■■□□□ 1.24
SF3A1-202ENST00000411423 A0A0D9SFI3 127 aa22.8■■□□□ 1.24
SF3A1-202ENST00000411423 SPDYE16A6NNV3 312 aaPredicted RBP22.8■■□□□ 1.24
SF3A1-202ENST00000411423 ADCY3O60266 1144 aa22.8■■□□□ 1.24
SF3A1-202ENST00000411423 PRDM1O75626 825 aa22.8■■□□□ 1.24
SF3A1-202ENST00000411423 EEF2P13639 858 aaKnown RBP22.8■■□□□ 1.24
SF3A1-202ENST00000411423 IRF5Q13568 498 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms