RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 GRIN2BQ13224 1484 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 H0YCG3 227 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 RASIP1Q5U651 963 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 KLHDC4Q8TBB5 520 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 SCYL1Q96KG9 808 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 RPS6KC1Q96S38 1066 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 LLPHQ9BRT6 129 aaKnown RBP8.67□□□□□ -1.02
SYNE1-210ENST00000409694 IL15P40933 162 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-210ENST00000409694 ZNF622Q969S3 477 aaKnown RBP eCLIP8.67□□□□□ -1.02
SYNE1-210ENST00000409694 TTC25Q96NG3 672 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 ANGPTL2Q9UKU9 493 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 CFTRP13569 1480 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 GSTA4O15217 222 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 TMTC3Q6ZXV5 915 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 FAM186BQ8IYM0 893 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 POMGNT1Q8WZA1 660 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 SETDB2Q96T68 719 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 EYA3Q99504 573 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 SNRPA1P09661 255 aaKnown RBP8.66□□□□□ -1.02
SYNE1-210ENST00000409694 AKNAD1Q5T1N1 836 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 TMTC4Q5T4D3 741 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 PPP1R2P3Q6NXS1 205 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 HDAC11Q96DB2 347 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 SERPINI1Q99574 410 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 TSC1Q92574 1164 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 BAG2O95816 211 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 IFNA8P32881 189 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 HADHQ16836 314 aaKnown RBP8.66□□□□□ -1.02
SYNE1-210ENST00000409694 OPTNQ96CV9 577 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 MRRFQ96E11 262 aaKnown RBP8.66□□□□□ -1.02
SYNE1-210ENST00000409694 CLSTN2Q9H4D0 955 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 SLC13A4Q9UKG4 626 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 SUN1O94901 812 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 CYB5RLQ6IPT4 315 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 SLC17A8Q8NDX2 589 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 ARHGAP45Q92619 1136 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 SCOCQ9UIL1 159 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 MAST3O60307 1309 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 ASXL1Q8IXJ9 1541 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 ARHGEF35A5YM69 484 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 TMEM247A6NEH6 219 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 HEXIM1O94992 359 aaKnown RBP8.66□□□□□ -1.02
SYNE1-210ENST00000409694 PPP2R5BQ15173 497 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 CCDC169A6NNP5 214 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 PODNQ7Z5L7 613 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 ZBTB21Q9ULJ3 1066 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 DEXIO95424 95 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 PACSIN2Q9UNF0 486 aaPredicted RBP8.66□□□□□ -1.02
SYNE1-210ENST00000409694 CAPN7Q9Y6W3 813 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 EXOC5O00471 708 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 LCA5Q86VQ0 697 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 CFAP61Q8NHU2 1237 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 NUDT16Q96DE0 195 aaKnown RBP8.66□□□□□ -1.02
SYNE1-210ENST00000409694 LRRC37BQ96QE4 947 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 IFIH1Q9BYX4 1025 aaKnown RBP8.66□□□□□ -1.02
SYNE1-210ENST00000409694 AZI2Q9H6S1 392 aa8.66□□□□□ -1.02
SYNE1-210ENST00000409694 NOP14P78316 857 aaKnown RBP8.65□□□□□ -1.02
SYNE1-210ENST00000409694 IL9RQ01113 521 aa8.65□□□□□ -1.02
SYNE1-210ENST00000409694 DNM1Q05193 864 aaKnown RBP8.65□□□□□ -1.02
SYNE1-210ENST00000409694 LRRC8CQ8TDW0 803 aa8.65□□□□□ -1.02
SYNE1-210ENST00000409694 TTLL3Q9Y4R7 772 aa8.65□□□□□ -1.02
SYNE1-210ENST00000409694 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.65□□□□□ -1.02
SYNE1-210ENST00000409694 OAS2P29728 719 aaKnown RBP8.65□□□□□ -1.02
SYNE1-210ENST00000409694 ECE1P42892 770 aa8.65□□□□□ -1.02
SYNE1-210ENST00000409694 PICALMQ13492 652 aa8.65□□□□□ -1.02
SYNE1-210ENST00000409694 MLKLQ8NB16 471 aa8.65□□□□□ -1.02
SYNE1-210ENST00000409694 CCHCR1Q8TD31 782 aa8.65□□□□□ -1.02
SYNE1-210ENST00000409694 PPWD1Q96BP3 646 aaKnown RBP8.65□□□□□ -1.02
SYNE1-210ENST00000409694 RBM8AQ9Y5S9 174 aaKnown RBP8.65□□□□□ -1.02
SYNE1-210ENST00000409694 ZFXP17010 805 aaPredicted RBP8.65□□□□□ -1.02
SYNE1-210ENST00000409694 VPS41P49754 854 aa8.65□□□□□ -1.02
SYNE1-210ENST00000409694 MCTP2Q6DN12 878 aa8.65□□□□□ -1.02
SYNE1-210ENST00000409694 MAP7D3Q8IWC1 876 aa8.65□□□□□ -1.02
SYNE1-210ENST00000409694 ESYT1Q9BSJ8 1104 aa8.65□□□□□ -1.02
SYNE1-210ENST00000409694 NEUROG2Q9H2A3 272 aa8.65□□□□□ -1.02
SYNE1-210ENST00000409694 CEP104O60308 925 aa8.65□□□□□ -1.02
SYNE1-210ENST00000409694 PDE4DQ08499 809 aa8.65□□□□□ -1.02
SYNE1-210ENST00000409694 SESN3P58005 492 aa8.65□□□□□ -1.02
SYNE1-210ENST00000409694 RNF207Q6ZRF8 634 aa8.65□□□□□ -1.02
SYNE1-210ENST00000409694 CSGALNACT2Q8N6G5 542 aa8.65□□□□□ -1.02
SYNE1-210ENST00000409694 SLC5A4Q9NY91 659 aa8.65□□□□□ -1.02
SYNE1-210ENST00000409694 ANKRD36BQ8N2N9 1353 aa8.65□□□□□ -1.03
SYNE1-210ENST00000409694 PASKQ96RG2 1323 aa8.65□□□□□ -1.03
SYNE1-210ENST00000409694 VWA3AA6NCI4 1184 aa8.65□□□□□ -1.03
SYNE1-210ENST00000409694 TRIM27P14373 513 aa8.65□□□□□ -1.03
SYNE1-210ENST00000409694 CDV3Q9UKY7 258 aaKnown RBP8.65□□□□□ -1.03
SYNE1-210ENST00000409694 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.65□□□□□ -1.03
SYNE1-210ENST00000409694 DDX41Q9UJV9 622 aaKnown RBP8.65□□□□□ -1.03
SYNE1-210ENST00000409694 PCYT1AP49585 367 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 IFNL2Q8IZJ0 200 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 CAPS2Q9BXY5 557 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 NCOA1Q15788 1441 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 OTUD6AQ7L8S5 288 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 MCF2L2Q86YR7 1114 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 USP6NLQ92738 828 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 NT5C3AQ9H0P0 336 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 SPDYE16A6NNV3 312 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-210ENST00000409694 GRIN1Q05586 938 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 SPDYE2Q495Y8 402 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 FGFR1OP2Q9NVK5 253 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms