RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 NUTM2EB1AL46 878 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-203ENST00000409050 PRPF6O94906 941 aaKnown RBP6.74□□□□□ -1.33
SCN1A-203ENST00000409050 ATP6V1AP38606 617 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 ARL1P40616 181 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-203ENST00000409050 KLHL30Q0D2K2 578 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 SLFN12Q8IYM2 578 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 SLC27A2O14975 620 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 ZBTB7BO15156 539 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-203ENST00000409050 IGSF3O75054 1194 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 RAPGEF3O95398 923 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 BRD1O95696 1058 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 MCM7P33993 719 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 KARSQ15046 597 aaKnown RBP6.74□□□□□ -1.33
SCN1A-203ENST00000409050 OTUD6AQ7L8S5 288 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 PEX26Q7Z412 305 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 IP6K1Q92551 441 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 CCDC85AQ96PX6 553 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-203ENST00000409050 TACO1Q9BSH4 297 aaKnown RBP6.74□□□□□ -1.33
SCN1A-203ENST00000409050 MCM9Q9NXL9 1143 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 WDR7Q9Y4E6 1490 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 RGS16O15492 202 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-203ENST00000409050 PDE8AO60658 829 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 KRT9P35527 623 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 MAP2K2P36507 400 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 SLC4A8Q2Y0W8 1093 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 SNRKQ9NRH2 765 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 STK17AQ9UEE5 414 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 CTNND2Q9UQB3 1225 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 DIS3Q9Y2L1 958 aaKnown RBP6.74□□□□□ -1.33
SCN1A-203ENST00000409050 CLGNO14967 610 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 ZNF202O95125 648 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 KRT26Q7Z3Y9 468 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 CAPZA3Q96KX2 299 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 GPR108Q9NPR9 543 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 ASIC3Q9UHC3 531 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 IPO11Q9UI26 975 aaKnown RBP6.74□□□□□ -1.33
SCN1A-203ENST00000409050 SEC23IPQ9Y6Y8 1000 aaKnown RBP6.74□□□□□ -1.33
SCN1A-203ENST00000409050 BLMP54132 1417 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-203ENST00000409050 IRS4O14654 1257 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-203ENST00000409050 IKBKBO14920 756 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 CMA1P23946 247 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 HSPA1LP34931 641 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 LPIN2Q92539 896 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 CBX8Q9HC52 389 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 LRWD1Q9UFC0 647 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 ADGRL2O95490 1459 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 DDAH1O94760 285 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 FOSP01100 380 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-203ENST00000409050 ATP5JP18859 108 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 STAT1P42224 750 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 SLC12A2P55011 1212 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 ETF1P62495 437 aaKnown RBP6.73□□□□□ -1.33
SCN1A-203ENST00000409050 EIF4A2Q14240 407 aaKnown RBP6.73□□□□□ -1.33
SCN1A-203ENST00000409050 CDC37Q16543 378 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-203ENST00000409050 ANKRD20A4Q4UJ75 823 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 ANKRD20A8PQ5CZ79 823 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 ANKRD20A2Q5SQ80 823 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 ANKRD20A1Q5TYW2 823 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 EP400NLQ6ZTU2 488 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 NLRX1Q86UT6 975 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 ZNF354CQ86Y25 554 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 EFCAB13Q8IY85 973 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 GBP7Q8N8V2 638 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-203ENST00000409050 AK8Q96MA6 479 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 CTTNBP2NLQ9P2B4 639 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 JRKLQ9Y4A0 524 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 ARHGEF37A1IGU5 675 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 ATF7P17544 494 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-203ENST00000409050 EIF3BP55884 814 aaKnown RBP6.73□□□□□ -1.33
SCN1A-203ENST00000409050 TNNI3KQ59H18 835 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 CCDC25Q86WR0 208 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 FBXO41Q8TF61 875 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 MYCBPQ99417 103 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-203ENST00000409050 FGFR1OP2Q9NVK5 253 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 DAAM1Q9Y4D1 1078 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 FPGT-TNNI3KV9GXZ4 949 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 SBNO2Q9Y2G9 1366 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 RIOK3O14730 519 aaKnown RBP6.73□□□□□ -1.33
SCN1A-203ENST00000409050 TTI1O43156 1089 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 GTPBP6O43824 516 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-203ENST00000409050 GPTP24298 496 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 STX2P32856 288 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 BIRC3Q13489 604 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 DZIP3Q86Y13 1208 aaKnown RBP6.73□□□□□ -1.33
SCN1A-203ENST00000409050 DIS3L2Q8IYB7 885 aaKnown RBP6.73□□□□□ -1.33
SCN1A-203ENST00000409050 RUBCNQ92622 972 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 CDKL2Q92772 493 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 CCDC124Q96CT7 223 aaKnown RBP6.73□□□□□ -1.33
SCN1A-203ENST00000409050 JPH2Q9BR39 696 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-203ENST00000409050 TMX1Q9H3N1 280 aa6.73□□□□□ -1.33
SCN1A-203ENST00000409050 RPAP1Q9BWH6 1393 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-203ENST00000409050 SEMA3EO15041 775 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 LONP1P36776 959 aaKnown RBP6.72□□□□□ -1.33
SCN1A-203ENST00000409050 ARHGEF2Q92974 986 aaKnown RBP6.72□□□□□ -1.33
SCN1A-203ENST00000409050 EFHD1Q9BUP0 239 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 CARD6Q9BX69 1037 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 IFIH1Q9BYX4 1025 aaKnown RBP6.72□□□□□ -1.33
SCN1A-203ENST00000409050 TBX22Q9Y458 520 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 NFE2L3Q9Y4A8 694 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 SH3TC1Q8TE82 1336 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 134.3 ms