RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 SPATA5Q8NB90 893 aa23.84■■□□□ 1.41
CTCF-202ENST00000401394 AKAP11Q9UKA4 1901 aa23.84■■□□□ 1.41
CTCF-202ENST00000401394 TRPM3Q9HCF6 1732 aaPredicted RBP23.83■■□□□ 1.41
CTCF-202ENST00000401394 ATF3P18847 181 aa23.83■■□□□ 1.41
CTCF-202ENST00000401394 CUL4BQ13620 913 aa23.83■■□□□ 1.41
CTCF-202ENST00000401394 TRIM22Q8IYM9 498 aa23.83■■□□□ 1.41
CTCF-202ENST00000401394 V9GY48 417 aaPredicted RBP23.83■■□□□ 1.41
CTCF-202ENST00000401394 PPP1R3GB7ZBB8 358 aa23.83■■□□□ 1.41
CTCF-202ENST00000401394 MFAP3LO75121 409 aa23.83■■□□□ 1.41
CTCF-202ENST00000401394 MRPS25P82663 173 aaKnown RBP23.83■■□□□ 1.41
CTCF-202ENST00000401394 KIF6Q6ZMV9 814 aa23.83■■□□□ 1.41
CTCF-202ENST00000401394 FANCBQ8NB91 859 aa23.83■■□□□ 1.41
CTCF-202ENST00000401394 RIN2Q8WYP3 895 aaPredicted RBP23.83■■□□□ 1.41
CTCF-202ENST00000401394 WDR19Q8NEZ3 1342 aa23.83■■□□□ 1.41
CTCF-202ENST00000401394 KIF5CO60282 957 aa23.82■■□□□ 1.4
CTCF-202ENST00000401394 TMEM94Q12767 1356 aa23.82■■□□□ 1.4
CTCF-202ENST00000401394 GSPT2Q8IYD1 628 aaKnown RBP23.82■■□□□ 1.4
CTCF-202ENST00000401394 ZNF654Q8IZM8 581 aa23.82■■□□□ 1.4
CTCF-202ENST00000401394 CDC23Q9UJX2 597 aa23.82■■□□□ 1.4
CTCF-202ENST00000401394 MAP2K7O14733 419 aa23.82■■□□□ 1.4
CTCF-202ENST00000401394 RILPL1Q5EBL4 403 aa23.82■■□□□ 1.4
CTCF-202ENST00000401394 PLIN2Q99541 437 aa23.82■■□□□ 1.4
CTCF-202ENST00000401394 MTRQ99707 1265 aa23.82■■□□□ 1.4
CTCF-202ENST00000401394 TPM1P09493 284 aa23.82■■□□□ 1.4
CTCF-202ENST00000401394 LIFRP42702 1097 aa23.82■■□□□ 1.4
CTCF-202ENST00000401394 ECM29Q5VYK3 1845 aa23.82■■□□□ 1.4
CTCF-202ENST00000401394 LRRIQ3A6PVS8 624 aaPredicted RBP23.81■■□□□ 1.4
CTCF-202ENST00000401394 JAKMIP3Q5VZ66 844 aa23.81■■□□□ 1.4
CTCF-202ENST00000401394 CCDC102AQ96A19 550 aa23.81■■□□□ 1.4
CTCF-202ENST00000401394 GUCA1BQ9UMX6 200 aa23.81■■□□□ 1.4
CTCF-202ENST00000401394 TRIM49BA6NDI0 452 aa23.81■■□□□ 1.4
CTCF-202ENST00000401394 NMT2O60551 498 aa23.81■■□□□ 1.4
CTCF-202ENST00000401394 TXLNBQ8N3L3 684 aa23.81■■□□□ 1.4
CTCF-202ENST00000401394 PIGBQ92521 554 aa23.81■■□□□ 1.4
CTCF-202ENST00000401394 HOOK1Q9UJC3 728 aaKnown RBP23.81■■□□□ 1.4
CTCF-202ENST00000401394 SPATA31A3Q5VYP0 1347 aa23.8■■□□□ 1.4
CTCF-202ENST00000401394 A0A0G2JS52 829 aa23.8■■□□□ 1.4
CTCF-202ENST00000401394 CCDC151A5D8V7 595 aa23.8■■□□□ 1.4
CTCF-202ENST00000401394 PES1O00541 588 aaKnown RBP23.8■■□□□ 1.4
CTCF-202ENST00000401394 PBX1P40424 430 aa23.8■■□□□ 1.4
CTCF-202ENST00000401394 KRT31Q15323 416 aa23.8■■□□□ 1.4
CTCF-202ENST00000401394 SPATA1Q5VX52 437 aa23.8■■□□□ 1.4
CTCF-202ENST00000401394 CERS3Q8IU89 383 aa23.8■■□□□ 1.4
CTCF-202ENST00000401394 SPATA20Q8TB22 786 aa23.8■■□□□ 1.4
CTCF-202ENST00000401394 SLC4A9Q96Q91 983 aa23.8■■□□□ 1.4
CTCF-202ENST00000401394 GDAQ9Y2T3 454 aa23.8■■□□□ 1.4
CTCF-202ENST00000401394 PKN1Q16512 942 aa23.8■■□□□ 1.4
CTCF-202ENST00000401394 PCDH11XQ9BZA7 1347 aa23.8■■□□□ 1.4
CTCF-202ENST00000401394 PCDH11YQ9BZA8 1340 aa23.8■■□□□ 1.4
CTCF-202ENST00000401394 N4BP3O15049 544 aa23.79■■□□□ 1.4
CTCF-202ENST00000401394 ARHGAP25P42331 645 aa23.79■■□□□ 1.4
CTCF-202ENST00000401394 CAPZA3Q96KX2 299 aa23.79■■□□□ 1.4
CTCF-202ENST00000401394 NUP88Q99567 741 aaPredicted RBP23.79■■□□□ 1.4
CTCF-202ENST00000401394 RABEP2Q9H5N1 569 aa23.79■■□□□ 1.4
CTCF-202ENST00000401394 ABCF2Q9UG63 623 aa23.79■■□□□ 1.4
CTCF-202ENST00000401394 ZBTB1Q9Y2K1 713 aa23.79■■□□□ 1.4
CTCF-202ENST00000401394 KCPQ6ZWJ8 1503 aa23.79■■□□□ 1.4
CTCF-202ENST00000401394 GOLGA6L9A6NEM1 432 aa23.79■■□□□ 1.4
CTCF-202ENST00000401394 DHX8Q14562 1220 aaKnown RBP23.79■■□□□ 1.4
CTCF-202ENST00000401394 FOXP1Q9H334 677 aaPredicted RBP23.79■■□□□ 1.4
CTCF-202ENST00000401394 RRAGBQ5VZM2 374 aa23.79■■□□□ 1.4
CTCF-202ENST00000401394 PANX2Q96RD6 677 aa23.79■■□□□ 1.4
CTCF-202ENST00000401394 L1RE1Q9UN81 338 aa23.79■■□□□ 1.4
CTCF-202ENST00000401394 NUP188Q5SRE5 1749 aa23.78■■□□□ 1.4
CTCF-202ENST00000401394 XDHP47989 1333 aa23.78■■□□□ 1.4
CTCF-202ENST00000401394 MYO1CO00159 1063 aa23.78■■□□□ 1.4
CTCF-202ENST00000401394 TMOD3Q9NYL9 352 aa23.78■■□□□ 1.4
CTCF-202ENST00000401394 PKD1L3Q7Z443 1732 aa23.78■■□□□ 1.4
CTCF-202ENST00000401394 GOLGB1Q14789 3259 aaKnown RBP23.78■■□□□ 1.4
CTCF-202ENST00000401394 TRIM75PA6NK02 468 aa23.78■■□□□ 1.4
CTCF-202ENST00000401394 NKRFO15226 690 aaKnown RBP eCLIP23.78■■□□□ 1.4
CTCF-202ENST00000401394 DEXIO95424 95 aa23.78■■□□□ 1.4
CTCF-202ENST00000401394 TTF1Q15361 905 aaPredicted RBP23.78■■□□□ 1.4
CTCF-202ENST00000401394 TNKSO95271 1327 aa23.77■■□□□ 1.4
CTCF-202ENST00000401394 CTAGE9A4FU28 777 aa23.77■■□□□ 1.4
CTCF-202ENST00000401394 IL17AQ16552 155 aa23.77■■□□□ 1.4
CTCF-202ENST00000401394 CDKAL1Q5VV42 579 aa23.77■■□□□ 1.4
CTCF-202ENST00000401394 GIGYF2Q6Y7W6 1299 aaKnown RBP23.77■■□□□ 1.4
CTCF-202ENST00000401394 RASGRP2Q7LDG7 609 aa23.77■■□□□ 1.4
CTCF-202ENST00000401394 REXO2Q9Y3B8 237 aaKnown RBP23.77■■□□□ 1.4
CTCF-202ENST00000401394 AKAP17AQ02040 695 aaKnown RBP23.77■■□□□ 1.4
CTCF-202ENST00000401394 PTGDRQ13258 359 aa23.77■■□□□ 1.4
CTCF-202ENST00000401394 FKBP15Q5T1M5 1219 aa23.77■■□□□ 1.4
CTCF-202ENST00000401394 ERVV-2B6SEH9 535 aa23.76■■□□□ 1.39
CTCF-202ENST00000401394 CASP8Q14790 479 aa23.76■■□□□ 1.39
CTCF-202ENST00000401394 DACH1Q9UI36 760 aa23.76■■□□□ 1.39
CTCF-202ENST00000401394 KIF1AQ12756 1690 aa23.76■■□□□ 1.39
CTCF-202ENST00000401394 DDX60Q8IY21 1712 aaKnown RBP23.76■■□□□ 1.39
CTCF-202ENST00000401394 ERCC5P28715 1186 aaPredicted RBP23.76■■□□□ 1.39
CTCF-202ENST00000401394 MCM7P33993 719 aa23.76■■□□□ 1.39
CTCF-202ENST00000401394 UBAC1Q9BSL1 405 aa23.76■■□□□ 1.39
CTCF-202ENST00000401394 ABHD10Q9NUJ1 306 aa23.76■■□□□ 1.39
CTCF-202ENST00000401394 ATP8B1O43520 1251 aa23.75■■□□□ 1.39
CTCF-202ENST00000401394 ARID4AP29374 1257 aaPredicted RBP23.75■■□□□ 1.39
CTCF-202ENST00000401394 KRT9P35527 623 aa23.75■■□□□ 1.39
CTCF-202ENST00000401394 PMS1P54277 932 aaKnown RBP23.75■■□□□ 1.39
CTCF-202ENST00000401394 DYNLL1P63167 89 aaKnown RBP23.75■■□□□ 1.39
CTCF-202ENST00000401394 MAP3K12Q12852 859 aa23.75■■□□□ 1.39
CTCF-202ENST00000401394 LRP2BPQ9P2M1 347 aa23.75■■□□□ 1.39
CTCF-202ENST00000401394 RSPH14Q9UHP6 348 aa23.75■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms