RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 AKR1B1P15121 316 aa28.32■■■□□ 2.12
SHMT1-204ENST00000395682 TICAM2Q86XR7 235 aa28.32■■■□□ 2.12
SHMT1-204ENST00000395682 CCDC17Q96LX7 622 aa28.32■■■□□ 2.12
SHMT1-204ENST00000395682 NACAP1Q9BZK3 213 aa28.32■■■□□ 2.12
SHMT1-204ENST00000395682 ASCC2Q9H1I8 757 aaPredicted RBP28.32■■■□□ 2.12
SHMT1-204ENST00000395682 ZYXQ15942 572 aaKnown RBP28.31■■■□□ 2.12
SHMT1-204ENST00000395682 CCDC129Q6ZRS4 1044 aa28.31■■■□□ 2.12
SHMT1-204ENST00000395682 TMEM179Q6ZVK1 233 aa28.31■■■□□ 2.12
SHMT1-204ENST00000395682 HELLSQ9NRZ9 838 aa28.31■■■□□ 2.12
SHMT1-204ENST00000395682 HOXA7P31268 230 aaPredicted RBP28.3■■■□□ 2.12
SHMT1-204ENST00000395682 PSMC4P43686 418 aa28.3■■■□□ 2.12
SHMT1-204ENST00000395682 USP14P54578 494 aa28.3■■■□□ 2.12
SHMT1-204ENST00000395682 STK11IPQ8N1F8 1099 aa28.3■■■□□ 2.12
SHMT1-204ENST00000395682 KIAA1683Q9H0B3 1180 aa28.3■■■□□ 2.12
SHMT1-204ENST00000395682 LOC285556D6RIA3 1793 aa28.29■■■□□ 2.12
SHMT1-204ENST00000395682 CTGFP29279 349 aa28.29■■■□□ 2.12
SHMT1-204ENST00000395682 IRX3P78415 501 aaPredicted RBP28.29■■■□□ 2.12
SHMT1-204ENST00000395682 ANKRD13CQ8N6S4 541 aa28.29■■■□□ 2.12
SHMT1-204ENST00000395682 FMNL1O95466 1100 aaPredicted RBP28.28■■■□□ 2.12
SHMT1-204ENST00000395682 GNRH1P01148 92 aa28.28■■■□□ 2.12
SHMT1-204ENST00000395682 TRIM47Q96LD4 638 aa28.28■■■□□ 2.12
SHMT1-204ENST00000395682 C12orf42Q96LP6 360 aa28.28■■■□□ 2.12
SHMT1-204ENST00000395682 FAM227BQ96M60 508 aa28.28■■■□□ 2.12
SHMT1-204ENST00000395682 PDE4AP27815 886 aa28.27■■■□□ 2.12
SHMT1-204ENST00000395682 GCLCP48506 637 aaPredicted RBP28.27■■■□□ 2.12
SHMT1-204ENST00000395682 MCMDC2Q4G0Z9 681 aa28.27■■■□□ 2.12
SHMT1-204ENST00000395682 P2RX7Q99572 595 aaKnown RBP28.27■■■□□ 2.12
SHMT1-204ENST00000395682 NAPBQ9H115 298 aa28.27■■■□□ 2.12
SHMT1-204ENST00000395682 MKNK2Q9HBH9 465 aa28.27■■■□□ 2.12
SHMT1-204ENST00000395682 A0A1W2PRG0 241 aa28.26■■■□□ 2.11
SHMT1-204ENST00000395682 A0A0D9SFI3 127 aa28.25■■■□□ 2.11
SHMT1-204ENST00000395682 FCGRTP55899 365 aa28.25■■■□□ 2.11
SHMT1-204ENST00000395682 NMIQ13287 307 aaPredicted RBP28.25■■■□□ 2.11
SHMT1-204ENST00000395682 SIAH1Q8IUQ4 282 aa28.25■■■□□ 2.11
SHMT1-204ENST00000395682 USP17L15C9J2P7 530 aa28.24■■■□□ 2.11
SHMT1-204ENST00000395682 USP17L13C9JLJ4 530 aa28.24■■■□□ 2.11
SHMT1-204ENST00000395682 USP17L11C9JVI0 530 aa28.24■■■□□ 2.11
SHMT1-204ENST00000395682 USP17L18D6R9N7 530 aa28.24■■■□□ 2.11
SHMT1-204ENST00000395682 USP17L22D6RA61 530 aa28.24■■■□□ 2.11
SHMT1-204ENST00000395682 USP17L17D6RBQ6 530 aa28.24■■■□□ 2.11
SHMT1-204ENST00000395682 USP17L19D6RCP7 530 aa28.24■■■□□ 2.11
SHMT1-204ENST00000395682 USP17L20D6RJB6 530 aa28.24■■■□□ 2.11
SHMT1-204ENST00000395682 SDSP20132 328 aa28.24■■■□□ 2.11
SHMT1-204ENST00000395682 HOXD10P28358 340 aa28.24■■■□□ 2.11
SHMT1-204ENST00000395682 ICA1Q05084 483 aa28.24■■■□□ 2.11
SHMT1-204ENST00000395682 USP17L24Q0WX57 530 aa28.24■■■□□ 2.11
SHMT1-204ENST00000395682 FAM110CQ1W6H9 321 aa28.24■■■□□ 2.11
SHMT1-204ENST00000395682 CLEC10AQ8IUN9 316 aa28.24■■■□□ 2.11
SHMT1-204ENST00000395682 ARHGEF10LQ9HCE6 1279 aa28.24■■■□□ 2.11
SHMT1-204ENST00000395682 PTCH2Q9Y6C5 1203 aa28.24■■■□□ 2.11
SHMT1-204ENST00000395682 ROBO3Q96MS0 1386 aa28.24■■■□□ 2.11
SHMT1-204ENST00000395682 FOXP2O15409 715 aa28.23■■■□□ 2.11
SHMT1-204ENST00000395682 VCAM1P19320 739 aa28.23■■■□□ 2.11
SHMT1-204ENST00000395682 RASA1P20936 1047 aa28.23■■■□□ 2.11
SHMT1-204ENST00000395682 PRMT2P55345 433 aa28.23■■■□□ 2.11
SHMT1-204ENST00000395682 HERVK_113P62684 666 aa28.23■■■□□ 2.11
SHMT1-204ENST00000395682 KANSL2Q9H9L4 492 aa28.23■■■□□ 2.11
SHMT1-204ENST00000395682 ZNF287Q9HBT7 754 aa28.23■■■□□ 2.11
SHMT1-204ENST00000395682 SRRDQ9UH36 339 aa28.23■■■□□ 2.11
SHMT1-204ENST00000395682 ZSWIM8A7E2V4 1837 aa28.22■■■□□ 2.11
SHMT1-204ENST00000395682 MYH8P13535 1937 aa28.22■■■□□ 2.11
SHMT1-204ENST00000395682 VPS53Q5VIR6 699 aa28.22■■■□□ 2.11
SHMT1-204ENST00000395682 SLC3A2P08195 630 aaKnown RBP28.21■■■□□ 2.11
SHMT1-204ENST00000395682 PPARAQ07869 468 aa28.21■■■□□ 2.11
SHMT1-204ENST00000395682 CATSPERGQ6ZRH7 1159 aa28.21■■■□□ 2.11
SHMT1-204ENST00000395682 ZNF444Q8N0Y2 327 aaPredicted RBP28.21■■■□□ 2.11
SHMT1-204ENST00000395682 PRDM1O75626 825 aa28.2■■■□□ 2.1
SHMT1-204ENST00000395682 EEF2P13639 858 aaKnown RBP28.2■■■□□ 2.1
SHMT1-204ENST00000395682 ATP2B2Q01814 1243 aa28.2■■■□□ 2.1
SHMT1-204ENST00000395682 GNL3Q9BVP2 549 aaKnown RBP eCLIP28.2■■■□□ 2.1
SHMT1-204ENST00000395682 RPAP3Q9H6T3 665 aaPredicted RBP28.2■■■□□ 2.1
SHMT1-204ENST00000395682 SH2D4AQ9H788 454 aa28.2■■■□□ 2.1
SHMT1-204ENST00000395682 TMX2Q9Y320 296 aa28.2■■■□□ 2.1
SHMT1-204ENST00000395682 PDE4BQ07343 736 aa28.19■■■□□ 2.1
SHMT1-204ENST00000395682 ALX1Q15699 326 aa28.19■■■□□ 2.1
SHMT1-204ENST00000395682 ZNF589Q86UQ0 364 aaPredicted RBP28.19■■■□□ 2.1
SHMT1-204ENST00000395682 RBPJLQ9UBG7 517 aa28.19■■■□□ 2.1
SHMT1-204ENST00000395682 MORF4L1Q9UBU8 362 aa28.19■■■□□ 2.1
SHMT1-204ENST00000395682 MYPNQ86TC9 1320 aa28.18■■■□□ 2.1
SHMT1-204ENST00000395682 TNPO2O14787 897 aaKnown RBP28.18■■■□□ 2.1
SHMT1-204ENST00000395682 PEX10O60683 326 aa28.18■■■□□ 2.1
SHMT1-204ENST00000395682 SOX10P56693 466 aa28.18■■■□□ 2.1
SHMT1-204ENST00000395682 SLC9C1Q4G0N8 1177 aa28.18■■■□□ 2.1
SHMT1-204ENST00000395682 KIAA1755Q5JYT7 1200 aa28.18■■■□□ 2.1
SHMT1-204ENST00000395682 GPRC5AQ8NFJ5 357 aa28.18■■■□□ 2.1
SHMT1-204ENST00000395682 GTF3C2Q8WUA4 911 aaPredicted RBP28.18■■■□□ 2.1
SHMT1-204ENST00000395682 DIAPH3Q9NSV4 1193 aa28.18■■■□□ 2.1
SHMT1-204ENST00000395682 HIP1O00291 1037 aa28.17■■■□□ 2.1
SHMT1-204ENST00000395682 HSPD1P10809 573 aaKnown RBP28.17■■■□□ 2.1
SHMT1-204ENST00000395682 TTC22Q5TAA0 569 aa28.17■■■□□ 2.1
SHMT1-204ENST00000395682 CWC27Q6UX04 472 aaKnown RBP28.17■■■□□ 2.1
SHMT1-204ENST00000395682 NBPF11Q86T75 865 aa28.17■■■□□ 2.1
SHMT1-204ENST00000395682 RAET1EQ8TD07 263 aa28.17■■■□□ 2.1
SHMT1-204ENST00000395682 ARMC5Q96C12 935 aa28.17■■■□□ 2.1
SHMT1-204ENST00000395682 VCPKMTQ9H867 229 aa28.17■■■□□ 2.1
SHMT1-204ENST00000395682 TXNRD2Q9NNW7 524 aa28.17■■■□□ 2.1
SHMT1-204ENST00000395682 HTTP42858 3142 aa28.17■■■□□ 2.1
SHMT1-204ENST00000395682 CCDC171Q6TFL3 1326 aa28.17■■■□□ 2.1
SHMT1-204ENST00000395682 FGAP02671 866 aa28.16■■■□□ 2.1
SHMT1-204ENST00000395682 MFAP1P55081 439 aaKnown RBP28.16■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms