RNA–Protein interactions for RNA: ENST00000393546.8

PDLIM7-204, Transcript of PDZ and LIM domain 7, humanhuman

TSL 3

Gene PDLIM7, Length 671 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-204ENST00000393546 RAD50Q92878 1312 aa22.59■■□□□ 1.21
PDLIM7-204ENST00000393546 NOM1Q5C9Z4 860 aaKnown RBP22.59■■□□□ 1.21
PDLIM7-204ENST00000393546 FEZ1Q99689 392 aa22.59■■□□□ 1.21
PDLIM7-204ENST00000393546 PTPRFP10586 1907 aa22.59■■□□□ 1.21
PDLIM7-204ENST00000393546 GPR25O00155 361 aa22.58■■□□□ 1.21
PDLIM7-204ENST00000393546 RASA1P20936 1047 aa22.58■■□□□ 1.21
PDLIM7-204ENST00000393546 CTDSPL2Q05D32 466 aa22.58■■□□□ 1.21
PDLIM7-204ENST00000393546 USP17L2Q6R6M4 530 aa22.58■■□□□ 1.21
PDLIM7-204ENST00000393546 DSCC1Q9BVC3 393 aa22.58■■□□□ 1.21
PDLIM7-204ENST00000393546 AGTPBP1Q9UPW5 1226 aa22.58■■□□□ 1.21
PDLIM7-204ENST00000393546 SLC45A1Q9Y2W3 748 aa22.58■■□□□ 1.21
PDLIM7-204ENST00000393546 PRDM1O75626 825 aa22.57■■□□□ 1.2
PDLIM7-204ENST00000393546 USP14P54578 494 aa22.57■■□□□ 1.2
PDLIM7-204ENST00000393546 PABPC4Q13310 644 aaKnown RBP eCLIP22.57■■□□□ 1.2
PDLIM7-204ENST00000393546 ACER1Q8TDN7 264 aa22.57■■□□□ 1.2
PDLIM7-204ENST00000393546 KANSL2Q9H9L4 492 aa22.57■■□□□ 1.2
PDLIM7-204ENST00000393546 ARHGEF10LQ9HCE6 1279 aa22.57■■□□□ 1.2
PDLIM7-204ENST00000393546 PARK7Q99497 189 aaKnown RBP22.56■■□□□ 1.2
PDLIM7-204ENST00000393546 KIAA1683Q9H0B3 1180 aa22.56■■□□□ 1.2
PDLIM7-204ENST00000393546 CTNNA3Q9UI47 895 aa22.56■■□□□ 1.2
PDLIM7-204ENST00000393546 CASP8AP2Q9UKL3 1982 aa22.56■■□□□ 1.2
PDLIM7-204ENST00000393546 ZNF213O14771 459 aa22.55■■□□□ 1.2
PDLIM7-204ENST00000393546 SGSM2O43147 1006 aa22.55■■□□□ 1.2
PDLIM7-204ENST00000393546 TLR2O60603 784 aa22.55■■□□□ 1.2
PDLIM7-204ENST00000393546 FKTNO75072 461 aa22.55■■□□□ 1.2
PDLIM7-204ENST00000393546 ICA1Q05084 483 aa22.55■■□□□ 1.2
PDLIM7-204ENST00000393546 DGKZQ13574 1117 aa22.55■■□□□ 1.2
PDLIM7-204ENST00000393546 ZYXQ15942 572 aaKnown RBP22.55■■□□□ 1.2
PDLIM7-204ENST00000393546 TREML2Q5T2D2 321 aa22.55■■□□□ 1.2
PDLIM7-204ENST00000393546 ZNF296Q8WUU4 475 aaPredicted RBP22.55■■□□□ 1.2
PDLIM7-204ENST00000393546 IL25Q9H293 177 aa22.55■■□□□ 1.2
PDLIM7-204ENST00000393546 EMILIN3Q9NT22 766 aa22.55■■□□□ 1.2
PDLIM7-204ENST00000393546 PNMA3Q9UL41 463 aa22.55■■□□□ 1.2
PDLIM7-204ENST00000393546 OSBPP22059 807 aa22.54■■□□□ 1.2
PDLIM7-204ENST00000393546 HAND2P61296 217 aa22.54■■□□□ 1.2
PDLIM7-204ENST00000393546 ATP2B2Q01814 1243 aa22.54■■□□□ 1.2
PDLIM7-204ENST00000393546 SH2D4AQ9H788 454 aa22.54■■□□□ 1.2
PDLIM7-204ENST00000393546 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.54■■□□□ 1.2
PDLIM7-204ENST00000393546 A0A1W2PRG0 241 aa22.53■■□□□ 1.2
PDLIM7-204ENST00000393546 TSPY3P0CV98 308 aa22.53■■□□□ 1.2
PDLIM7-204ENST00000393546 TSPY8P0CW00 308 aa22.53■■□□□ 1.2
PDLIM7-204ENST00000393546 TFAP4Q01664 338 aa22.53■■□□□ 1.2
PDLIM7-204ENST00000393546 COL13A1Q5TAT6 717 aaPredicted RBP22.53■■□□□ 1.2
PDLIM7-204ENST00000393546 SIAH1Q8IUQ4 282 aa22.53■■□□□ 1.2
PDLIM7-204ENST00000393546 C12orf42Q96LP6 360 aa22.53■■□□□ 1.2
PDLIM7-204ENST00000393546 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.53■■□□□ 1.2
PDLIM7-204ENST00000393546 INCENPQ9NQS7 918 aa22.53■■□□□ 1.2
PDLIM7-204ENST00000393546 ORC4O43929 436 aa22.52■■□□□ 1.2
PDLIM7-204ENST00000393546 FGRP09769 529 aa22.52■■□□□ 1.2
PDLIM7-204ENST00000393546 CYP2C8P10632 490 aa22.52■■□□□ 1.2
PDLIM7-204ENST00000393546 EEF2P13639 858 aaKnown RBP22.52■■□□□ 1.2
PDLIM7-204ENST00000393546 HOXA7P31268 230 aaPredicted RBP22.52■■□□□ 1.2
PDLIM7-204ENST00000393546 SP3Q02447 781 aa22.52■■□□□ 1.2
PDLIM7-204ENST00000393546 IMMTQ16891 758 aaKnown RBP22.52■■□□□ 1.2
PDLIM7-204ENST00000393546 FAM47AQ5JRC9 791 aa22.52■■□□□ 1.2
PDLIM7-204ENST00000393546 CASC1Q6TDU7 716 aa22.52■■□□□ 1.2
PDLIM7-204ENST00000393546 CLEC10AQ8IUN9 316 aa22.52■■□□□ 1.2
PDLIM7-204ENST00000393546 NEDD1Q8NHV4 660 aa22.52■■□□□ 1.2
PDLIM7-204ENST00000393546 RNF41Q9H4P4 317 aaPredicted RBP22.52■■□□□ 1.2
PDLIM7-204ENST00000393546 TOMM22Q9NS69 142 aa22.52■■□□□ 1.2
PDLIM7-204ENST00000393546 TMX2Q9Y320 296 aa22.52■■□□□ 1.2
PDLIM7-204ENST00000393546 LOC285556D6RIA3 1793 aa22.51■■□□□ 1.19
PDLIM7-204ENST00000393546 TSPY2A6NKD2 308 aa22.51■■□□□ 1.19
PDLIM7-204ENST00000393546 PCP11498 1178 aaKnown RBP22.51■■□□□ 1.19
PDLIM7-204ENST00000393546 AKNAD1Q5T1N1 836 aa22.51■■□□□ 1.19
PDLIM7-204ENST00000393546 C17orf99Q6UX52 265 aa22.51■■□□□ 1.19
PDLIM7-204ENST00000393546 MFSD6Q6ZSS7 791 aa22.51■■□□□ 1.19
PDLIM7-204ENST00000393546 KIAA1211Q6ZU35 1233 aa22.51■■□□□ 1.19
PDLIM7-204ENST00000393546 SMCR8Q8TEV9 937 aaPredicted RBP22.51■■□□□ 1.19
PDLIM7-204ENST00000393546 NYAP2Q9P242 653 aa22.51■■□□□ 1.19
PDLIM7-204ENST00000393546 IGKV6D-41A0A0C4DH26 115 aa22.5■■□□□ 1.19
PDLIM7-204ENST00000393546 RANBP6O60518 1105 aaKnown RBP22.5■■□□□ 1.19
PDLIM7-204ENST00000393546 IRX3P78415 501 aaPredicted RBP22.5■■□□□ 1.19
PDLIM7-204ENST00000393546 RRP12Q5JTH9 1297 aaKnown RBP22.5■■□□□ 1.19
PDLIM7-204ENST00000393546 STAG1Q8WVM7 1258 aa22.5■■□□□ 1.19
PDLIM7-204ENST00000393546 ESYT1Q9BSJ8 1104 aa22.5■■□□□ 1.19
PDLIM7-204ENST00000393546 ASCC2Q9H1I8 757 aaPredicted RBP22.5■■□□□ 1.19
PDLIM7-204ENST00000393546 CPA4Q9UI42 421 aa22.5■■□□□ 1.19
PDLIM7-204ENST00000393546 TACC3Q9Y6A5 838 aa22.5■■□□□ 1.19
PDLIM7-204ENST00000393546 USP17L15C9J2P7 530 aa22.49■■□□□ 1.19
PDLIM7-204ENST00000393546 USP17L13C9JLJ4 530 aa22.49■■□□□ 1.19
PDLIM7-204ENST00000393546 USP17L11C9JVI0 530 aa22.49■■□□□ 1.19
PDLIM7-204ENST00000393546 USP17L18D6R9N7 530 aa22.49■■□□□ 1.19
PDLIM7-204ENST00000393546 USP17L22D6RA61 530 aa22.49■■□□□ 1.19
PDLIM7-204ENST00000393546 USP17L17D6RBQ6 530 aa22.49■■□□□ 1.19
PDLIM7-204ENST00000393546 USP17L19D6RCP7 530 aa22.49■■□□□ 1.19
PDLIM7-204ENST00000393546 USP17L20D6RJB6 530 aa22.49■■□□□ 1.19
PDLIM7-204ENST00000393546 CDC45O75419 566 aa22.49■■□□□ 1.19
PDLIM7-204ENST00000393546 PTH1RQ03431 593 aa22.49■■□□□ 1.19
PDLIM7-204ENST00000393546 USP17L24Q0WX57 530 aa22.49■■□□□ 1.19
PDLIM7-204ENST00000393546 PPP4R3BQ5MIZ7 849 aa22.49■■□□□ 1.19
PDLIM7-204ENST00000393546 ERO1AQ96HE7 468 aa22.49■■□□□ 1.19
PDLIM7-204ENST00000393546 MTMR4Q9NYA4 1195 aa22.49■■□□□ 1.19
PDLIM7-204ENST00000393546 CLIP2Q9UDT6 1046 aa22.49■■□□□ 1.19
PDLIM7-204ENST00000393546 U3KPZ7 1027 aaPredicted RBP22.49■■□□□ 1.19
PDLIM7-204ENST00000393546 VCAM1P19320 739 aa22.48■■□□□ 1.19
PDLIM7-204ENST00000393546 LPAR1Q92633 364 aa22.48■■□□□ 1.19
PDLIM7-204ENST00000393546 CEP95Q96GE4 821 aa22.48■■□□□ 1.19
PDLIM7-204ENST00000393546 NBPF3Q9H094 633 aa22.48■■□□□ 1.19
PDLIM7-204ENST00000393546 VCPKMTQ9H867 229 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms