RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 DNERQ8NFT8 737 aa1.23□□□□□ -2.21
RNU6-540P-201ENST00000384622 ASAP3Q8TDY4 903 aa1.23□□□□□ -2.21
RNU6-540P-201ENST00000384622 NXPE3Q969Y0 559 aa1.23□□□□□ -2.21
RNU6-540P-201ENST00000384622 KANSL3Q9P2N6 904 aa1.23□□□□□ -2.21
RNU6-540P-201ENST00000384622 PMF1-BGLAPU3KQ54 211 aa1.23□□□□□ -2.21
RNU6-540P-201ENST00000384622 M0R2N6 131 aa1.22□□□□□ -2.21
RNU6-540P-201ENST00000384622 PLA2G1BP04054 148 aaKnown RBP1.22□□□□□ -2.21
RNU6-540P-201ENST00000384622 FGD1P98174 961 aa1.22□□□□□ -2.21
RNU6-540P-201ENST00000384622 KANK4Q5T7N3 995 aaPredicted RBP1.22□□□□□ -2.21
RNU6-540P-201ENST00000384622 CIR1Q86X95 450 aaPredicted RBP1.22□□□□□ -2.21
RNU6-540P-201ENST00000384622 LARP4BQ92615 738 aaKnown RBP1.22□□□□□ -2.21
RNU6-540P-201ENST00000384622 ISL2Q96A47 359 aa1.22□□□□□ -2.21
RNU6-540P-201ENST00000384622 WWC2-AS2Q96NR7 200 aa1.22□□□□□ -2.21
RNU6-540P-201ENST00000384622 VPS33BQ9H267 617 aa1.22□□□□□ -2.21
RNU6-540P-201ENST00000384622 TSHZ2Q9NRE2 1034 aa1.22□□□□□ -2.21
RNU6-540P-201ENST00000384622 SALL4Q9UJQ4 1053 aa1.22□□□□□ -2.21
RNU6-540P-201ENST00000384622 TRIM66O15016 1216 aa1.21□□□□□ -2.22
RNU6-540P-201ENST00000384622 IGFBP6P24592 240 aaPredicted RBP1.21□□□□□ -2.22
RNU6-540P-201ENST00000384622 SARSP49591 514 aaKnown RBP1.21□□□□□ -2.22
RNU6-540P-201ENST00000384622 DGCR2P98153 550 aa1.21□□□□□ -2.22
RNU6-540P-201ENST00000384622 PLEKHN1Q494U1 663 aaPredicted RBP1.21□□□□□ -2.22
RNU6-540P-201ENST00000384622 SFRP5Q5T4F7 317 aa1.21□□□□□ -2.22
RNU6-540P-201ENST00000384622 CCDC102BQ68D86 513 aa1.21□□□□□ -2.22
RNU6-540P-201ENST00000384622 BORAQ6PGQ7 559 aa1.21□□□□□ -2.22
RNU6-540P-201ENST00000384622 TTPALQ9BTX7 342 aa1.21□□□□□ -2.22
RNU6-540P-201ENST00000384622 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP1.21□□□□□ -2.22
RNU6-540P-201ENST00000384622 RIOX1Q9H6W3 641 aa1.21□□□□□ -2.22
RNU6-540P-201ENST00000384622 PPP4R1LQ9P1A2 415 aa1.21□□□□□ -2.22
RNU6-540P-201ENST00000384622 TPX2Q9ULW0 747 aaKnown RBP1.21□□□□□ -2.22
RNU6-540P-201ENST00000384622 FNDC3AQ9Y2H6 1198 aaKnown RBP1.21□□□□□ -2.22
RNU6-540P-201ENST00000384622 NDUFB9Q9Y6M9 179 aa1.21□□□□□ -2.22
RNU6-540P-201ENST00000384622 CAPN6Q9Y6Q1 641 aa1.21□□□□□ -2.22
RNU6-540P-201ENST00000384622 HMCN1Q96RW7 5635 aa1.2□□□□□ -2.22
RNU6-540P-201ENST00000384622 GPR42O15529 346 aa1.2□□□□□ -2.22
RNU6-540P-201ENST00000384622 LAMTOR5O43504 91 aa1.2□□□□□ -2.22
RNU6-540P-201ENST00000384622 NEFMP07197 916 aa1.2□□□□□ -2.22
RNU6-540P-201ENST00000384622 LIG1P18858 919 aa1.2□□□□□ -2.22
RNU6-540P-201ENST00000384622 ZNF76P36508 570 aa1.2□□□□□ -2.22
RNU6-540P-201ENST00000384622 FOXO4P98177 505 aa1.2□□□□□ -2.22
RNU6-540P-201ENST00000384622 DLX2Q07687 328 aaPredicted RBP1.2□□□□□ -2.22
RNU6-540P-201ENST00000384622 VAC14Q08AM6 782 aa1.2□□□□□ -2.22
RNU6-540P-201ENST00000384622 PRKD1Q15139 912 aaPredicted RBP1.2□□□□□ -2.22
RNU6-540P-201ENST00000384622 USP39Q53GS9 565 aaKnown RBP1.2□□□□□ -2.22
RNU6-540P-201ENST00000384622 BARGINQ6ZT62 677 aa1.2□□□□□ -2.22
RNU6-540P-201ENST00000384622 C22orf34Q6ZV56 151 aa1.2□□□□□ -2.22
RNU6-540P-201ENST00000384622 NLRX1Q86UT6 975 aa1.2□□□□□ -2.22
RNU6-540P-201ENST00000384622 FAM124AQ86V42 546 aa1.2□□□□□ -2.22
RNU6-540P-201ENST00000384622 ANKS4BQ8N8V4 417 aa1.2□□□□□ -2.22
RNU6-540P-201ENST00000384622 Q8N9P0 234 aaPredicted RBP1.2□□□□□ -2.22
RNU6-540P-201ENST00000384622 WDR89Q96FK6 387 aaPredicted RBP1.2□□□□□ -2.22
RNU6-540P-201ENST00000384622 PRRX2Q99811 253 aa1.2□□□□□ -2.22
RNU6-540P-201ENST00000384622 CRTAC1Q9NQ79 661 aa1.2□□□□□ -2.22
RNU6-540P-201ENST00000384622 KLHL14Q9P2G3 628 aa1.2□□□□□ -2.22
RNU6-540P-201ENST00000384622 RNF7Q9UBF6 113 aa1.2□□□□□ -2.22
RNU6-540P-201ENST00000384622 ZBTB32Q9Y2Y4 487 aaPredicted RBP1.2□□□□□ -2.22
RNU6-540P-201ENST00000384622 RBAK-RBAKDNI3L0D1 243 aa1.19□□□□□ -2.22
RNU6-540P-201ENST00000384622 LZTS3O60299 673 aaPredicted RBP1.19□□□□□ -2.22
RNU6-540P-201ENST00000384622 ZNF623O75123 536 aa1.19□□□□□ -2.22
RNU6-540P-201ENST00000384622 CBX7O95931 251 aa1.19□□□□□ -2.22
RNU6-540P-201ENST00000384622 MPOP05164 745 aa1.19□□□□□ -2.22
RNU6-540P-201ENST00000384622 ZFP36P26651 326 aaKnown RBP1.19□□□□□ -2.22
RNU6-540P-201ENST00000384622 HTRA3P83110 453 aa1.19□□□□□ -2.22
RNU6-540P-201ENST00000384622 EGR3Q06889 387 aa1.19□□□□□ -2.22
RNU6-540P-201ENST00000384622 TMEM62Q0P6H9 643 aa1.19□□□□□ -2.22
RNU6-540P-201ENST00000384622 SURF1Q15526 300 aa1.19□□□□□ -2.22
RNU6-540P-201ENST00000384622 USP43Q70EL4 1123 aa1.19□□□□□ -2.22
RNU6-540P-201ENST00000384622 ZNF627Q7L945 461 aa1.19□□□□□ -2.22
RNU6-540P-201ENST00000384622 PRIMA1Q86XR5 153 aa1.19□□□□□ -2.22
RNU6-540P-201ENST00000384622 DDX54Q8TDD1 881 aaKnown RBP1.19□□□□□ -2.22
RNU6-540P-201ENST00000384622 IGDCC4Q8TDY8 1250 aa1.19□□□□□ -2.22
RNU6-540P-201ENST00000384622 PIK3R5Q8WYR1 880 aa1.19□□□□□ -2.22
RNU6-540P-201ENST00000384622 SMG7Q92540 1137 aaKnown RBP1.19□□□□□ -2.22
RNU6-540P-201ENST00000384622 WBP1Q96G27 269 aa1.19□□□□□ -2.22
RNU6-540P-201ENST00000384622 OSMRQ99650 979 aa1.19□□□□□ -2.22
RNU6-540P-201ENST00000384622 QTRT2Q9H974 415 aaKnown RBP1.19□□□□□ -2.22
RNU6-540P-201ENST00000384622 SLC2A4RGQ9NR83 387 aa1.19□□□□□ -2.22
RNU6-540P-201ENST00000384622 TESQ9UGI8 421 aaKnown RBP1.19□□□□□ -2.22
RNU6-540P-201ENST00000384622 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP1.19□□□□□ -2.22
RNU6-540P-201ENST00000384622 WASH4PA8MWX3 477 aa1.18□□□□□ -2.22
RNU6-540P-201ENST00000384622 PATE3B3GLJ2 98 aa1.18□□□□□ -2.22
RNU6-540P-201ENST00000384622 ZBTB7BO15156 539 aaPredicted RBP1.18□□□□□ -2.22
RNU6-540P-201ENST00000384622 MAKP20794 623 aa1.18□□□□□ -2.22
RNU6-540P-201ENST00000384622 RFX1P22670 979 aa1.18□□□□□ -2.22
RNU6-540P-201ENST00000384622 FSTL1Q12841 308 aa1.18□□□□□ -2.22
RNU6-540P-201ENST00000384622 DUSP4Q13115 394 aa1.18□□□□□ -2.22
RNU6-540P-201ENST00000384622 TARBP2Q15633 366 aaKnown RBP1.18□□□□□ -2.22
RNU6-540P-201ENST00000384622 RGL3Q3MIN7 710 aa1.18□□□□□ -2.22
RNU6-540P-201ENST00000384622 SH3D19Q5HYK7 790 aa1.18□□□□□ -2.22
RNU6-540P-201ENST00000384622 ADAMTS17Q8TE56 1095 aa1.18□□□□□ -2.22
RNU6-540P-201ENST00000384622 TRIM56Q9BRZ2 755 aaKnown RBP1.18□□□□□ -2.22
RNU6-540P-201ENST00000384622 MMRN2Q9H8L6 949 aa1.18□□□□□ -2.22
RNU6-540P-201ENST00000384622 NTMQ9P121 344 aa1.18□□□□□ -2.22
RNU6-540P-201ENST00000384622 A6NJR5 290 aa1.17□□□□□ -2.22
RNU6-540P-201ENST00000384622 ZFPL1O95159 310 aa1.17□□□□□ -2.22
RNU6-540P-201ENST00000384622 CES1P23141 567 aa1.17□□□□□ -2.22
RNU6-540P-201ENST00000384622 TPP2P29144 1249 aaPredicted RBP1.17□□□□□ -2.22
RNU6-540P-201ENST00000384622 PCDH1Q08174 1060 aa1.17□□□□□ -2.22
RNU6-540P-201ENST00000384622 NCOA4Q13772 614 aa1.17□□□□□ -2.22
RNU6-540P-201ENST00000384622 RAB3GAP1Q15042 981 aa1.17□□□□□ -2.22
RNU6-540P-201ENST00000384622 ZNF423Q2M1K9 1284 aa1.17□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms