RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 FBXL16Q8N461 479 aa16.63■□□□□ 0.25
HMGA1-203ENST00000374116 MYRIPQ8NFW9 859 aa16.63■□□□□ 0.25
HMGA1-203ENST00000374116 ATP8A2Q9NTI2 1148 aa16.63■□□□□ 0.25
HMGA1-203ENST00000374116 MINDY4BA8MYZ0 360 aa16.62■□□□□ 0.25
HMGA1-203ENST00000374116 E7EWF7 191 aa16.62■□□□□ 0.25
HMGA1-203ENST00000374116 Q6ZUG5 572 aa16.62■□□□□ 0.25
HMGA1-203ENST00000374116 GTF3C6Q969F1 213 aa16.62■□□□□ 0.25
HMGA1-203ENST00000374116 DYNLL2Q96FJ2 89 aa16.62■□□□□ 0.25
HMGA1-203ENST00000374116 PRIMPOLQ96LW4 560 aa16.62■□□□□ 0.25
HMGA1-203ENST00000374116 CTNNA3Q9UI47 895 aa16.62■□□□□ 0.25
HMGA1-203ENST00000374116 SIPA1L1O43166 1804 aa16.62■□□□□ 0.25
HMGA1-203ENST00000374116 LETM1O95202 739 aaPredicted RBP16.61■□□□□ 0.25
HMGA1-203ENST00000374116 FGAP02671 866 aa16.61■□□□□ 0.25
HMGA1-203ENST00000374116 SLC44A5Q8NCS7 719 aa16.61■□□□□ 0.25
HMGA1-203ENST00000374116 PPP2R3BQ9Y5P8 575 aa16.61■□□□□ 0.25
HMGA1-203ENST00000374116 TRPM7Q96QT4 1865 aa16.61■□□□□ 0.25
HMGA1-203ENST00000374116 DDX60LQ5H9U9 1706 aaKnown RBP16.61■□□□□ 0.25
HMGA1-203ENST00000374116 UBE2Q2LH0YL09 131 aa16.61■□□□□ 0.25
HMGA1-203ENST00000374116 GNAT2P19087 354 aa16.61■□□□□ 0.25
HMGA1-203ENST00000374116 HAND2P61296 217 aa16.61■□□□□ 0.25
HMGA1-203ENST00000374116 CCDC183Q5T5S1 534 aa16.61■□□□□ 0.25
HMGA1-203ENST00000374116 NAPBQ9H115 298 aa16.61■□□□□ 0.25
HMGA1-203ENST00000374116 TSPY26PQ9H489 355 aa16.61■□□□□ 0.25
HMGA1-203ENST00000374116 DNAJC18Q9H819 358 aa16.61■□□□□ 0.25
HMGA1-203ENST00000374116 INCENPQ9NQS7 918 aa16.61■□□□□ 0.25
HMGA1-203ENST00000374116 ANGEL1Q9UNK9 670 aaKnown RBP16.61■□□□□ 0.25
HMGA1-203ENST00000374116 FIBPO43427 364 aa16.6■□□□□ 0.25
HMGA1-203ENST00000374116 NPM3O75607 178 aaKnown RBP16.6■□□□□ 0.25
HMGA1-203ENST00000374116 DNM1Q05193 864 aaKnown RBP16.6■□□□□ 0.25
HMGA1-203ENST00000374116 SHROOM1Q2M3G4 852 aaPredicted RBP16.6■□□□□ 0.25
HMGA1-203ENST00000374116 SUPT20HL1Q3ZLR7 823 aa16.6■□□□□ 0.25
HMGA1-203ENST00000374116 GBA2Q9HCG7 927 aaPredicted RBP16.6■□□□□ 0.25
HMGA1-203ENST00000374116 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.6■□□□□ 0.25
HMGA1-203ENST00000374116 ATRNL1Q5VV63 1379 aa16.6■□□□□ 0.25
HMGA1-203ENST00000374116 PCNTO95613 3336 aa16.59■□□□□ 0.25
HMGA1-203ENST00000374116 USP2O75604 605 aaPredicted RBP16.59■□□□□ 0.25
HMGA1-203ENST00000374116 NF2P35240 595 aa16.59■□□□□ 0.25
HMGA1-203ENST00000374116 STK3Q13188 491 aa16.59■□□□□ 0.25
HMGA1-203ENST00000374116 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.59■□□□□ 0.25
HMGA1-203ENST00000374116 PI4KBQ9UBF8 816 aa16.59■□□□□ 0.25
HMGA1-203ENST00000374116 A0A0U1RQG5 324 aaPredicted RBP16.59■□□□□ 0.25
HMGA1-203ENST00000374116 EVCP57679 992 aa16.59■□□□□ 0.25
HMGA1-203ENST00000374116 HMGN5P82970 282 aaKnown RBP16.59■□□□□ 0.25
HMGA1-203ENST00000374116 CTDSPL2Q05D32 466 aa16.59■□□□□ 0.25
HMGA1-203ENST00000374116 RRP1BQ14684 758 aaKnown RBP16.59■□□□□ 0.25
HMGA1-203ENST00000374116 C12orf60Q5U649 245 aa16.59■□□□□ 0.25
HMGA1-203ENST00000374116 CRACR2BQ8N4Y2 399 aaPredicted RBP16.59■□□□□ 0.25
HMGA1-203ENST00000374116 ZKSCAN4Q969J2 545 aaPredicted RBP16.59■□□□□ 0.25
HMGA1-203ENST00000374116 LLPHQ9BRT6 129 aaKnown RBP16.59■□□□□ 0.25
HMGA1-203ENST00000374116 NACAP1Q9BZK3 213 aa16.59■□□□□ 0.25
HMGA1-203ENST00000374116 DHX36Q9H2U1 1008 aaKnown RBP16.59■□□□□ 0.25
HMGA1-203ENST00000374116 PFKFB2O60825 505 aa16.58■□□□□ 0.24
HMGA1-203ENST00000374116 HLA-DOAP06340 250 aa16.58■□□□□ 0.24
HMGA1-203ENST00000374116 INPP5BP32019 993 aa16.58■□□□□ 0.24
HMGA1-203ENST00000374116 KRT85P78386 507 aa16.58■□□□□ 0.24
HMGA1-203ENST00000374116 BRF1Q92994 677 aa16.58■□□□□ 0.24
HMGA1-203ENST00000374116 CHMP4CQ96CF2 233 aa16.58■□□□□ 0.24
HMGA1-203ENST00000374116 ABT1Q9ULW3 272 aaKnown RBP16.58■□□□□ 0.24
HMGA1-203ENST00000374116 CEP350Q5VT06 3117 aa16.58■□□□□ 0.24
HMGA1-203ENST00000374116 PPP1R12BO60237 982 aaPredicted RBP16.57■□□□□ 0.24
HMGA1-203ENST00000374116 PRDM1O75626 825 aa16.57■□□□□ 0.24
HMGA1-203ENST00000374116 IMMTQ16891 758 aaKnown RBP16.57■□□□□ 0.24
HMGA1-203ENST00000374116 TTC6Q86TZ1 520 aa16.57■□□□□ 0.24
HMGA1-203ENST00000374116 CLMNQ96JQ2 1002 aa16.57■□□□□ 0.24
HMGA1-203ENST00000374116 WRNIP1Q96S55 665 aa16.57■□□□□ 0.24
HMGA1-203ENST00000374116 SERPINB13Q9UIV8 391 aa16.57■□□□□ 0.24
HMGA1-203ENST00000374116 TACC3Q9Y6A5 838 aa16.57■□□□□ 0.24
HMGA1-203ENST00000374116 ELP1O95163 1332 aa16.57■□□□□ 0.24
HMGA1-203ENST00000374116 TMEM88BA6NKF7 163 aa16.56■□□□□ 0.24
HMGA1-203ENST00000374116 DTNBO60941 627 aa16.56■□□□□ 0.24
HMGA1-203ENST00000374116 APLP1P51693 650 aa16.56■□□□□ 0.24
HMGA1-203ENST00000374116 PPARAQ07869 468 aa16.56■□□□□ 0.24
HMGA1-203ENST00000374116 GRM1Q13255 1194 aa16.56■□□□□ 0.24
HMGA1-203ENST00000374116 C2orf69Q8N8R5 385 aa16.56■□□□□ 0.24
HMGA1-203ENST00000374116 LRRC2Q9BYS8 371 aa16.56■□□□□ 0.24
HMGA1-203ENST00000374116 ARPP21Q9UBL0 812 aaPredicted RBP16.56■□□□□ 0.24
HMGA1-203ENST00000374116 GDF11O95390 407 aa16.56■□□□□ 0.24
HMGA1-203ENST00000374116 JAG1P78504 1218 aa16.56■□□□□ 0.24
HMGA1-203ENST00000374116 ALX1Q15699 326 aa16.56■□□□□ 0.24
HMGA1-203ENST00000374116 GIMAP6Q6P9H5 292 aa16.56■□□□□ 0.24
HMGA1-203ENST00000374116 CCDC84Q86UT8 332 aaPredicted RBP16.56■□□□□ 0.24
HMGA1-203ENST00000374116 MB21D2Q8IYB1 491 aaPredicted RBP16.56■□□□□ 0.24
HMGA1-203ENST00000374116 FAM184AQ8NB25 1140 aa16.56■□□□□ 0.24
HMGA1-203ENST00000374116 SMARCC2Q8TAQ2 1214 aa16.56■□□□□ 0.24
HMGA1-203ENST00000374116 KLRG1Q96E93 195 aa16.56■□□□□ 0.24
HMGA1-203ENST00000374116 TRIM34Q9BYJ4 488 aa16.56■□□□□ 0.24
HMGA1-203ENST00000374116 OTOFQ9HC10 1997 aa16.56■□□□□ 0.24
HMGA1-203ENST00000374116 ZMYM6O95789 1325 aa16.55■□□□□ 0.24
HMGA1-203ENST00000374116 PHF20L1A8MW92 1017 aa16.55■□□□□ 0.24
HMGA1-203ENST00000374116 HUNKP57058 714 aa16.55■□□□□ 0.24
HMGA1-203ENST00000374116 SCRN1Q12765 414 aa16.55■□□□□ 0.24
HMGA1-203ENST00000374116 TAF3Q5VWG9 929 aa16.55■□□□□ 0.24
HMGA1-203ENST00000374116 DCAF15Q66K64 600 aa16.55■□□□□ 0.24
HMGA1-203ENST00000374116 SAPCD2Q86UD0 394 aa16.55■□□□□ 0.24
HMGA1-203ENST00000374116 AMOTL1Q8IY63 956 aa16.55■□□□□ 0.24
HMGA1-203ENST00000374116 ZNF274Q96GC6 653 aaPredicted RBP16.55■□□□□ 0.24
HMGA1-203ENST00000374116 SCAND2PQ9GZW5 306 aaPredicted RBP16.55■□□□□ 0.24
HMGA1-203ENST00000374116 NBPF3Q9H094 633 aa16.55■□□□□ 0.24
HMGA1-203ENST00000374116 LAMB1P07942 1786 aa16.55■□□□□ 0.24
HMGA1-203ENST00000374116 COL2A1P02458 1487 aaPredicted RBP16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms