RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 CDK8P49336 464 aa22.74■■□□□ 1.23
CKS1B-203ENST00000368439 CHD1LQ86WJ1 897 aa22.74■■□□□ 1.23
CKS1B-203ENST00000368439 ANKRD13CQ8N6S4 541 aa22.74■■□□□ 1.23
CKS1B-203ENST00000368439 DDRGK1Q96HY6 314 aa22.74■■□□□ 1.23
CKS1B-203ENST00000368439 KIAA1683Q9H0B3 1180 aa22.74■■□□□ 1.23
CKS1B-203ENST00000368439 ARPP21Q9UBL0 812 aaPredicted RBP22.74■■□□□ 1.23
CKS1B-203ENST00000368439 SRRDQ9UH36 339 aa22.74■■□□□ 1.23
CKS1B-203ENST00000368439 GREB1LQ9C091 1923 aaPredicted RBP22.74■■□□□ 1.23
CKS1B-203ENST00000368439 AKR1B1P15121 316 aa22.73■■□□□ 1.23
CKS1B-203ENST00000368439 PRMT2P55345 433 aa22.73■■□□□ 1.23
CKS1B-203ENST00000368439 FAM110CQ1W6H9 321 aa22.73■■□□□ 1.23
CKS1B-203ENST00000368439 EVI5LQ96CN4 794 aa22.73■■□□□ 1.23
CKS1B-203ENST00000368439 A0A1W2PRG0 241 aa22.72■■□□□ 1.23
CKS1B-203ENST00000368439 FMNL1O95466 1100 aaPredicted RBP22.72■■□□□ 1.23
CKS1B-203ENST00000368439 GNAT2P19087 354 aa22.72■■□□□ 1.23
CKS1B-203ENST00000368439 GCLCP48506 637 aaPredicted RBP22.72■■□□□ 1.23
CKS1B-203ENST00000368439 IRX6P78412 446 aaPredicted RBP22.72■■□□□ 1.23
CKS1B-203ENST00000368439 POTEEQ6S8J3 1075 aa22.72■■□□□ 1.23
CKS1B-203ENST00000368439 TMEM179Q6ZVK1 233 aa22.72■■□□□ 1.23
CKS1B-203ENST00000368439 SIAH1Q8IUQ4 282 aa22.72■■□□□ 1.23
CKS1B-203ENST00000368439 AMOTL1Q8IY63 956 aa22.72■■□□□ 1.23
CKS1B-203ENST00000368439 P2RX7Q99572 595 aaKnown RBP22.72■■□□□ 1.23
CKS1B-203ENST00000368439 ROBO3Q96MS0 1386 aa22.72■■□□□ 1.23
CKS1B-203ENST00000368439 BRCA2P51587 3418 aa22.72■■□□□ 1.23
CKS1B-203ENST00000368439 PATL2C9JE40 543 aaKnown RBP22.71■■□□□ 1.23
CKS1B-203ENST00000368439 MPHOSPH10O00566 681 aaKnown RBP22.71■■□□□ 1.23
CKS1B-203ENST00000368439 USP14P54578 494 aa22.71■■□□□ 1.23
CKS1B-203ENST00000368439 FCGRTP55899 365 aa22.71■■□□□ 1.23
CKS1B-203ENST00000368439 ZYXQ15942 572 aaKnown RBP22.71■■□□□ 1.23
CKS1B-203ENST00000368439 PLEKHM2Q8IWE5 1019 aa22.71■■□□□ 1.23
CKS1B-203ENST00000368439 OSBPL3Q9H4L5 887 aa22.71■■□□□ 1.23
CKS1B-203ENST00000368439 FOXP2O15409 715 aa22.7■■□□□ 1.22
CKS1B-203ENST00000368439 IRX3P78415 501 aaPredicted RBP22.7■■□□□ 1.22
CKS1B-203ENST00000368439 IFNL3Q8IZI9 196 aa22.7■■□□□ 1.22
CKS1B-203ENST00000368439 ZNF333Q96JL9 665 aa22.7■■□□□ 1.22
CKS1B-203ENST00000368439 CCDC17Q96LX7 622 aa22.7■■□□□ 1.22
CKS1B-203ENST00000368439 FEZ1Q99689 392 aa22.7■■□□□ 1.22
CKS1B-203ENST00000368439 MORF4L1Q9UBU8 362 aa22.7■■□□□ 1.22
CKS1B-203ENST00000368439 RLFQ13129 1914 aa22.69■■□□□ 1.22
CKS1B-203ENST00000368439 MYPNQ86TC9 1320 aa22.69■■□□□ 1.22
CKS1B-203ENST00000368439 VCAM1P19320 739 aa22.69■■□□□ 1.22
CKS1B-203ENST00000368439 HOXD10P28358 340 aa22.69■■□□□ 1.22
CKS1B-203ENST00000368439 HERVK_113P62684 666 aa22.69■■□□□ 1.22
CKS1B-203ENST00000368439 CLEC10AQ8IUN9 316 aa22.69■■□□□ 1.22
CKS1B-203ENST00000368439 TXNRD2Q9NNW7 524 aa22.69■■□□□ 1.22
CKS1B-203ENST00000368439 GABRQQ9UN88 632 aa22.69■■□□□ 1.22
CKS1B-203ENST00000368439 PLXNB2O15031 1838 aa22.68■■□□□ 1.22
CKS1B-203ENST00000368439 KIAA0100Q14667 2235 aaKnown RBP22.68■■□□□ 1.22
CKS1B-203ENST00000368439 PEX10O60683 326 aa22.68■■□□□ 1.22
CKS1B-203ENST00000368439 PRKCZQ05513 592 aa22.68■■□□□ 1.22
CKS1B-203ENST00000368439 SLC9C1Q4G0N8 1177 aa22.68■■□□□ 1.22
CKS1B-203ENST00000368439 CATSPERGQ6ZRH7 1159 aa22.68■■□□□ 1.22
CKS1B-203ENST00000368439 CCDC129Q6ZRS4 1044 aa22.68■■□□□ 1.22
CKS1B-203ENST00000368439 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.68■■□□□ 1.22
CKS1B-203ENST00000368439 RBPJLQ9UBG7 517 aa22.68■■□□□ 1.22
CKS1B-203ENST00000368439 TNRC18O15417 2968 aaPredicted RBP22.68■■□□□ 1.22
CKS1B-203ENST00000368439 MINDY4BA8MYZ0 360 aa22.67■■□□□ 1.22
CKS1B-203ENST00000368439 USP17L15C9J2P7 530 aa22.67■■□□□ 1.22
CKS1B-203ENST00000368439 USP17L13C9JLJ4 530 aa22.67■■□□□ 1.22
CKS1B-203ENST00000368439 USP17L11C9JVI0 530 aa22.67■■□□□ 1.22
CKS1B-203ENST00000368439 USP17L18D6R9N7 530 aa22.67■■□□□ 1.22
CKS1B-203ENST00000368439 USP17L22D6RA61 530 aa22.67■■□□□ 1.22
CKS1B-203ENST00000368439 USP17L17D6RBQ6 530 aa22.67■■□□□ 1.22
CKS1B-203ENST00000368439 USP17L19D6RCP7 530 aa22.67■■□□□ 1.22
CKS1B-203ENST00000368439 USP17L20D6RJB6 530 aa22.67■■□□□ 1.22
CKS1B-203ENST00000368439 USP17L24Q0WX57 530 aa22.67■■□□□ 1.22
CKS1B-203ENST00000368439 KIAA1755Q5JYT7 1200 aa22.67■■□□□ 1.22
CKS1B-203ENST00000368439 TICAM2Q86XR7 235 aa22.67■■□□□ 1.22
CKS1B-203ENST00000368439 SH3TC2Q8TF17 1288 aa22.67■■□□□ 1.22
CKS1B-203ENST00000368439 PARP14Q460N5 1801 aa22.66■■□□□ 1.22
CKS1B-203ENST00000368439 APPP05067 770 aa22.66■■□□□ 1.22
CKS1B-203ENST00000368439 RASA1P20936 1047 aa22.66■■□□□ 1.22
CKS1B-203ENST00000368439 TDO2P48775 406 aa22.66■■□□□ 1.22
CKS1B-203ENST00000368439 MLLT1Q03111 559 aaPredicted RBP22.66■■□□□ 1.22
CKS1B-203ENST00000368439 TNPO2O14787 897 aaKnown RBP22.65■■□□□ 1.22
CKS1B-203ENST00000368439 ICA1Q05084 483 aa22.65■■□□□ 1.22
CKS1B-203ENST00000368439 Q3C1V9 767 aa22.65■■□□□ 1.22
CKS1B-203ENST00000368439 NBPF11Q86T75 865 aa22.65■■□□□ 1.22
CKS1B-203ENST00000368439 HELLSQ9NRZ9 838 aa22.65■■□□□ 1.22
CKS1B-203ENST00000368439 TMX2Q9Y320 296 aa22.65■■□□□ 1.22
CKS1B-203ENST00000368439 A0A0D9SFI3 127 aa22.64■■□□□ 1.21
CKS1B-203ENST00000368439 POTEFA5A3E0 1075 aa22.64■■□□□ 1.21
CKS1B-203ENST00000368439 CNMDO75829 334 aa22.64■■□□□ 1.21
CKS1B-203ENST00000368439 FLT3LGP49771 235 aa22.64■■□□□ 1.21
CKS1B-203ENST00000368439 STK11IPQ8N1F8 1099 aa22.64■■□□□ 1.21
CKS1B-203ENST00000368439 RAET1EQ8TD07 263 aa22.64■■□□□ 1.21
CKS1B-203ENST00000368439 GTF3C2Q8WUA4 911 aaPredicted RBP22.64■■□□□ 1.21
CKS1B-203ENST00000368439 FAM227BQ96M60 508 aa22.64■■□□□ 1.21
CKS1B-203ENST00000368439 RPAP3Q9H6T3 665 aaPredicted RBP22.64■■□□□ 1.21
CKS1B-203ENST00000368439 A0A0G2JMZ2 1700 aa22.63■■□□□ 1.21
CKS1B-203ENST00000368439 GRK4P32298 578 aa22.63■■□□□ 1.21
CKS1B-203ENST00000368439 VPS53Q5VIR6 699 aa22.63■■□□□ 1.21
CKS1B-203ENST00000368439 LBX2Q6XYB7 198 aa22.63■■□□□ 1.21
CKS1B-203ENST00000368439 GPRC5AQ8NFJ5 357 aa22.63■■□□□ 1.21
CKS1B-203ENST00000368439 NACAP1Q9BZK3 213 aa22.63■■□□□ 1.21
CKS1B-203ENST00000368439 KANSL2Q9H9L4 492 aa22.63■■□□□ 1.21
CKS1B-203ENST00000368439 ARHGEF10LQ9HCE6 1279 aa22.63■■□□□ 1.21
CKS1B-203ENST00000368439 TRIM6-TRIM34B2RNG4 842 aa22.62■■□□□ 1.21
CKS1B-203ENST00000368439 EEF2P13639 858 aaKnown RBP22.62■■□□□ 1.21
CKS1B-203ENST00000368439 PDE4AP27815 886 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms