RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 PLCB3Q01970 1234 aa9.89□□□□□ -0.83
SYNE1-209ENST00000367257 LEO1Q8WVC0 666 aaPredicted RBP9.89□□□□□ -0.83
SYNE1-209ENST00000367257 ZKSCAN3Q9BRR0 538 aa9.89□□□□□ -0.83
SYNE1-209ENST00000367257 BAIAP2L1Q9UHR4 511 aa9.89□□□□□ -0.83
SYNE1-209ENST00000367257 RIPOR2Q9Y4F9 1068 aa9.89□□□□□ -0.83
SYNE1-209ENST00000367257 KDM3AQ9Y4C1 1321 aa9.89□□□□□ -0.83
SYNE1-209ENST00000367257 GOLGA6BA6NDN3 693 aa9.89□□□□□ -0.83
SYNE1-209ENST00000367257 N4BP1O75113 896 aaKnown RBP9.89□□□□□ -0.83
SYNE1-209ENST00000367257 KIF11P52732 1056 aa9.89□□□□□ -0.83
SYNE1-209ENST00000367257 MRPS9P82933 396 aaKnown RBP9.89□□□□□ -0.83
SYNE1-209ENST00000367257 PHLDB3Q6NSJ2 640 aa9.89□□□□□ -0.83
SYNE1-209ENST00000367257 UBLCP1Q8WVY7 318 aaPredicted RBP9.89□□□□□ -0.83
SYNE1-209ENST00000367257 MYO1AQ9UBC5 1043 aa9.89□□□□□ -0.83
SYNE1-209ENST00000367257 KCNH3Q9ULD8 1083 aa9.89□□□□□ -0.83
SYNE1-209ENST00000367257 RABGAP1Q9Y3P9 1069 aa9.89□□□□□ -0.83
SYNE1-209ENST00000367257 H0YCG3 227 aa9.89□□□□□ -0.83
SYNE1-209ENST00000367257 RNF40O75150 1001 aa9.89□□□□□ -0.83
SYNE1-209ENST00000367257 BCRP11274 1271 aa9.89□□□□□ -0.83
SYNE1-209ENST00000367257 TNNI2P48788 182 aa9.89□□□□□ -0.83
SYNE1-209ENST00000367257 LMBR1LQ6UX01 489 aa9.89□□□□□ -0.83
SYNE1-209ENST00000367257 CCT6BQ92526 530 aa9.89□□□□□ -0.83
SYNE1-209ENST00000367257 NT5C3AQ9H0P0 336 aa9.89□□□□□ -0.83
SYNE1-209ENST00000367257 KCNK9Q9NPC2 374 aa9.89□□□□□ -0.83
SYNE1-209ENST00000367257 LARSQ9P2J5 1176 aaKnown RBP9.89□□□□□ -0.83
SYNE1-209ENST00000367257 I3L4J1 428 aa9.89□□□□□ -0.83
SYNE1-209ENST00000367257 PCP11498 1178 aaKnown RBP9.89□□□□□ -0.83
SYNE1-209ENST00000367257 RFC4P35249 363 aa9.89□□□□□ -0.83
SYNE1-209ENST00000367257 FANCCQ00597 558 aa9.89□□□□□ -0.83
SYNE1-209ENST00000367257 RNASELQ05823 741 aaKnown RBP9.89□□□□□ -0.83
SYNE1-209ENST00000367257 ARMC9Q7Z3E5 817 aa9.89□□□□□ -0.83
SYNE1-209ENST00000367257 TRIM58Q8NG06 486 aa9.89□□□□□ -0.83
SYNE1-209ENST00000367257 SETDB2Q96T68 719 aa9.89□□□□□ -0.83
SYNE1-209ENST00000367257 Q9H521 79 aa9.89□□□□□ -0.83
SYNE1-209ENST00000367257 ADGRB3O60242 1522 aa9.88□□□□□ -0.83
SYNE1-209ENST00000367257 EVI5O60447 810 aa9.88□□□□□ -0.83
SYNE1-209ENST00000367257 RFC1P35251 1148 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-209ENST00000367257 OGFOD1Q8N543 542 aa9.88□□□□□ -0.83
SYNE1-209ENST00000367257 APPBP2Q92624 585 aa9.88□□□□□ -0.83
SYNE1-209ENST00000367257 TEKT1Q969V4 418 aa9.88□□□□□ -0.83
SYNE1-209ENST00000367257 HAUS8Q9BT25 410 aa9.88□□□□□ -0.83
SYNE1-209ENST00000367257 DDX21Q9NR30 783 aaKnown RBP eCLIP9.88□□□□□ -0.83
SYNE1-209ENST00000367257 PPP1R12AO14974 1030 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-209ENST00000367257 MARCKSP29966 332 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-209ENST00000367257 CDC25BP30305 580 aa9.88□□□□□ -0.83
SYNE1-209ENST00000367257 MAN1A1P33908 653 aa9.88□□□□□ -0.83
SYNE1-209ENST00000367257 PSMD2Q13200 908 aa9.88□□□□□ -0.83
SYNE1-209ENST00000367257 RAB11FIP4Q86YS3 637 aa9.88□□□□□ -0.83
SYNE1-209ENST00000367257 VAT1LQ9HCJ6 419 aa9.88□□□□□ -0.83
SYNE1-209ENST00000367257 THEGQ9P2T0 379 aa9.88□□□□□ -0.83
SYNE1-209ENST00000367257 ARHGAP31Q2M1Z3 1444 aa9.88□□□□□ -0.83
SYNE1-209ENST00000367257 IFT81Q8WYA0 676 aa9.88□□□□□ -0.83
SYNE1-209ENST00000367257 DSCC1Q9BVC3 393 aa9.88□□□□□ -0.83
SYNE1-209ENST00000367257 HOMER3Q9NSC5 361 aa9.88□□□□□ -0.83
SYNE1-209ENST00000367257 WWC3Q9ULE0 1092 aa9.88□□□□□ -0.83
SYNE1-209ENST00000367257 ANGEL1Q9UNK9 670 aaKnown RBP9.88□□□□□ -0.83
SYNE1-209ENST00000367257 KDM2BQ8NHM5 1336 aa9.88□□□□□ -0.83
SYNE1-209ENST00000367257 ZSCAN20P17040 1043 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-209ENST00000367257 PSMC4P43686 418 aa9.88□□□□□ -0.83
SYNE1-209ENST00000367257 TMED8Q6PL24 325 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-209ENST00000367257 TPTE2Q6XPS3 522 aa9.88□□□□□ -0.83
SYNE1-209ENST00000367257 GBP7Q8N8V2 638 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-209ENST00000367257 ATP2A3Q93084 1043 aa9.88□□□□□ -0.83
SYNE1-209ENST00000367257 LZTFL1Q9NQ48 299 aa9.88□□□□□ -0.83
SYNE1-209ENST00000367257 PCDH11XQ9BZA7 1347 aa9.87□□□□□ -0.83
SYNE1-209ENST00000367257 PCDH11YQ9BZA8 1340 aa9.87□□□□□ -0.83
SYNE1-209ENST00000367257 EDC4Q6P2E9 1401 aaKnown RBP9.87□□□□□ -0.83
SYNE1-209ENST00000367257 SPOPO43791 374 aa9.87□□□□□ -0.83
SYNE1-209ENST00000367257 COPS6Q7L5N1 327 aa9.87□□□□□ -0.83
SYNE1-209ENST00000367257 PNMA8AQ86V59 439 aaPredicted RBP9.87□□□□□ -0.83
SYNE1-209ENST00000367257 SLC17A8Q8NDX2 589 aa9.87□□□□□ -0.83
SYNE1-209ENST00000367257 FAM81BQ96LP2 452 aa9.87□□□□□ -0.83
SYNE1-209ENST00000367257 TYW1Q9NV66 732 aaKnown RBP9.87□□□□□ -0.83
SYNE1-209ENST00000367257 PSDA5PKW4 1024 aaPredicted RBP9.87□□□□□ -0.83
SYNE1-209ENST00000367257 EIF3CLB5ME19 914 aaKnown RBP9.87□□□□□ -0.83
SYNE1-209ENST00000367257 GUCY2CP25092 1073 aa9.87□□□□□ -0.83
SYNE1-209ENST00000367257 ABCD1P33897 745 aa9.87□□□□□ -0.83
SYNE1-209ENST00000367257 ITIH3Q06033 890 aa9.87□□□□□ -0.83
SYNE1-209ENST00000367257 MCUR1Q96AQ8 359 aa9.87□□□□□ -0.83
SYNE1-209ENST00000367257 EIF3CQ99613 913 aaKnown RBP9.87□□□□□ -0.83
SYNE1-209ENST00000367257 SNRKQ9NRH2 765 aa9.87□□□□□ -0.83
SYNE1-209ENST00000367257 RIMS2Q9UQ26 1411 aa9.87□□□□□ -0.83
SYNE1-209ENST00000367257 TROVE2P10155 538 aaKnown RBP eCLIP9.87□□□□□ -0.83
SYNE1-209ENST00000367257 EXOC4Q96A65 974 aa9.87□□□□□ -0.83
SYNE1-209ENST00000367257 HVCN1Q96D96 273 aa9.87□□□□□ -0.83
SYNE1-209ENST00000367257 FNBP1Q96RU3 617 aa9.87□□□□□ -0.83
SYNE1-209ENST00000367257 NUF2Q9BZD4 464 aa9.87□□□□□ -0.83
SYNE1-209ENST00000367257 YEATS2Q9ULM3 1422 aa9.87□□□□□ -0.83
SYNE1-209ENST00000367257 EFCAB8A8MWE9 144 aa9.87□□□□□ -0.83
SYNE1-209ENST00000367257 PHBP35232 272 aa9.87□□□□□ -0.83
SYNE1-209ENST00000367257 FAM212AQ96EL1 285 aa9.87□□□□□ -0.83
SYNE1-209ENST00000367257 TPCN1Q9ULQ1 816 aa9.87□□□□□ -0.83
SYNE1-209ENST00000367257 TRAF5O00463 557 aa9.86□□□□□ -0.83
SYNE1-209ENST00000367257 RHOXF2BP0C7M4 288 aa9.86□□□□□ -0.83
SYNE1-209ENST00000367257 TCP1P17987 556 aaKnown RBP9.86□□□□□ -0.83
SYNE1-209ENST00000367257 PDE1CQ14123 709 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-209ENST00000367257 ZC3H15Q8WU90 426 aaKnown RBP9.86□□□□□ -0.83
SYNE1-209ENST00000367257 TSC22D3Q99576 134 aa9.86□□□□□ -0.83
SYNE1-209ENST00000367257 RHOXF2Q9BQY4 288 aa9.86□□□□□ -0.83
SYNE1-209ENST00000367257 RNF216Q9NWF9 866 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-209ENST00000367257 BLMP54132 1417 aaPredicted RBP9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms