RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 ABCC12Q96J65 1359 aa8.94□□□□□ -0.98
VPS13A-201ENST00000355766 SIPA1L3O60292 1781 aaPredicted RBP8.94□□□□□ -0.98
VPS13A-201ENST00000355766 PPP1R12BO60237 982 aaPredicted RBP8.93□□□□□ -0.98
VPS13A-201ENST00000355766 CT47B1P0C2W7 299 aaPredicted RBP8.93□□□□□ -0.98
VPS13A-201ENST00000355766 CALD1Q05682 793 aaKnown RBP8.93□□□□□ -0.98
VPS13A-201ENST00000355766 SPEM2Q0P670 501 aa8.93□□□□□ -0.98
VPS13A-201ENST00000355766 CRY2Q49AN0 593 aa8.93□□□□□ -0.98
VPS13A-201ENST00000355766 TPTE2Q6XPS3 522 aa8.93□□□□□ -0.98
VPS13A-201ENST00000355766 TRMT2AQ8IZ69 625 aaKnown RBP8.93□□□□□ -0.98
VPS13A-201ENST00000355766 CEP63Q96MT8 703 aa8.93□□□□□ -0.98
VPS13A-201ENST00000355766 PLEKHF1Q96S99 279 aa8.93□□□□□ -0.98
VPS13A-201ENST00000355766 ZNF408Q9H9D4 720 aa8.93□□□□□ -0.98
VPS13A-201ENST00000355766 MAPK8IP3Q9UPT6 1336 aa8.93□□□□□ -0.98
VPS13A-201ENST00000355766 CEMIPQ8WUJ3 1361 aa8.92□□□□□ -0.98
VPS13A-201ENST00000355766 CDHR2Q9BYE9 1310 aa8.92□□□□□ -0.98
VPS13A-201ENST00000355766 APAF1O14727 1248 aa8.92□□□□□ -0.98
VPS13A-201ENST00000355766 PIP4K2AP48426 406 aaPredicted RBP8.92□□□□□ -0.98
VPS13A-201ENST00000355766 LMOD3Q0VAK6 560 aa8.92□□□□□ -0.98
VPS13A-201ENST00000355766 NIM1KQ8IY84 436 aa8.92□□□□□ -0.98
VPS13A-201ENST00000355766 GLMNQ92990 594 aa8.92□□□□□ -0.98
VPS13A-201ENST00000355766 SUSD3Q96L08 255 aa8.92□□□□□ -0.98
VPS13A-201ENST00000355766 BRD7Q9NPI1 651 aa8.92□□□□□ -0.98
VPS13A-201ENST00000355766 ANKIB1Q9P2G1 1089 aa8.92□□□□□ -0.98
VPS13A-201ENST00000355766 NIP7Q9Y221 180 aaKnown RBP eCLIP8.92□□□□□ -0.98
VPS13A-201ENST00000355766 FAM177BA6PVY3 158 aa8.91□□□□□ -0.98
VPS13A-201ENST00000355766 RASA1P20936 1047 aa8.91□□□□□ -0.98
VPS13A-201ENST00000355766 SLFN5Q08AF3 891 aa8.91□□□□□ -0.98
VPS13A-201ENST00000355766 RAB44Q7Z6P3 723 aaPredicted RBP8.91□□□□□ -0.98
VPS13A-201ENST00000355766 SLC51AQ86UW1 340 aa8.91□□□□□ -0.98
VPS13A-201ENST00000355766 TNFRSF25Q93038 417 aa8.91□□□□□ -0.98
VPS13A-201ENST00000355766 GCC1Q96CN9 775 aa8.91□□□□□ -0.98
VPS13A-201ENST00000355766 PGAP2Q9UHJ9 254 aa8.91□□□□□ -0.98
VPS13A-201ENST00000355766 STARD13Q9Y3M8 1113 aa8.91□□□□□ -0.98
VPS13A-201ENST00000355766 RBM19Q9Y4C8 960 aaKnown RBP8.91□□□□□ -0.98
VPS13A-201ENST00000355766 MAFBQ9Y5Q3 323 aaPredicted RBP8.91□□□□□ -0.98
VPS13A-201ENST00000355766 CASP8AP2Q9UKL3 1982 aa8.91□□□□□ -0.98
VPS13A-201ENST00000355766 IBTKQ9P2D0 1353 aaPredicted RBP8.9□□□□□ -0.98
VPS13A-201ENST00000355766 FAM155AB1AL88 458 aaPredicted RBP8.9□□□□□ -0.98
VPS13A-201ENST00000355766 PPIP5K2O43314 1243 aa8.9□□□□□ -0.98
VPS13A-201ENST00000355766 GMPSP49915 693 aaPredicted RBP8.9□□□□□ -0.98
VPS13A-201ENST00000355766 HUNKP57058 714 aa8.9□□□□□ -0.98
VPS13A-201ENST00000355766 TYRO3Q06418 890 aa8.9□□□□□ -0.98
VPS13A-201ENST00000355766 DUSP27Q5VZP5 1158 aa8.9□□□□□ -0.98
VPS13A-201ENST00000355766 CDC37L1Q7L3B6 337 aa8.9□□□□□ -0.98
VPS13A-201ENST00000355766 CTU1Q7Z7A3 348 aaKnown RBP8.9□□□□□ -0.98
VPS13A-201ENST00000355766 IL17REQ8NFR9 667 aa8.9□□□□□ -0.98
VPS13A-201ENST00000355766 C2orf49Q9BVC5 232 aaPredicted RBP8.9□□□□□ -0.98
VPS13A-201ENST00000355766 MYH16Q9H6N6 1097 aa8.9□□□□□ -0.98
VPS13A-201ENST00000355766 KCNH4Q9UQ05 1017 aa8.9□□□□□ -0.98
VPS13A-201ENST00000355766 USP16Q9Y5T5 823 aa8.9□□□□□ -0.98
VPS13A-201ENST00000355766 GNAT3A8MTJ3 354 aa8.89□□□□□ -0.99
VPS13A-201ENST00000355766 M0R082 166 aa8.89□□□□□ -0.99
VPS13A-201ENST00000355766 U2SURPO15042 1029 aaKnown RBP8.89□□□□□ -0.99
VPS13A-201ENST00000355766 SPATA31C1P0DKV0 1188 aa8.89□□□□□ -0.99
VPS13A-201ENST00000355766 HOXA10P31260 410 aaPredicted RBP8.89□□□□□ -0.99
VPS13A-201ENST00000355766 COL9A3Q14050 684 aaPredicted RBP8.89□□□□□ -0.99
VPS13A-201ENST00000355766 AOC3Q16853 763 aa8.89□□□□□ -0.99
VPS13A-201ENST00000355766 ALDH16A1Q8IZ83 802 aa8.89□□□□□ -0.99
VPS13A-201ENST00000355766 STAG2Q8N3U4 1231 aa8.89□□□□□ -0.99
VPS13A-201ENST00000355766 GAS2L2Q8NHY3 880 aa8.89□□□□□ -0.99
VPS13A-201ENST00000355766 ZNF417Q8TAU3 575 aa8.89□□□□□ -0.99
VPS13A-201ENST00000355766 TRPM4Q8TD43 1214 aa8.89□□□□□ -0.99
VPS13A-201ENST00000355766 SCG3Q8WXD2 468 aaKnown RBP8.89□□□□□ -0.99
VPS13A-201ENST00000355766 RPGRQ92834 1020 aaKnown RBP8.89□□□□□ -0.99
VPS13A-201ENST00000355766 ZNF428Q96B54 188 aa8.89□□□□□ -0.99
VPS13A-201ENST00000355766 ZNF587Q96SQ5 575 aaPredicted RBP8.89□□□□□ -0.99
VPS13A-201ENST00000355766 RCAN3Q9UKA8 241 aa8.89□□□□□ -0.99
VPS13A-201ENST00000355766 PRAMEF22A3QJZ6 481 aa8.88□□□□□ -0.99
VPS13A-201ENST00000355766 KCNQ3O43525 872 aa8.88□□□□□ -0.99
VPS13A-201ENST00000355766 TMPOP42166 694 aaKnown RBP8.88□□□□□ -0.99
VPS13A-201ENST00000355766 SEC13P55735 322 aa8.88□□□□□ -0.99
VPS13A-201ENST00000355766 CXCL9Q07325 125 aa8.88□□□□□ -0.99
VPS13A-201ENST00000355766 RGMBQ6NW40 437 aa8.88□□□□□ -0.99
VPS13A-201ENST00000355766 C8orf86Q6ZUL3 223 aa8.88□□□□□ -0.99
VPS13A-201ENST00000355766 CCDC146Q8IYE0 955 aa8.88□□□□□ -0.99
VPS13A-201ENST00000355766 NYXQ9GZU5 481 aa8.88□□□□□ -0.99
VPS13A-201ENST00000355766 VPS33BQ9H267 617 aa8.88□□□□□ -0.99
VPS13A-201ENST00000355766 RNF186Q9NXI6 227 aa8.88□□□□□ -0.99
VPS13A-201ENST00000355766 BTBD11A6QL63 1104 aa8.87□□□□□ -0.99
VPS13A-201ENST00000355766 TRPA1O75762 1119 aa8.87□□□□□ -0.99
VPS13A-201ENST00000355766 ALBP02768 609 aa8.87□□□□□ -0.99
VPS13A-201ENST00000355766 PRKAR2BP31323 418 aa8.87□□□□□ -0.99
VPS13A-201ENST00000355766 ADH7P40394 386 aa8.87□□□□□ -0.99
VPS13A-201ENST00000355766 KIF23Q02241 960 aaPredicted RBP8.87□□□□□ -0.99
VPS13A-201ENST00000355766 NFE2L2Q16236 605 aa8.87□□□□□ -0.99
VPS13A-201ENST00000355766 HLFQ16534 295 aa8.87□□□□□ -0.99
VPS13A-201ENST00000355766 HABP4Q5JVS0 413 aaKnown RBP8.87□□□□□ -0.99
VPS13A-201ENST00000355766 MICALL1Q8N3F8 863 aa8.87□□□□□ -0.99
VPS13A-201ENST00000355766 CRAMP1Q96RY5 1269 aa8.87□□□□□ -0.99
VPS13A-201ENST00000355766 PRDM6Q9NQX0 595 aa8.87□□□□□ -0.99
VPS13A-201ENST00000355766 ZNRF3Q9ULT6 936 aa8.87□□□□□ -0.99
VPS13A-201ENST00000355766 SUPT16HQ9Y5B9 1047 aaKnown RBP8.87□□□□□ -0.99
VPS13A-201ENST00000355766 HTATSF1O43719 755 aaKnown RBP8.86□□□□□ -0.99
VPS13A-201ENST00000355766 LGR5O75473 907 aa8.86□□□□□ -0.99
VPS13A-201ENST00000355766 SNRPA1P09661 255 aaKnown RBP8.86□□□□□ -0.99
VPS13A-201ENST00000355766 DOC2BQ14184 412 aa8.86□□□□□ -0.99
VPS13A-201ENST00000355766 CRTC2Q53ET0 693 aaPredicted RBP8.86□□□□□ -0.99
VPS13A-201ENST00000355766 XP32Q5T750 250 aa8.86□□□□□ -0.99
VPS13A-201ENST00000355766 BTLAQ7Z6A9 289 aa8.86□□□□□ -0.99
VPS13A-201ENST00000355766 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms