RNA–Protein interactions for RNA: ENST00000334060.8

SHOX-201, Transcript of short stature homeobox, humanhuman

TSL 5 BASIC

Gene SHOX, Length 1,951 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-201ENST00000334060 ZNF341Q9BYN7 854 aa19.46■□□□□ 0.71
SHOX-201ENST00000334060 CNNM2Q9H8M5 875 aa19.46■□□□□ 0.71
SHOX-201ENST00000334060 SNCAIPQ9Y6H5 919 aa19.46■□□□□ 0.71
SHOX-201ENST00000334060 PASKQ96RG2 1323 aa19.46■□□□□ 0.71
SHOX-201ENST00000334060 IFIT3O14879 490 aaKnown RBP19.45■□□□□ 0.7
SHOX-201ENST00000334060 ATP2B2Q01814 1243 aa19.45■□□□□ 0.7
SHOX-201ENST00000334060 ST3GAL1Q11201 340 aa19.45■□□□□ 0.7
SHOX-201ENST00000334060 TPCN1Q9ULQ1 816 aa19.45■□□□□ 0.7
SHOX-201ENST00000334060 STX8Q9UNK0 236 aa19.45■□□□□ 0.7
SHOX-201ENST00000334060 SLC4A3P48751 1232 aa19.44■□□□□ 0.7
SHOX-201ENST00000334060 ZYXQ15942 572 aaKnown RBP19.44■□□□□ 0.7
SHOX-201ENST00000334060 TMEM67Q5HYA8 995 aa19.44■□□□□ 0.7
SHOX-201ENST00000334060 CCDC144CPQ8IYA2 1237 aa19.44■□□□□ 0.7
SHOX-201ENST00000334060 EEF2P13639 858 aaKnown RBP19.44■□□□□ 0.7
SHOX-201ENST00000334060 PSMA5P28066 241 aa19.44■□□□□ 0.7
SHOX-201ENST00000334060 RABEP1Q15276 862 aa19.44■□□□□ 0.7
SHOX-201ENST00000334060 ELP3Q9H9T3 547 aa19.44■□□□□ 0.7
SHOX-201ENST00000334060 MTMR4Q9NYA4 1195 aa19.44■□□□□ 0.7
SHOX-201ENST00000334060 PLIN4Q96Q06 1357 aa19.44■□□□□ 0.7
SHOX-201ENST00000334060 CEP350Q5VT06 3117 aa19.44■□□□□ 0.7
SHOX-201ENST00000334060 DOCK1Q14185 1865 aa19.43■□□□□ 0.7
SHOX-201ENST00000334060 HTRA3P83110 453 aa19.43■□□□□ 0.7
SHOX-201ENST00000334060 STK3Q13188 491 aa19.43■□□□□ 0.7
SHOX-201ENST00000334060 DCAF15Q66K64 600 aa19.43■□□□□ 0.7
SHOX-201ENST00000334060 CLIP2Q9UDT6 1046 aa19.43■□□□□ 0.7
SHOX-201ENST00000334060 GJA5P36382 358 aa19.43■□□□□ 0.7
SHOX-201ENST00000334060 MKRN3Q13064 507 aaKnown RBP19.43■□□□□ 0.7
SHOX-201ENST00000334060 TMEM47Q9BQJ4 181 aa19.43■□□□□ 0.7
SHOX-201ENST00000334060 TOMM70O94826 608 aa19.42■□□□□ 0.7
SHOX-201ENST00000334060 PTPRAP18433 802 aa19.42■□□□□ 0.7
SHOX-201ENST00000334060 NECAB1Q8N987 351 aa19.42■□□□□ 0.7
SHOX-201ENST00000334060 UBAC1Q9BSL1 405 aa19.42■□□□□ 0.7
SHOX-201ENST00000334060 GBA2Q9HCG7 927 aaPredicted RBP19.42■□□□□ 0.7
SHOX-201ENST00000334060 PHIPQ8WWQ0 1821 aa19.42■□□□□ 0.7
SHOX-201ENST00000334060 ICA1Q05084 483 aa19.41■□□□□ 0.7
SHOX-201ENST00000334060 SCYL3Q8IZE3 742 aa19.41■□□□□ 0.7
SHOX-201ENST00000334060 AGXT2Q9BYV1 514 aa19.41■□□□□ 0.7
SHOX-201ENST00000334060 CPVLQ9H3G5 476 aa19.41■□□□□ 0.7
SHOX-201ENST00000334060 NCOA5Q9HCD5 579 aaKnown RBP19.41■□□□□ 0.7
SHOX-201ENST00000334060 PPP1R12BO60237 982 aaPredicted RBP19.41■□□□□ 0.7
SHOX-201ENST00000334060 CTNND1O60716 968 aaKnown RBP19.41■□□□□ 0.7
SHOX-201ENST00000334060 EIF5BO60841 1220 aaKnown RBP19.41■□□□□ 0.7
SHOX-201ENST00000334060 PCP11498 1178 aaKnown RBP19.41■□□□□ 0.7
SHOX-201ENST00000334060 ME3Q16798 604 aa19.41■□□□□ 0.7
SHOX-201ENST00000334060 TMEM179Q6ZVK1 233 aa19.41■□□□□ 0.7
SHOX-201ENST00000334060 SPICE1Q8N0Z3 855 aa19.41■□□□□ 0.7
SHOX-201ENST00000334060 CMTR1Q8N1G2 835 aaKnown RBP19.41■□□□□ 0.7
SHOX-201ENST00000334060 NUP88Q99567 741 aaPredicted RBP19.41■□□□□ 0.7
SHOX-201ENST00000334060 NAP1L2Q9ULW6 460 aaPredicted RBP19.41■□□□□ 0.7
SHOX-201ENST00000334060 HPS5Q9UPZ3 1129 aa19.41■□□□□ 0.7
SHOX-201ENST00000334060 KLF18A0A0U1RQI7 1052 aa19.4■□□□□ 0.7
SHOX-201ENST00000334060 MAP3K9P80192 1104 aa19.4■□□□□ 0.7
SHOX-201ENST00000334060 WTAPQ15007 396 aa19.4■□□□□ 0.7
SHOX-201ENST00000334060 SMC1BQ8NDV3 1235 aa19.4■□□□□ 0.7
SHOX-201ENST00000334060 TBC1D2Q9BYX2 928 aa19.4■□□□□ 0.7
SHOX-201ENST00000334060 TRIM75PA6NK02 468 aa19.39■□□□□ 0.7
SHOX-201ENST00000334060 RAD21O60216 631 aa19.39■□□□□ 0.7
SHOX-201ENST00000334060 NOVP48745 357 aa19.39■□□□□ 0.7
SHOX-201ENST00000334060 CCT2P78371 535 aaKnown RBP19.39■□□□□ 0.7
SHOX-201ENST00000334060 MAP3K11Q16584 847 aa19.39■□□□□ 0.7
SHOX-201ENST00000334060 LDLRAD1Q5T700 205 aa19.39■□□□□ 0.7
SHOX-201ENST00000334060 IQCA1Q86XH1 822 aa19.39■□□□□ 0.7
SHOX-201ENST00000334060 CCDC17Q96LX7 622 aa19.39■□□□□ 0.7
SHOX-201ENST00000334060 ZNF287Q9HBT7 754 aa19.39■□□□□ 0.7
SHOX-201ENST00000334060 ZHX2Q9Y6X8 837 aa19.39■□□□□ 0.7
SHOX-201ENST00000334060 MYH4Q9Y623 1939 aa19.39■□□□□ 0.69
SHOX-201ENST00000334060 HMGB1P09429 215 aaKnown RBP19.39■□□□□ 0.69
SHOX-201ENST00000334060 GOLGA8HP0CJ92 632 aa19.39■□□□□ 0.69
SHOX-201ENST00000334060 NF2P35240 595 aa19.39■□□□□ 0.69
SHOX-201ENST00000334060 FGD1P98174 961 aa19.39■□□□□ 0.69
SHOX-201ENST00000334060 IFIT1BQ5T764 474 aaKnown RBP19.39■□□□□ 0.69
SHOX-201ENST00000334060 MICU3Q86XE3 530 aa19.39■□□□□ 0.69
SHOX-201ENST00000334060 OTUD5Q96G74 571 aa19.39■□□□□ 0.69
SHOX-201ENST00000334060 FOXD4L1Q9NU39 408 aa19.39■□□□□ 0.69
SHOX-201ENST00000334060 TCP11L1Q9NUJ3 509 aa19.39■□□□□ 0.69
SHOX-201ENST00000334060 TRPM7Q96QT4 1865 aa19.39■□□□□ 0.69
SHOX-201ENST00000334060 IREB2P48200 963 aaKnown RBP19.38■□□□□ 0.69
SHOX-201ENST00000334060 SPP2Q13103 211 aa19.38■□□□□ 0.69
SHOX-201ENST00000334060 SLC35G1Q2M3R5 365 aa19.38■□□□□ 0.69
SHOX-201ENST00000334060 RBM46Q8TBY0 533 aaKnown RBP19.38■□□□□ 0.69
SHOX-201ENST00000334060 CABP5Q9NP86 173 aa19.38■□□□□ 0.69
SHOX-201ENST00000334060 CDC27P30260 824 aa19.37■□□□□ 0.69
SHOX-201ENST00000334060 MTMR2Q13614 643 aa19.37■□□□□ 0.69
SHOX-201ENST00000334060 APOA5Q6Q788 366 aa19.37■□□□□ 0.69
SHOX-201ENST00000334060 NFXL1Q6ZNB6 911 aa19.37■□□□□ 0.69
SHOX-201ENST00000334060 STAG2Q8N3U4 1231 aa19.37■□□□□ 0.69
SHOX-201ENST00000334060 SPRYD3Q8NCJ5 442 aa19.37■□□□□ 0.69
SHOX-201ENST00000334060 NUP133Q8WUM0 1156 aa19.37■□□□□ 0.69
SHOX-201ENST00000334060 FRMPD2Q68DX3 1309 aaPredicted RBP19.37■□□□□ 0.69
SHOX-201ENST00000334060 USP17L5A8MUK1 530 aa19.37■□□□□ 0.69
SHOX-201ENST00000334060 IRF6O14896 467 aa19.37■□□□□ 0.69
SHOX-201ENST00000334060 TTLL1O95922 423 aa19.37■□□□□ 0.69
SHOX-201ENST00000334060 ASNSP08243 561 aa19.37■□□□□ 0.69
SHOX-201ENST00000334060 PDIA3P30101 505 aaKnown RBP19.37■□□□□ 0.69
SHOX-201ENST00000334060 NOL9Q5SY16 702 aaKnown RBP19.37■□□□□ 0.69
SHOX-201ENST00000334060 NBPF11Q86T75 865 aa19.37■□□□□ 0.69
SHOX-201ENST00000334060 ZNF654Q8IZM8 581 aa19.37■□□□□ 0.69
SHOX-201ENST00000334060 PNMA1Q8ND90 353 aa19.37■□□□□ 0.69
SHOX-201ENST00000334060 TMEM87BQ96K49 555 aa19.37■□□□□ 0.69
SHOX-201ENST00000334060 KANSL2Q9H9L4 492 aa19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms