RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 VPS54Q9P1Q0 977 aa14.24□□□□□ -0.13
PTCD1-201ENST00000292478 SERTAD1Q9UHV2 236 aa14.24□□□□□ -0.13
PTCD1-201ENST00000292478 CDK12Q9NYV4 1490 aaPredicted RBP14.24□□□□□ -0.13
PTCD1-201ENST00000292478 CCDC169A6NNP5 214 aa14.23□□□□□ -0.13
PTCD1-201ENST00000292478 MNAT1P51948 309 aa14.23□□□□□ -0.13
PTCD1-201ENST00000292478 TICAM2Q86XR7 235 aa14.23□□□□□ -0.13
PTCD1-201ENST00000292478 TAB2Q9NYJ8 693 aa14.23□□□□□ -0.13
PTCD1-201ENST00000292478 RIOK3O14730 519 aaKnown RBP14.23□□□□□ -0.13
PTCD1-201ENST00000292478 ZNF853P0CG23 659 aa14.23□□□□□ -0.13
PTCD1-201ENST00000292478 BLIDQ8IZY5 108 aa14.23□□□□□ -0.13
PTCD1-201ENST00000292478 SMC6Q96SB8 1091 aa14.23□□□□□ -0.13
PTCD1-201ENST00000292478 UTP11Q9Y3A2 253 aaKnown RBP14.23□□□□□ -0.13
PTCD1-201ENST00000292478 BCRP11274 1271 aa14.23□□□□□ -0.13
PTCD1-201ENST00000292478 CCDC114Q96M63 670 aa14.23□□□□□ -0.13
PTCD1-201ENST00000292478 IWS1Q96ST2 819 aa14.23□□□□□ -0.13
PTCD1-201ENST00000292478 TXNDC16Q9P2K2 825 aa14.23□□□□□ -0.13
PTCD1-201ENST00000292478 EIF6P56537 245 aaKnown RBP14.23□□□□□ -0.13
PTCD1-201ENST00000292478 PNMA2Q9UL42 364 aa14.23□□□□□ -0.13
PTCD1-201ENST00000292478 METP08581 1390 aa14.23□□□□□ -0.13
PTCD1-201ENST00000292478 SMCO2A6NFE2 343 aa14.23□□□□□ -0.13
PTCD1-201ENST00000292478 CHMP2AO43633 222 aa14.23□□□□□ -0.13
PTCD1-201ENST00000292478 UBLCP1Q8WVY7 318 aaPredicted RBP14.23□□□□□ -0.13
PTCD1-201ENST00000292478 CLEC11AQ9Y240 323 aa14.23□□□□□ -0.13
PTCD1-201ENST00000292478 SFMBT2Q5VUG0 894 aa14.22□□□□□ -0.13
PTCD1-201ENST00000292478 FLAD1Q8NFF5 587 aa14.22□□□□□ -0.13
PTCD1-201ENST00000292478 A0A1W2PQ27 194 aa14.22□□□□□ -0.13
PTCD1-201ENST00000292478 A0A1W2PQ64 194 aa14.22□□□□□ -0.13
PTCD1-201ENST00000292478 A0A1W2PQD8 194 aa14.22□□□□□ -0.13
PTCD1-201ENST00000292478 ERCC5P28715 1186 aaPredicted RBP14.22□□□□□ -0.13
PTCD1-201ENST00000292478 ZBTB16Q05516 673 aa14.22□□□□□ -0.13
PTCD1-201ENST00000292478 CCDC6Q16204 474 aa14.22□□□□□ -0.13
PTCD1-201ENST00000292478 NKIRAS1Q9NYS0 192 aa14.22□□□□□ -0.13
PTCD1-201ENST00000292478 MAPK8IP1Q9UQF2 711 aa14.22□□□□□ -0.13
PTCD1-201ENST00000292478 ATP10DQ9P241 1426 aa14.22□□□□□ -0.13
PTCD1-201ENST00000292478 USP17L12C9JPN9 530 aa14.22□□□□□ -0.13
PTCD1-201ENST00000292478 USP17L21D6R901 530 aa14.22□□□□□ -0.13
PTCD1-201ENST00000292478 MXRA7P84157 204 aa14.22□□□□□ -0.13
PTCD1-201ENST00000292478 SETDB1Q15047 1291 aa14.22□□□□□ -0.13
PTCD1-201ENST00000292478 TTLL7Q6ZT98 887 aa14.22□□□□□ -0.13
PTCD1-201ENST00000292478 AFAP1L1Q8TED9 768 aa14.22□□□□□ -0.13
PTCD1-201ENST00000292478 CHURC1Q8WUH1 139 aa14.22□□□□□ -0.13
PTCD1-201ENST00000292478 MAGEF1Q9HAY2 307 aa14.22□□□□□ -0.13
PTCD1-201ENST00000292478 SWAP70Q9UH65 585 aa14.22□□□□□ -0.13
PTCD1-201ENST00000292478 PALD1Q9ULE6 856 aa14.22□□□□□ -0.13
PTCD1-201ENST00000292478 SLC8A3P57103 927 aa14.22□□□□□ -0.13
PTCD1-201ENST00000292478 ZMYM1Q5SVZ6 1142 aa14.22□□□□□ -0.13
PTCD1-201ENST00000292478 CARD6Q9BX69 1037 aa14.22□□□□□ -0.13
PTCD1-201ENST00000292478 ATP2C2O75185 946 aa14.21□□□□□ -0.13
PTCD1-201ENST00000292478 B4GALNT4Q76KP1 1039 aa14.21□□□□□ -0.13
PTCD1-201ENST00000292478 ARHGEF25Q86VW2 580 aa14.21□□□□□ -0.13
PTCD1-201ENST00000292478 MAIP1Q8WWC4 291 aa14.21□□□□□ -0.13
PTCD1-201ENST00000292478 MRFAP1L1Q96HT8 127 aa14.21□□□□□ -0.13
PTCD1-201ENST00000292478 USP28Q96RU2 1077 aa14.21□□□□□ -0.13
PTCD1-201ENST00000292478 ZHX1Q9UKY1 873 aaPredicted RBP14.21□□□□□ -0.13
PTCD1-201ENST00000292478 KDM6BO15054 1643 aa14.21□□□□□ -0.13
PTCD1-201ENST00000292478 TEKT1Q969V4 418 aa14.21□□□□□ -0.13
PTCD1-201ENST00000292478 EDC3Q96F86 508 aaKnown RBP14.21□□□□□ -0.13
PTCD1-201ENST00000292478 TLDC2A0PJX2 215 aa14.21□□□□□ -0.13
PTCD1-201ENST00000292478 FGAP02671 866 aa14.21□□□□□ -0.13
PTCD1-201ENST00000292478 MTX1Q13505 466 aa14.21□□□□□ -0.13
PTCD1-201ENST00000292478 TRPC3Q13507 836 aa14.21□□□□□ -0.13
PTCD1-201ENST00000292478 PNOCQ13519 176 aa14.21□□□□□ -0.13
PTCD1-201ENST00000292478 FAM98CQ17RN3 349 aaKnown RBP14.21□□□□□ -0.13
PTCD1-201ENST00000292478 MYCT1Q8N699 235 aa14.21□□□□□ -0.13
PTCD1-201ENST00000292478 XPO4Q9C0E2 1151 aaKnown RBP14.21□□□□□ -0.13
PTCD1-201ENST00000292478 KLHL30Q0D2K2 578 aa14.21□□□□□ -0.14
PTCD1-201ENST00000292478 RUFY4Q6ZNE9 571 aa14.21□□□□□ -0.14
PTCD1-201ENST00000292478 CCDC63Q8NA47 563 aa14.21□□□□□ -0.14
PTCD1-201ENST00000292478 CARD10Q9BWT7 1032 aa14.21□□□□□ -0.14
PTCD1-201ENST00000292478 PDE8BO95263 885 aa14.2□□□□□ -0.14
PTCD1-201ENST00000292478 CFAP221Q4G0U5 840 aa14.2□□□□□ -0.14
PTCD1-201ENST00000292478 CCDC25Q86WR0 208 aa14.2□□□□□ -0.14
PTCD1-201ENST00000292478 ZNF354CQ86Y25 554 aa14.2□□□□□ -0.14
PTCD1-201ENST00000292478 FAM169AQ9Y6X4 670 aa14.2□□□□□ -0.14
PTCD1-201ENST00000292478 SLFN12Q8IYM2 578 aa14.2□□□□□ -0.14
PTCD1-201ENST00000292478 PKD2L1Q9P0L9 805 aa14.2□□□□□ -0.14
PTCD1-201ENST00000292478 GTPBP6O43824 516 aaPredicted RBP14.2□□□□□ -0.14
PTCD1-201ENST00000292478 SCG2P13521 617 aa14.2□□□□□ -0.14
PTCD1-201ENST00000292478 PDIA3P30101 505 aaKnown RBP14.2□□□□□ -0.14
PTCD1-201ENST00000292478 INF2Q27J81 1249 aa14.2□□□□□ -0.14
PTCD1-201ENST00000292478 FAM47AQ5JRC9 791 aa14.2□□□□□ -0.14
PTCD1-201ENST00000292478 LARGE2Q8N3Y3 721 aa14.2□□□□□ -0.14
PTCD1-201ENST00000292478 KCNK9Q9NPC2 374 aa14.2□□□□□ -0.14
PTCD1-201ENST00000292478 CPSF1Q10570 1443 aaKnown RBP14.2□□□□□ -0.14
PTCD1-201ENST00000292478 TNKSO95271 1327 aa14.2□□□□□ -0.14
PTCD1-201ENST00000292478 H7C1D1 291 aa14.2□□□□□ -0.14
PTCD1-201ENST00000292478 ZEB2O60315 1214 aa14.2□□□□□ -0.14
PTCD1-201ENST00000292478 EXOC3O60645 756 aa14.2□□□□□ -0.14
PTCD1-201ENST00000292478 IL6STP40189 918 aaPredicted RBP14.2□□□□□ -0.14
PTCD1-201ENST00000292478 PAK2Q13177 524 aa14.2□□□□□ -0.14
PTCD1-201ENST00000292478 BRDTQ58F21 947 aaPredicted RBP14.2□□□□□ -0.14
PTCD1-201ENST00000292478 KRBA2Q6ZNG9 492 aa14.2□□□□□ -0.14
PTCD1-201ENST00000292478 DPH6Q7L8W6 267 aa14.2□□□□□ -0.14
PTCD1-201ENST00000292478 DYMQ7RTS9 669 aa14.2□□□□□ -0.14
PTCD1-201ENST00000292478 USP40Q9NVE5 1235 aa14.2□□□□□ -0.14
PTCD1-201ENST00000292478 RTEL1Q9NZ71 1219 aa14.2□□□□□ -0.14
PTCD1-201ENST00000292478 HECW2Q9P2P5 1572 aa14.2□□□□□ -0.14
PTCD1-201ENST00000292478 GOLGA5Q8TBA6 731 aa14.2□□□□□ -0.14
PTCD1-201ENST00000292478 MRPL44Q9H9J2 332 aaKnown RBP14.2□□□□□ -0.14
PTCD1-201ENST00000292478 LONP1P36776 959 aaKnown RBP14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms