RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 ZNF654Q8IZM8 581 aa12.75□□□□□ -0.37
USP53-201ENST00000274030 CHAMP1Q96JM3 812 aa12.75□□□□□ -0.37
USP53-201ENST00000274030 HAUS7Q99871 368 aa12.75□□□□□ -0.37
USP53-201ENST00000274030 TMEM63CQ9P1W3 806 aa12.75□□□□□ -0.37
USP53-201ENST00000274030 TTLL3Q9Y4R7 772 aa12.75□□□□□ -0.37
USP53-201ENST00000274030 SH3BP5O60239 455 aa12.74□□□□□ -0.37
USP53-201ENST00000274030 ATP5JP18859 108 aa12.74□□□□□ -0.37
USP53-201ENST00000274030 EXOC7Q9UPT5 735 aa12.74□□□□□ -0.37
USP53-201ENST00000274030 KDM2BQ8NHM5 1336 aa12.74□□□□□ -0.37
USP53-201ENST00000274030 TCIRG1Q13488 830 aa12.74□□□□□ -0.37
USP53-201ENST00000274030 NAP1L3Q99457 506 aaPredicted RBP12.74□□□□□ -0.37
USP53-201ENST00000274030 PALD1Q9ULE6 856 aa12.74□□□□□ -0.37
USP53-201ENST00000274030 MAST3O60307 1309 aa12.74□□□□□ -0.37
USP53-201ENST00000274030 ACTN4O43707 911 aaKnown RBP12.74□□□□□ -0.37
USP53-201ENST00000274030 ZBED4O75132 1171 aa12.74□□□□□ -0.37
USP53-201ENST00000274030 GSPT1P15170 499 aaKnown RBP12.74□□□□□ -0.37
USP53-201ENST00000274030 SCNN1DP51172 638 aa12.74□□□□□ -0.37
USP53-201ENST00000274030 INTS8Q75QN2 995 aaKnown RBP12.74□□□□□ -0.37
USP53-201ENST00000274030 CCDC117Q8IWD4 279 aaPredicted RBP12.74□□□□□ -0.37
USP53-201ENST00000274030 UBL4BQ8N7F7 174 aa12.74□□□□□ -0.37
USP53-201ENST00000274030 AZI2Q9H6S1 392 aa12.74□□□□□ -0.37
USP53-201ENST00000274030 BICRAQ9NZM4 1560 aa12.74□□□□□ -0.37
USP53-201ENST00000274030 EIF2AK4Q9P2K8 1649 aaKnown RBP12.74□□□□□ -0.37
USP53-201ENST00000274030 ZNF827Q17R98 1081 aa12.74□□□□□ -0.37
USP53-201ENST00000274030 LRRC24Q50LG9 513 aa12.74□□□□□ -0.37
USP53-201ENST00000274030 IL17REQ8NFR9 667 aa12.74□□□□□ -0.37
USP53-201ENST00000274030 CDCA7Q9BWT1 371 aaPredicted RBP12.74□□□□□ -0.37
USP53-201ENST00000274030 XPO4Q9C0E2 1151 aaKnown RBP12.74□□□□□ -0.37
USP53-201ENST00000274030 ANAPC4Q9UJX5 808 aa12.74□□□□□ -0.37
USP53-201ENST00000274030 TPD52P55327 224 aaPredicted RBP12.73□□□□□ -0.37
USP53-201ENST00000274030 CTSWP56202 376 aa12.73□□□□□ -0.37
USP53-201ENST00000274030 DLGAP5Q15398 846 aa12.73□□□□□ -0.37
USP53-201ENST00000274030 FMNL3Q8IVF7 1028 aa12.73□□□□□ -0.37
USP53-201ENST00000274030 EEF2KMTQ96G04 330 aa12.73□□□□□ -0.37
USP53-201ENST00000274030 CSRNP2Q9H175 543 aa12.73□□□□□ -0.37
USP53-201ENST00000274030 ITSN2Q9NZM3 1697 aa12.73□□□□□ -0.37
USP53-201ENST00000274030 OGFRQ9NZT2 677 aa12.73□□□□□ -0.37
USP53-201ENST00000274030 ABCC10Q5T3U5 1492 aa12.73□□□□□ -0.37
USP53-201ENST00000274030 PPIP5K2O43314 1243 aa12.73□□□□□ -0.37
USP53-201ENST00000274030 TECP42680 631 aa12.73□□□□□ -0.37
USP53-201ENST00000274030 CLUL1Q15846 466 aa12.73□□□□□ -0.37
USP53-201ENST00000274030 AFAP1L1Q8TED9 768 aa12.73□□□□□ -0.37
USP53-201ENST00000274030 GIGYF1O75420 1035 aaPredicted RBP12.73□□□□□ -0.37
USP53-201ENST00000274030 GAS8O95995 478 aa12.73□□□□□ -0.37
USP53-201ENST00000274030 MYSM1Q5VVJ2 828 aa12.73□□□□□ -0.37
USP53-201ENST00000274030 NDUFAB1O14561 156 aa12.73□□□□□ -0.37
USP53-201ENST00000274030 APBA3O96018 575 aa12.73□□□□□ -0.37
USP53-201ENST00000274030 TNNI1P19237 187 aa12.73□□□□□ -0.37
USP53-201ENST00000274030 DOK7Q18PE1 504 aa12.73□□□□□ -0.37
USP53-201ENST00000274030 KRBA2Q6ZNG9 492 aa12.73□□□□□ -0.37
USP53-201ENST00000274030 TMTC1Q8IUR5 882 aa12.73□□□□□ -0.37
USP53-201ENST00000274030 LRRC47Q8N1G4 583 aaKnown RBP12.73□□□□□ -0.37
USP53-201ENST00000274030 STIM2Q9P246 746 aa12.73□□□□□ -0.37
USP53-201ENST00000274030 COL17A1Q9UMD9 1497 aaPredicted RBP12.73□□□□□ -0.37
USP53-201ENST00000274030 NR1I2O75469 434 aa12.72□□□□□ -0.37
USP53-201ENST00000274030 TUBBP07437 444 aa12.72□□□□□ -0.37
USP53-201ENST00000274030 CYP2J2P51589 502 aa12.72□□□□□ -0.37
USP53-201ENST00000274030 C2CD5Q86YS7 1000 aa12.72□□□□□ -0.37
USP53-201ENST00000274030 NUP58Q9BVL2 599 aa12.72□□□□□ -0.37
USP53-201ENST00000274030 ALDH3A1P30838 453 aa12.72□□□□□ -0.37
USP53-201ENST00000274030 GPKOWQ92917 476 aaPredicted RBP eCLIP12.72□□□□□ -0.37
USP53-201ENST00000274030 USP28Q96RU2 1077 aa12.72□□□□□ -0.37
USP53-201ENST00000274030 DSCC1Q9BVC3 393 aa12.72□□□□□ -0.37
USP53-201ENST00000274030 GLT8D2Q9H1C3 349 aa12.72□□□□□ -0.37
USP53-201ENST00000274030 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.72□□□□□ -0.37
USP53-201ENST00000274030 PFKFB1P16118 471 aa12.72□□□□□ -0.37
USP53-201ENST00000274030 PKP1Q13835 747 aa12.72□□□□□ -0.37
USP53-201ENST00000274030 CCDC105Q8IYK2 499 aa12.72□□□□□ -0.37
USP53-201ENST00000274030 TESPA1A2RU30 521 aaPredicted RBP12.72□□□□□ -0.37
USP53-201ENST00000274030 CRCPO75575 148 aa12.72□□□□□ -0.37
USP53-201ENST00000274030 ABCB4P21439 1286 aa12.72□□□□□ -0.37
USP53-201ENST00000274030 KIAA0825Q8IV33 1275 aa12.72□□□□□ -0.37
USP53-201ENST00000274030 PFDN4Q9NQP4 134 aa12.72□□□□□ -0.37
USP53-201ENST00000274030 TPCN1Q9ULQ1 816 aa12.72□□□□□ -0.37
USP53-201ENST00000274030 ARHGAP6O43182 974 aa12.72□□□□□ -0.37
USP53-201ENST00000274030 BRDTQ58F21 947 aaPredicted RBP12.72□□□□□ -0.37
USP53-201ENST00000274030 SFMBT2Q5VUG0 894 aa12.72□□□□□ -0.37
USP53-201ENST00000274030 CASC4Q6P4E1 433 aa12.72□□□□□ -0.37
USP53-201ENST00000274030 IFNL3Q8IZI9 196 aa12.72□□□□□ -0.37
USP53-201ENST00000274030 GLG1Q92896 1179 aa12.72□□□□□ -0.37
USP53-201ENST00000274030 DESI2Q9BSY9 194 aa12.72□□□□□ -0.37
USP53-201ENST00000274030 GOLGA6CA6NDK9 693 aa12.71□□□□□ -0.37
USP53-201ENST00000274030 GOLGA6DP0CG33 693 aa12.71□□□□□ -0.37
USP53-201ENST00000274030 BSPRYQ5W0U4 402 aa12.71□□□□□ -0.37
USP53-201ENST00000274030 PEX26Q7Z412 305 aa12.71□□□□□ -0.37
USP53-201ENST00000274030 PAGR1Q9BTK6 254 aa12.71□□□□□ -0.37
USP53-201ENST00000274030 GOLGA6AQ9NYA3 693 aa12.71□□□□□ -0.37
USP53-201ENST00000274030 GAS7O60861 476 aa12.71□□□□□ -0.37
USP53-201ENST00000274030 PRR16Q569H4 304 aa12.71□□□□□ -0.37
USP53-201ENST00000274030 IFT20Q8IY31 132 aa12.71□□□□□ -0.37
USP53-201ENST00000274030 ST7Q9NRC1 585 aa12.71□□□□□ -0.37
USP53-201ENST00000274030 SLAIN2Q9P270 581 aa12.71□□□□□ -0.37
USP53-201ENST00000274030 USP21Q9UK80 565 aa12.71□□□□□ -0.37
USP53-201ENST00000274030 TSC1Q92574 1164 aa12.71□□□□□ -0.37
USP53-201ENST00000274030 RPS6KA1Q15418 735 aa12.71□□□□□ -0.38
USP53-201ENST00000274030 TTC31Q49AM3 519 aaPredicted RBP12.71□□□□□ -0.38
USP53-201ENST00000274030 CCT6BQ92526 530 aa12.71□□□□□ -0.38
USP53-201ENST00000274030 CLIC6Q96NY7 704 aa12.71□□□□□ -0.38
USP53-201ENST00000274030 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.71□□□□□ -0.38
USP53-201ENST00000274030 HSPD1P10809 573 aaKnown RBP12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms