RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 KRT25Q7Z3Z0 450 aa13.23□□□□□ -0.29
VPS4A-201ENST00000254950 KCNB2Q92953 911 aa13.23□□□□□ -0.29
VPS4A-201ENST00000254950 ZNF174Q15697 407 aa13.22□□□□□ -0.29
VPS4A-201ENST00000254950 GPATCH4Q5T3I0 446 aaKnown RBP13.22□□□□□ -0.29
VPS4A-201ENST00000254950 SLC44A5Q8NCS7 719 aa13.22□□□□□ -0.29
VPS4A-201ENST00000254950 SMARCE1Q969G3 411 aa13.22□□□□□ -0.29
VPS4A-201ENST00000254950 BIN1O00499 593 aa13.22□□□□□ -0.29
VPS4A-201ENST00000254950 ASPRV1Q53RT3 343 aa13.22□□□□□ -0.29
VPS4A-201ENST00000254950 TTC38Q5R3I4 469 aa13.22□□□□□ -0.29
VPS4A-201ENST00000254950 HHIPL2Q6UWX4 724 aa13.22□□□□□ -0.29
VPS4A-201ENST00000254950 NOSTRINQ8IVI9 506 aa13.22□□□□□ -0.29
VPS4A-201ENST00000254950 CHURC1Q8WUH1 139 aa13.22□□□□□ -0.29
VPS4A-201ENST00000254950 TAF6LQ9Y6J9 622 aa13.22□□□□□ -0.29
VPS4A-201ENST00000254950 ADCY7P51828 1080 aa13.22□□□□□ -0.29
VPS4A-201ENST00000254950 PPP4CP60510 307 aa13.22□□□□□ -0.29
VPS4A-201ENST00000254950 AMPD3Q01432 767 aa13.22□□□□□ -0.29
VPS4A-201ENST00000254950 LETM2Q2VYF4 491 aa13.22□□□□□ -0.29
VPS4A-201ENST00000254950 DTHD1Q6ZMT9 781 aa13.22□□□□□ -0.29
VPS4A-201ENST00000254950 SGMS1Q86VZ5 419 aa13.22□□□□□ -0.29
VPS4A-201ENST00000254950 LY9Q9HBG7 655 aa13.22□□□□□ -0.29
VPS4A-201ENST00000254950 ZNF165P49910 485 aa13.21□□□□□ -0.29
VPS4A-201ENST00000254950 RCAN1P53805 252 aa13.21□□□□□ -0.29
VPS4A-201ENST00000254950 NONOQ15233 471 aaKnown RBP eCLIP13.21□□□□□ -0.29
VPS4A-201ENST00000254950 CRY2Q49AN0 593 aa13.21□□□□□ -0.29
VPS4A-201ENST00000254950 NAP1L4Q99733 375 aaKnown RBP13.21□□□□□ -0.29
VPS4A-201ENST00000254950 FRMPD2Q68DX3 1309 aaPredicted RBP13.21□□□□□ -0.29
VPS4A-201ENST00000254950 GPR75-ASB3A0A0A6YYF3 556 aa13.21□□□□□ -0.29
VPS4A-201ENST00000254950 FAM160A1Q05DH4 1040 aa13.21□□□□□ -0.29
VPS4A-201ENST00000254950 ENAHQ8N8S7 591 aaPredicted RBP13.21□□□□□ -0.29
VPS4A-201ENST00000254950 TMOD4Q9NZQ9 345 aa13.21□□□□□ -0.29
VPS4A-201ENST00000254950 BTBD18B2RXH4 712 aa13.21□□□□□ -0.3
VPS4A-201ENST00000254950 TGFB2P61812 414 aa13.21□□□□□ -0.3
VPS4A-201ENST00000254950 JAKMIP3Q5VZ66 844 aa13.21□□□□□ -0.3
VPS4A-201ENST00000254950 REXO1Q8N1G1 1221 aaKnown RBP13.21□□□□□ -0.3
VPS4A-201ENST00000254950 AKT1S1Q96B36 256 aa13.21□□□□□ -0.3
VPS4A-201ENST00000254950 USP28Q96RU2 1077 aa13.21□□□□□ -0.3
VPS4A-201ENST00000254950 PRKG1Q13976 671 aa13.2□□□□□ -0.3
VPS4A-201ENST00000254950 SULF1Q8IWU6 871 aa13.2□□□□□ -0.3
VPS4A-201ENST00000254950 ERMNQ8TAM6 284 aa13.2□□□□□ -0.3
VPS4A-201ENST00000254950 NAP1L5Q96NT1 182 aaPredicted RBP13.2□□□□□ -0.3
VPS4A-201ENST00000254950 TANGO6Q9C0B7 1094 aa13.2□□□□□ -0.3
VPS4A-201ENST00000254950 CUTAO60888 179 aa13.2□□□□□ -0.3
VPS4A-201ENST00000254950 IL1R1P14778 569 aa13.2□□□□□ -0.3
VPS4A-201ENST00000254950 UBA5Q9GZZ9 404 aa13.2□□□□□ -0.3
VPS4A-201ENST00000254950 A0A1B0GVL5 298 aa13.2□□□□□ -0.3
VPS4A-201ENST00000254950 SMCO2A6NFE2 343 aa13.2□□□□□ -0.3
VPS4A-201ENST00000254950 GDF11O95390 407 aa13.2□□□□□ -0.3
VPS4A-201ENST00000254950 KLHL10Q6JEL2 608 aa13.2□□□□□ -0.3
VPS4A-201ENST00000254950 BLIDQ8IZY5 108 aa13.2□□□□□ -0.3
VPS4A-201ENST00000254950 STAT6P42226 847 aa13.2□□□□□ -0.3
VPS4A-201ENST00000254950 GALNT17Q6IS24 598 aa13.2□□□□□ -0.3
VPS4A-201ENST00000254950 RIOK1Q9BRS2 568 aaKnown RBP13.2□□□□□ -0.3
VPS4A-201ENST00000254950 CBFA2T2O43439 604 aa13.19□□□□□ -0.3
VPS4A-201ENST00000254950 GADD45BO75293 160 aaPredicted RBP13.19□□□□□ -0.3
VPS4A-201ENST00000254950 IPO7O95373 1038 aaKnown RBP13.19□□□□□ -0.3
VPS4A-201ENST00000254950 DCPSQ96C86 337 aaKnown RBP13.19□□□□□ -0.3
VPS4A-201ENST00000254950 MXD3Q9BW11 206 aa13.19□□□□□ -0.3
VPS4A-201ENST00000254950 AS3MTQ9HBK9 375 aa13.19□□□□□ -0.3
VPS4A-201ENST00000254950 ELP1O95163 1332 aa13.19□□□□□ -0.3
VPS4A-201ENST00000254950 FLT1P17948 1338 aa13.19□□□□□ -0.3
VPS4A-201ENST00000254950 AFDNP55196 1824 aaKnown RBP13.19□□□□□ -0.3
VPS4A-201ENST00000254950 VWA3AA6NCI4 1184 aa13.19□□□□□ -0.3
VPS4A-201ENST00000254950 EPS15P42566 896 aa13.19□□□□□ -0.3
VPS4A-201ENST00000254950 HDLBPQ00341 1268 aaKnown RBP13.19□□□□□ -0.3
VPS4A-201ENST00000254950 TMEM179Q6ZVK1 233 aa13.19□□□□□ -0.3
VPS4A-201ENST00000254950 DHX58Q96C10 678 aa13.19□□□□□ -0.3
VPS4A-201ENST00000254950 MARF1Q9Y4F3 1742 aaKnown RBP13.19□□□□□ -0.3
VPS4A-201ENST00000254950 SALL1Q9NSC2 1324 aa13.19□□□□□ -0.3
VPS4A-201ENST00000254950 TCRBV5S4A2TA0A5A2 114 aa13.19□□□□□ -0.3
VPS4A-201ENST00000254950 PRPF3O43395 683 aaKnown RBP13.19□□□□□ -0.3
VPS4A-201ENST00000254950 C15orf52Q6ZUT6 534 aaKnown RBP13.19□□□□□ -0.3
VPS4A-201ENST00000254950 NEDD1Q8NHV4 660 aa13.19□□□□□ -0.3
VPS4A-201ENST00000254950 KRT79Q5XKE5 535 aa13.18□□□□□ -0.3
VPS4A-201ENST00000254950 RSBN1LQ6PCB5 846 aaPredicted RBP13.18□□□□□ -0.3
VPS4A-201ENST00000254950 SPC24Q8NBT2 197 aa13.18□□□□□ -0.3
VPS4A-201ENST00000254950 GPKOWQ92917 476 aaPredicted RBP eCLIP13.18□□□□□ -0.3
VPS4A-201ENST00000254950 TMEM47Q9BQJ4 181 aa13.18□□□□□ -0.3
VPS4A-201ENST00000254950 LRRC27Q9C0I9 530 aa13.18□□□□□ -0.3
VPS4A-201ENST00000254950 CSADQ9Y600 493 aa13.18□□□□□ -0.3
VPS4A-201ENST00000254950 DOT1LQ8TEK3 1739 aa13.18□□□□□ -0.3
VPS4A-201ENST00000254950 FAM205AQ6ZU69 1335 aa13.18□□□□□ -0.3
VPS4A-201ENST00000254950 WTIPA6NIX2 430 aaPredicted RBP13.18□□□□□ -0.3
VPS4A-201ENST00000254950 IDEP14735 1019 aa13.18□□□□□ -0.3
VPS4A-201ENST00000254950 AFMP43652 599 aa13.18□□□□□ -0.3
VPS4A-201ENST00000254950 PLS1Q14651 629 aa13.18□□□□□ -0.3
VPS4A-201ENST00000254950 FCHSD1Q86WN1 690 aa13.18□□□□□ -0.3
VPS4A-201ENST00000254950 CHAMP1Q96JM3 812 aa13.18□□□□□ -0.3
VPS4A-201ENST00000254950 OSBPL5Q9H0X9 879 aaPredicted RBP13.18□□□□□ -0.3
VPS4A-201ENST00000254950 XIRP1Q702N8 1843 aaKnown RBP13.18□□□□□ -0.3
VPS4A-201ENST00000254950 PLCH1Q4KWH8 1693 aa13.18□□□□□ -0.3
VPS4A-201ENST00000254950 EAPPQ56P03 285 aaPredicted RBP13.18□□□□□ -0.3
VPS4A-201ENST00000254950 RRAGBQ5VZM2 374 aa13.18□□□□□ -0.3
VPS4A-201ENST00000254950 USP17L2Q6R6M4 530 aa13.18□□□□□ -0.3
VPS4A-201ENST00000254950 TMTC3Q6ZXV5 915 aa13.18□□□□□ -0.3
VPS4A-201ENST00000254950 PROM2Q8N271 834 aa13.18□□□□□ -0.3
VPS4A-201ENST00000254950 IQUBQ8NA54 791 aa13.18□□□□□ -0.3
VPS4A-201ENST00000254950 FOXP1Q9H334 677 aaPredicted RBP13.18□□□□□ -0.3
VPS4A-201ENST00000254950 ANAPC4Q9UJX5 808 aa13.18□□□□□ -0.3
VPS4A-201ENST00000254950 COL22A1Q8NFW1 1626 aaPredicted RBP13.17□□□□□ -0.3
VPS4A-201ENST00000254950 PPP1R12BO60237 982 aaPredicted RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms