RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 PTCH2Q9Y6C5 1203 aa27.52■■■□□ 2
LSM4-201ENST00000252816 GNAT2P19087 354 aa27.51■■□□□ 1.99
LSM4-201ENST00000252816 SOX10P56693 466 aa27.51■■□□□ 1.99
LSM4-201ENST00000252816 ZYXQ15942 572 aaKnown RBP27.51■■□□□ 1.99
LSM4-201ENST00000252816 ANKRD13CQ8N6S4 541 aa27.51■■□□□ 1.99
LSM4-201ENST00000252816 FEZ1Q99689 392 aa27.51■■□□□ 1.99
LSM4-201ENST00000252816 KIAA1683Q9H0B3 1180 aa27.51■■□□□ 1.99
LSM4-201ENST00000252816 GNRH1P01148 92 aa27.5■■□□□ 1.99
LSM4-201ENST00000252816 TMEM179Q6ZVK1 233 aa27.5■■□□□ 1.99
LSM4-201ENST00000252816 C12orf42Q96LP6 360 aa27.5■■□□□ 1.99
LSM4-201ENST00000252816 PATL2C9JE40 543 aaKnown RBP27.49■■□□□ 1.99
LSM4-201ENST00000252816 FMNL1O95466 1100 aaPredicted RBP27.49■■□□□ 1.99
LSM4-201ENST00000252816 P2RX7Q99572 595 aaKnown RBP27.49■■□□□ 1.99
LSM4-201ENST00000252816 A0A1W2PRG0 241 aa27.48■■□□□ 1.99
LSM4-201ENST00000252816 MINDY4BA8MYZ0 360 aa27.48■■□□□ 1.99
LSM4-201ENST00000252816 APPP05067 770 aa27.48■■□□□ 1.99
LSM4-201ENST00000252816 GCLCP48506 637 aaPredicted RBP27.48■■□□□ 1.99
LSM4-201ENST00000252816 IRX3P78415 501 aaPredicted RBP27.48■■□□□ 1.99
LSM4-201ENST00000252816 FAM110CQ1W6H9 321 aa27.48■■□□□ 1.99
LSM4-201ENST00000252816 CCDC129Q6ZRS4 1044 aa27.48■■□□□ 1.99
LSM4-201ENST00000252816 CLEC10AQ8IUN9 316 aa27.48■■□□□ 1.99
LSM4-201ENST00000252816 CCDC17Q96LX7 622 aa27.48■■□□□ 1.99
LSM4-201ENST00000252816 OSBPL3Q9H4L5 887 aa27.48■■□□□ 1.99
LSM4-201ENST00000252816 SRRDQ9UH36 339 aa27.48■■□□□ 1.99
LSM4-201ENST00000252816 TDO2P48775 406 aa27.47■■□□□ 1.99
LSM4-201ENST00000252816 RGS19P49795 217 aa27.47■■□□□ 1.99
LSM4-201ENST00000252816 USP14P54578 494 aa27.47■■□□□ 1.99
LSM4-201ENST00000252816 FCGRTP55899 365 aa27.47■■□□□ 1.99
LSM4-201ENST00000252816 SIAH1Q8IUQ4 282 aa27.47■■□□□ 1.99
LSM4-201ENST00000252816 IFNL3Q8IZI9 196 aa27.47■■□□□ 1.99
LSM4-201ENST00000252816 ARMC5Q96C12 935 aa27.47■■□□□ 1.99
LSM4-201ENST00000252816 MYH8P13535 1937 aa27.46■■□□□ 1.99
LSM4-201ENST00000252816 FOXP2O15409 715 aa27.46■■□□□ 1.99
LSM4-201ENST00000252816 STK11IPQ8N1F8 1099 aa27.46■■□□□ 1.99
LSM4-201ENST00000252816 ROBO3Q96MS0 1386 aa27.46■■□□□ 1.99
LSM4-201ENST00000252816 TRIM6-TRIM34B2RNG4 842 aa27.45■■□□□ 1.98
LSM4-201ENST00000252816 VCAM1P19320 739 aa27.45■■□□□ 1.98
LSM4-201ENST00000252816 PRMT2P55345 433 aa27.45■■□□□ 1.98
LSM4-201ENST00000252816 HERVK_113P62684 666 aa27.45■■□□□ 1.98
LSM4-201ENST00000252816 PEX10O60683 326 aa27.44■■□□□ 1.98
LSM4-201ENST00000252816 HOXD10P28358 340 aa27.44■■□□□ 1.98
LSM4-201ENST00000252816 POTEEQ6S8J3 1075 aa27.44■■□□□ 1.98
LSM4-201ENST00000252816 FAM227BQ96M60 508 aa27.44■■□□□ 1.98
LSM4-201ENST00000252816 MGAMO43451 1857 aa27.44■■□□□ 1.98
LSM4-201ENST00000252816 MYPNQ86TC9 1320 aa27.43■■□□□ 1.98
LSM4-201ENST00000252816 A0A0D9SFI3 127 aa27.43■■□□□ 1.98
LSM4-201ENST00000252816 RASA1P20936 1047 aa27.43■■□□□ 1.98
LSM4-201ENST00000252816 ICA1Q05084 483 aa27.43■■□□□ 1.98
LSM4-201ENST00000252816 PRKCZQ05513 592 aa27.43■■□□□ 1.98
LSM4-201ENST00000252816 SLC9C1Q4G0N8 1177 aa27.43■■□□□ 1.98
LSM4-201ENST00000252816 RILPL2Q969X0 211 aa27.43■■□□□ 1.98
LSM4-201ENST00000252816 GNL3Q9BVP2 549 aaKnown RBP eCLIP27.43■■□□□ 1.98
LSM4-201ENST00000252816 NACAP1Q9BZK3 213 aa27.43■■□□□ 1.98
LSM4-201ENST00000252816 TXNRD2Q9NNW7 524 aa27.43■■□□□ 1.98
LSM4-201ENST00000252816 HELLSQ9NRZ9 838 aa27.43■■□□□ 1.98
LSM4-201ENST00000252816 MORF4L1Q9UBU8 362 aa27.43■■□□□ 1.98
LSM4-201ENST00000252816 GABRQQ9UN88 632 aa27.43■■□□□ 1.98
LSM4-201ENST00000252816 USP17L15C9J2P7 530 aa27.42■■□□□ 1.98
LSM4-201ENST00000252816 USP17L13C9JLJ4 530 aa27.42■■□□□ 1.98
LSM4-201ENST00000252816 USP17L11C9JVI0 530 aa27.42■■□□□ 1.98
LSM4-201ENST00000252816 USP17L18D6R9N7 530 aa27.42■■□□□ 1.98
LSM4-201ENST00000252816 USP17L22D6RA61 530 aa27.42■■□□□ 1.98
LSM4-201ENST00000252816 USP17L17D6RBQ6 530 aa27.42■■□□□ 1.98
LSM4-201ENST00000252816 USP17L19D6RCP7 530 aa27.42■■□□□ 1.98
LSM4-201ENST00000252816 USP17L20D6RJB6 530 aa27.42■■□□□ 1.98
LSM4-201ENST00000252816 PDE4AP27815 886 aa27.42■■□□□ 1.98
LSM4-201ENST00000252816 USP17L24Q0WX57 530 aa27.42■■□□□ 1.98
LSM4-201ENST00000252816 KIAA1755Q5JYT7 1200 aa27.42■■□□□ 1.98
LSM4-201ENST00000252816 VPS53Q5VIR6 699 aa27.42■■□□□ 1.98
LSM4-201ENST00000252816 CATSPERGQ6ZRH7 1159 aa27.42■■□□□ 1.98
LSM4-201ENST00000252816 TICAM2Q86XR7 235 aa27.42■■□□□ 1.98
LSM4-201ENST00000252816 SH3TC2Q8TF17 1288 aa27.41■■□□□ 1.98
LSM4-201ENST00000252816 ZNF333Q96JL9 665 aa27.41■■□□□ 1.98
LSM4-201ENST00000252816 NAPBQ9H115 298 aa27.41■■□□□ 1.98
LSM4-201ENST00000252816 RPAP3Q9H6T3 665 aaPredicted RBP27.41■■□□□ 1.98
LSM4-201ENST00000252816 MKNK2Q9HBH9 465 aa27.41■■□□□ 1.98
LSM4-201ENST00000252816 RBPJLQ9UBG7 517 aa27.41■■□□□ 1.98
LSM4-201ENST00000252816 TNPO2O14787 897 aaKnown RBP27.4■■□□□ 1.98
LSM4-201ENST00000252816 NMIQ13287 307 aaPredicted RBP27.4■■□□□ 1.98
LSM4-201ENST00000252816 ARHGEF10LQ9HCE6 1279 aa27.4■■□□□ 1.98
LSM4-201ENST00000252816 TMX2Q9Y320 296 aa27.4■■□□□ 1.98
LSM4-201ENST00000252816 PRDM1O75626 825 aa27.39■■□□□ 1.98
LSM4-201ENST00000252816 EEF2P13639 858 aaKnown RBP27.39■■□□□ 1.98
LSM4-201ENST00000252816 MCMDC2Q4G0Z9 681 aa27.39■■□□□ 1.98
LSM4-201ENST00000252816 RAET1EQ8TD07 263 aa27.39■■□□□ 1.98
LSM4-201ENST00000252816 KANSL2Q9H9L4 492 aa27.39■■□□□ 1.98
LSM4-201ENST00000252816 FLT3LGP49771 235 aa27.38■■□□□ 1.97
LSM4-201ENST00000252816 PPARAQ07869 468 aa27.38■■□□□ 1.97
LSM4-201ENST00000252816 Q3C1V9 767 aa27.38■■□□□ 1.97
LSM4-201ENST00000252816 NBPF11Q86T75 865 aa27.38■■□□□ 1.97
LSM4-201ENST00000252816 GPRC5AQ8NFJ5 357 aa27.38■■□□□ 1.97
LSM4-201ENST00000252816 BRCA2P51587 3418 aa27.38■■□□□ 1.97
LSM4-201ENST00000252816 SDSP20132 328 aa27.37■■□□□ 1.97
LSM4-201ENST00000252816 ATP2B2Q01814 1243 aa27.37■■□□□ 1.97
LSM4-201ENST00000252816 ZNF589Q86UQ0 364 aaPredicted RBP27.37■■□□□ 1.97
LSM4-201ENST00000252816 GTF3C2Q8WUA4 911 aaPredicted RBP27.37■■□□□ 1.97
LSM4-201ENST00000252816 PAGR1Q9BTK6 254 aa27.37■■□□□ 1.97
LSM4-201ENST00000252816 VCPKMTQ9H867 229 aa27.37■■□□□ 1.97
LSM4-201ENST00000252816 GREB1LQ9C091 1923 aaPredicted RBP27.37■■□□□ 1.97
LSM4-201ENST00000252816 DOCK3Q8IZD9 2030 aa27.36■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms