RNA–Protein interactions for RNA: ENST00000233468.4

SF3B6-201, Transcript of splicing factor 3b subunit 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B6, Length 770 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B6-201ENST00000233468 CAP2P40123 477 aa13.46□□□□□ -0.25
SF3B6-201ENST00000233468 SNAPC2Q13487 334 aa13.46□□□□□ -0.25
SF3B6-201ENST00000233468 TAF1CQ15572 869 aaPredicted RBP13.46□□□□□ -0.25
SF3B6-201ENST00000233468 SBK1Q52WX2 424 aa13.46□□□□□ -0.25
SF3B6-201ENST00000233468 NAPBQ9H115 298 aa13.46□□□□□ -0.25
SF3B6-201ENST00000233468 GSG1L2A8MUP6 293 aa13.45□□□□□ -0.26
SF3B6-201ENST00000233468 CXCL11O14625 94 aa13.45□□□□□ -0.26
SF3B6-201ENST00000233468 MYCP01106 439 aaPredicted RBP13.45□□□□□ -0.26
SF3B6-201ENST00000233468 PLCD1P51178 756 aa13.45□□□□□ -0.26
SF3B6-201ENST00000233468 NMIQ13287 307 aaPredicted RBP13.45□□□□□ -0.26
SF3B6-201ENST00000233468 SLC4A8Q2Y0W8 1093 aa13.45□□□□□ -0.26
SF3B6-201ENST00000233468 CERKLQ49MI3 558 aaPredicted RBP13.45□□□□□ -0.26
SF3B6-201ENST00000233468 C12orf60Q5U649 245 aa13.45□□□□□ -0.26
SF3B6-201ENST00000233468 CTR9Q6PD62 1173 aa13.45□□□□□ -0.26
SF3B6-201ENST00000233468 IFNL3Q8IZI9 196 aa13.45□□□□□ -0.26
SF3B6-201ENST00000233468 SEC62Q99442 399 aaKnown RBP13.45□□□□□ -0.26
SF3B6-201ENST00000233468 ARHGAP39Q9C0H5 1083 aa13.45□□□□□ -0.26
SF3B6-201ENST00000233468 PCDH10Q9P2E7 1040 aa13.45□□□□□ -0.26
SF3B6-201ENST00000233468 PTCH2Q9Y6C5 1203 aa13.45□□□□□ -0.26
SF3B6-201ENST00000233468 ZHX2Q9Y6X8 837 aa13.45□□□□□ -0.26
SF3B6-201ENST00000233468 DOCK2Q92608 1830 aa13.45□□□□□ -0.26
SF3B6-201ENST00000233468 FAM196BA6NMK8 535 aa13.44□□□□□ -0.26
SF3B6-201ENST00000233468 USP17L5A8MUK1 530 aa13.44□□□□□ -0.26
SF3B6-201ENST00000233468 GSPT1P15170 499 aaKnown RBP13.44□□□□□ -0.26
SF3B6-201ENST00000233468 PTPRAP18433 802 aa13.44□□□□□ -0.26
SF3B6-201ENST00000233468 LHX8Q68G74 356 aa13.44□□□□□ -0.26
SF3B6-201ENST00000233468 TATDN1Q6P1N9 297 aa13.44□□□□□ -0.26
SF3B6-201ENST00000233468 CASC1Q6TDU7 716 aa13.44□□□□□ -0.26
SF3B6-201ENST00000233468 CWC27Q6UX04 472 aaKnown RBP13.44□□□□□ -0.26
SF3B6-201ENST00000233468 ARMC5Q96C12 935 aa13.44□□□□□ -0.26
SF3B6-201ENST00000233468 CCDC17Q96LX7 622 aa13.44□□□□□ -0.26
SF3B6-201ENST00000233468 FAM227BQ96M60 508 aa13.44□□□□□ -0.26
SF3B6-201ENST00000233468 CCDC171Q6TFL3 1326 aa13.43□□□□□ -0.26
SF3B6-201ENST00000233468 RAD50Q92878 1312 aa13.43□□□□□ -0.26
SF3B6-201ENST00000233468 A0A0D9SFI3 127 aa13.43□□□□□ -0.26
SF3B6-201ENST00000233468 MINDY4BA8MYZ0 360 aa13.43□□□□□ -0.26
SF3B6-201ENST00000233468 BTBD19C9JJ37 291 aa13.43□□□□□ -0.26
SF3B6-201ENST00000233468 RIOK3O14730 519 aaKnown RBP13.43□□□□□ -0.26
SF3B6-201ENST00000233468 IRF6O14896 467 aa13.43□□□□□ -0.26
SF3B6-201ENST00000233468 GABPAQ06546 454 aa13.43□□□□□ -0.26
SF3B6-201ENST00000233468 PDE4BQ07343 736 aa13.43□□□□□ -0.26
SF3B6-201ENST00000233468 ALX1Q15699 326 aa13.43□□□□□ -0.26
SF3B6-201ENST00000233468 ABCB5Q2M3G0 1257 aa13.43□□□□□ -0.26
SF3B6-201ENST00000233468 BMP2KLQ5H9B9 411 aa13.43□□□□□ -0.26
SF3B6-201ENST00000233468 FASTKD5Q7L8L6 764 aaKnown RBP13.43□□□□□ -0.26
SF3B6-201ENST00000233468 MKNK2Q9HBH9 465 aa13.43□□□□□ -0.26
SF3B6-201ENST00000233468 ZFYVE28Q9HCC9 887 aa13.43□□□□□ -0.26
SF3B6-201ENST00000233468 KCNH4Q9UQ05 1017 aa13.43□□□□□ -0.26
SF3B6-201ENST00000233468 CEP290O15078 2479 aa13.42□□□□□ -0.26
SF3B6-201ENST00000233468 C16orf86Q6ZW13 317 aa13.42□□□□□ -0.26
SF3B6-201ENST00000233468 ZNF280CQ8ND82 737 aa13.42□□□□□ -0.26
SF3B6-201ENST00000233468 ZNF333Q96JL9 665 aa13.42□□□□□ -0.26
SF3B6-201ENST00000233468 DNAJC18Q9H819 358 aa13.42□□□□□ -0.26
SF3B6-201ENST00000233468 ZCCHC17Q9NP64 241 aaKnown RBP13.42□□□□□ -0.26
SF3B6-201ENST00000233468 ZBTB21Q9ULJ3 1066 aa13.42□□□□□ -0.26
SF3B6-201ENST00000233468 MPHOSPH10O00566 681 aaKnown RBP13.41□□□□□ -0.26
SF3B6-201ENST00000233468 GDF11O95390 407 aa13.41□□□□□ -0.26
SF3B6-201ENST00000233468 CYP2D6P10635 497 aa13.41□□□□□ -0.26
SF3B6-201ENST00000233468 CTGFP29279 349 aa13.41□□□□□ -0.26
SF3B6-201ENST00000233468 SHMT1P34896 483 aa13.41□□□□□ -0.26
SF3B6-201ENST00000233468 CDK8P49336 464 aa13.41□□□□□ -0.26
SF3B6-201ENST00000233468 CCDC129Q6ZRS4 1044 aa13.41□□□□□ -0.26
SF3B6-201ENST00000233468 TMEM179Q6ZVK1 233 aa13.41□□□□□ -0.26
SF3B6-201ENST00000233468 SH3TC2Q8TF17 1288 aa13.41□□□□□ -0.26
SF3B6-201ENST00000233468 RNF25Q96BH1 459 aaPredicted RBP13.41□□□□□ -0.26
SF3B6-201ENST00000233468 WDR18Q9BV38 432 aa13.41□□□□□ -0.26
SF3B6-201ENST00000233468 CTNNA3Q9UI47 895 aa13.41□□□□□ -0.26
SF3B6-201ENST00000233468 AFG3L2Q9Y4W6 797 aa13.41□□□□□ -0.26
SF3B6-201ENST00000233468 ZMYM6O95789 1325 aa13.4□□□□□ -0.26
SF3B6-201ENST00000233468 TRIM75PA6NK02 468 aa13.4□□□□□ -0.26
SF3B6-201ENST00000233468 C19orf81C9J6K1 198 aa13.4□□□□□ -0.26
SF3B6-201ENST00000233468 TLR2O60603 784 aa13.4□□□□□ -0.26
SF3B6-201ENST00000233468 GH2P01242 217 aa13.4□□□□□ -0.26
SF3B6-201ENST00000233468 SLURP2P0DP57 97 aa13.4□□□□□ -0.26
SF3B6-201ENST00000233468 HSPD1P10809 573 aaKnown RBP13.4□□□□□ -0.26
SF3B6-201ENST00000233468 CHMLP26374 656 aa13.4□□□□□ -0.26
SF3B6-201ENST00000233468 NT5C2P49902 561 aa13.4□□□□□ -0.26
SF3B6-201ENST00000233468 USP14P54578 494 aa13.4□□□□□ -0.26
SF3B6-201ENST00000233468 PPARAQ07869 468 aa13.4□□□□□ -0.26
SF3B6-201ENST00000233468 PABPC4Q13310 644 aaKnown RBP eCLIP13.4□□□□□ -0.261e-34■■□□□ 13.6
SF3B6-201ENST00000233468 RAB3GAP1Q15042 981 aa13.4□□□□□ -0.26
SF3B6-201ENST00000233468 SLC9C1Q4G0N8 1177 aa13.4□□□□□ -0.26
SF3B6-201ENST00000233468 HABP4Q5JVS0 413 aaKnown RBP13.4□□□□□ -0.26
SF3B6-201ENST00000233468 PPP4R3BQ5MIZ7 849 aa13.4□□□□□ -0.26
SF3B6-201ENST00000233468 ZNF444Q8N0Y2 327 aaPredicted RBP13.4□□□□□ -0.26
SF3B6-201ENST00000233468 DYNLL2Q96FJ2 89 aa13.4□□□□□ -0.26
SF3B6-201ENST00000233468 SH2D4AQ9H788 454 aa13.4□□□□□ -0.26
SF3B6-201ENST00000233468 EPB41L4AQ9HCS5 686 aaPredicted RBP13.4□□□□□ -0.26
SF3B6-201ENST00000233468 TMOD4Q9NZQ9 345 aa13.4□□□□□ -0.26
SF3B6-201ENST00000233468 MGAMO43451 1857 aa13.4□□□□□ -0.26
SF3B6-201ENST00000233468 CYP2D7A0A087X1C5 515 aa13.39□□□□□ -0.27
SF3B6-201ENST00000233468 A0A0G2JLL6 359 aaPredicted RBP13.39□□□□□ -0.27
SF3B6-201ENST00000233468 USP17L10C9JJH3 530 aa13.39□□□□□ -0.27
SF3B6-201ENST00000233468 SEC24BO95487 1268 aa13.39□□□□□ -0.27
SF3B6-201ENST00000233468 FGAP02671 866 aa13.39□□□□□ -0.27
SF3B6-201ENST00000233468 PCP11498 1178 aaKnown RBP13.39□□□□□ -0.27
SF3B6-201ENST00000233468 LACTBP83111 547 aaPredicted RBP13.39□□□□□ -0.27
SF3B6-201ENST00000233468 SPP2Q13103 211 aa13.39□□□□□ -0.27
SF3B6-201ENST00000233468 KIAA1211Q6ZU35 1233 aa13.39□□□□□ -0.27
SF3B6-201ENST00000233468 PRRT2Q7Z6L0 340 aaPredicted RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms