RNA–Protein interactions for RNA: ENSMUST00000087883.12

Col3a1-201, Transcript of Collagen alpha-1(III) chain, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Col3a1, Length 5,564 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1-201ENSMUST00000087883 Krtap4-6Q3V4B7 195 aa4.07□□□□□ -1.76
Col3a1-201ENSMUST00000087883 Gm11938Q9D3H4 131 aa4.06□□□□□ -1.76
Col3a1-201ENSMUST00000087883 Ubr4A2AN08 5180 aa4.06□□□□□ -1.76
Col3a1-201ENSMUST00000087883 Gm11562A0PK51 136 aa4.03□□□□□ -1.77
Col3a1-201ENSMUST00000087883 Krtap4-2B1AQ85 167 aa4.01□□□□□ -1.77
Col3a1-201ENSMUST00000087883 Ush2AQ2QI47 5193 aa3.99□□□□□ -1.77
Col3a1-201ENSMUST00000087883 Mdn1A2ANY6 5589 aaKnown RBP3.99□□□□□ -1.77
Col3a1-201ENSMUST00000087883 A030003K21RikA0A1Y7VIM3 128 aa3.97□□□□□ -1.77
Col3a1-201ENSMUST00000087883 Krtap4-16Q91W93 202 aa3.94□□□□□ -1.78
Col3a1-201ENSMUST00000087883 Rnf213E9Q555 5152 aaKnown RBP3.9□□□□□ -1.78
Col3a1-201ENSMUST00000087883 Krtap4-1Q3UUY3 169 aa3.89□□□□□ -1.79
Col3a1-201ENSMUST00000087883 2300003K06RikA2A4M0 262 aa3.88□□□□□ -1.79
Col3a1-201ENSMUST00000087883 Muc5bE9Q5I3 4800 aa3.86□□□□□ -1.79
Col3a1-201ENSMUST00000087883 Lce1kJ3QP15 125 aa3.84□□□□□ -1.79
Col3a1-201ENSMUST00000087883 Krtap4-7Q9D732 168 aa3.82□□□□□ -1.8
Col3a1-201ENSMUST00000087883 A0A1Y7VJH8 109 aa3.82□□□□□ -1.8
Col3a1-201ENSMUST00000087883 Mt3P28184 68 aa3.8□□□□□ -1.8
Col3a1-201ENSMUST00000087883 Gm11564A2A4L9 201 aa3.8□□□□□ -1.8
Col3a1-201ENSMUST00000087883 Gm11563B1AQ90 168 aa3.8□□□□□ -1.8
Col3a1-201ENSMUST00000087883 Gm11595B1AQA7 289 aa3.8□□□□□ -1.8
Col3a1-201ENSMUST00000087883 Krtap4-8B1AQA8 209 aa3.8□□□□□ -1.8
Col3a1-201ENSMUST00000087883 Krtap4-9B1AQA9 244 aa3.78□□□□□ -1.8
Col3a1-201ENSMUST00000087883 Krtap28-10A0A1Y7VP58 119 aa3.78□□□□□ -1.8
Col3a1-201ENSMUST00000087883 Gm11596B1AQB0 205 aa3.77□□□□□ -1.81
Col3a1-201ENSMUST00000087883 SspoQ8CG65 4998 aa3.71□□□□□ -1.82
Col3a1-201ENSMUST00000087883 Krtap4-13Q9D7P3 165 aa3.71□□□□□ -1.82
Col3a1-201ENSMUST00000087883 Gm6217A0A1Y7VJK9 128 aa3.7□□□□□ -1.82
Col3a1-201ENSMUST00000087883 Lce1a1Q9CQH5 143 aa3.6□□□□□ -1.83
Col3a1-201ENSMUST00000087883 Krtap28-13A0A087WQP5 138 aa3.59□□□□□ -1.84
Col3a1-201ENSMUST00000087883 Gm7544A0A1Y7VJ58 118 aa3.58□□□□□ -1.84
Col3a1-201ENSMUST00000087883 Fsip2A2ARZ3 6995 aa3.54□□□□□ -1.84
Col3a1-201ENSMUST00000087883 A030005L19RikA0A1Y7VIU2 113 aa3.54□□□□□ -1.84
Col3a1-201ENSMUST00000087883 Mt1P02802 61 aaKnown RBP3.52□□□□□ -1.85
Col3a1-201ENSMUST00000087883 Syne2Q6ZWQ0 6874 aaKnown RBP3.52□□□□□ -1.85
Col3a1-201ENSMUST00000087883 A030005K14RikA0A1Y7VNY1 122 aa3.49□□□□□ -1.85
Col3a1-201ENSMUST00000087883 Sprr2bO70554 98 aa3.46□□□□□ -1.86
Col3a1-201ENSMUST00000087883 A0A1Y7VJ07 166 aa3.45□□□□□ -1.86
Col3a1-201ENSMUST00000087883 Krtap31-2Q8CAY5 177 aa3.4□□□□□ -1.87
Col3a1-201ENSMUST00000087883 Gm11554B1AQB2 190 aa3.38□□□□□ -1.87
Col3a1-201ENSMUST00000087883 Krtap6-3A0A087WQL6 57 aa3.31□□□□□ -1.88
Col3a1-201ENSMUST00000087883 Muc16A0A140LJ72 8478 aa3.29□□□□□ -1.88
Col3a1-201ENSMUST00000087883 ObscnA2AAJ9 8891 aaKnown RBP3.28□□□□□ -1.88
Col3a1-201ENSMUST00000087883 Krtap20-2E9Q0A8 60 aa3.24□□□□□ -1.89
Col3a1-201ENSMUST00000087883 Gm11555B1AQ89 175 aa3.12□□□□□ -1.91
Col3a1-201ENSMUST00000087883 A030014E15RikA0A1Y7VJV2 120 aa3.11□□□□□ -1.91
Col3a1-201ENSMUST00000087883 1110025L11RikO09048 78 aa2.9□□□□□ -1.95
Col3a1-201ENSMUST00000087883 Krtap6-5Q925H3 78 aa2.9□□□□□ -1.95
Col3a1-201ENSMUST00000087883 Kmt2dQ6PDK2 5588 aa2.88□□□□□ -1.95
Col3a1-201ENSMUST00000087883 DstQ91ZU6 7393 aaKnown RBP2.85□□□□□ -1.95
Col3a1-201ENSMUST00000087883 Eppk1Q8R0W0 6548 aa2.82□□□□□ -1.96
Col3a1-201ENSMUST00000087883 Macf1Q9QXZ0 7354 aaKnown RBP2.78□□□□□ -1.96
Col3a1-201ENSMUST00000087883 Gm11568A2A4M2 211 aa2.76□□□□□ -1.97
Col3a1-201ENSMUST00000087883 Gm10229O08631 77 aa2.76□□□□□ -1.97
Col3a1-201ENSMUST00000087883 Krtap9-1Q64526 186 aa2.76□□□□□ -1.97
Col3a1-201ENSMUST00000087883 NebE9Q1W3 7152 aa2.75□□□□□ -1.97
Col3a1-201ENSMUST00000087883 Phgr1Q8K0G7 91 aa2.71□□□□□ -1.98
Col3a1-201ENSMUST00000087883 Gm11559Q9D3H7 191 aa2.64□□□□□ -1.99
Col3a1-201ENSMUST00000087883 Muc19Q6PZE0 7524 aa2.59□□□□□ -1.99
Col3a1-201ENSMUST00000087883 Krtap5-2Q9D5Z7 189 aa2.5□□□□□ -2.01
Col3a1-201ENSMUST00000087883 A0A286YCP9 139 aa2.48□□□□□ -2.01
Col3a1-201ENSMUST00000087883 Gm11639A0A1D5RLM8 5808 aa2.34□□□□□ -2.03
Col3a1-201ENSMUST00000087883 Gm4553A0A1B0GSA9 284 aa2.31□□□□□ -2.04
Col3a1-201ENSMUST00000087883 Gm10153A0A1B0GRL1 320 aa2.24□□□□□ -2.05
Col3a1-201ENSMUST00000087883 Hmcn1D3YXG0 5634 aa2.24□□□□□ -2.05
Col3a1-201ENSMUST00000087883 Gm2431E9Q8S1 172 aa2.22□□□□□ -2.05
Col3a1-201ENSMUST00000087883 Gpr98Q8VHN7 6298 aaKnown RBP2.2□□□□□ -2.06
Col3a1-201ENSMUST00000087883 Krtap6-2O08884 159 aa2.18□□□□□ -2.06
Col3a1-201ENSMUST00000087883 Gm11567Q9D141 195 aa2.16□□□□□ -2.06
Col3a1-201ENSMUST00000087883 Gm45337A0A1B0GS71 263 aa2.1□□□□□ -2.07
Col3a1-201ENSMUST00000087883 Gm40460A0A1B0GR10 244 aa2.07□□□□□ -2.08
Col3a1-201ENSMUST00000087883 Gm7579A0A1B0GRJ4 243 aa2.07□□□□□ -2.08
Col3a1-201ENSMUST00000087883 Krtap5-5Q2TA51 241 aa2.07□□□□□ -2.08
Col3a1-201ENSMUST00000087883 Krtap5-4Q62220 223 aa2.07□□□□□ -2.08
Col3a1-201ENSMUST00000087883 Krtap21-1Q925H4 128 aa2.02□□□□□ -2.09
Col3a1-201ENSMUST00000087883 AhnakE9Q616 5656 aaKnown RBP2□□□□□ -2.09
Col3a1-201ENSMUST00000087883 Gm39115A0A1B0GSH7 232 aa1.89□□□□□ -2.11
Col3a1-201ENSMUST00000087883 Gm45618A0A1B0GSA0 219 aa1.6□□□□□ -2.15
Col3a1-201ENSMUST00000087883 Gm29735A0A1B0GT06 219 aa1.56□□□□□ -2.16
Col3a1-201ENSMUST00000087883 Krtap5-1Q64507 230 aa1.18□□□□□ -2.22
Col3a1-201ENSMUST00000087883 Gm4559A4IF42 199 aa1.02□□□□□ -2.25
Retrieved 80 of 22,080 RNA–protein pairs in 68.5 ms