RNA–Protein interactions for RNA: ENSMUST00000061628.6

Pcdh20-201, Transcript of Protocadherin-20, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Pcdh20, Length 5,241 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh20-201ENSMUST00000061628 Pkhd1E9PZ36 4059 aa4.43□□□□□ -1.7
Pcdh20-201ENSMUST00000061628 Krtap4-2B1AQ85 167 aa4.4□□□□□ -1.7
Pcdh20-201ENSMUST00000061628 Krtap4-6Q3V4B7 195 aa4.37□□□□□ -1.71
Pcdh20-201ENSMUST00000061628 Mdn1A2ANY6 5589 aaKnown RBP4.36□□□□□ -1.71
Pcdh20-201ENSMUST00000061628 Pkhd1l1Q80ZA4 4249 aa4.36□□□□□ -1.71
Pcdh20-201ENSMUST00000061628 Syne1Q6ZWR6 8799 aa4.34□□□□□ -1.72
Pcdh20-201ENSMUST00000061628 Krtap31-1Q9D644 177 aa4.33□□□□□ -1.72
Pcdh20-201ENSMUST00000061628 Gm11562A0PK51 136 aa4.31□□□□□ -1.72
Pcdh20-201ENSMUST00000061628 Gm11938Q9D3H4 131 aa4.29□□□□□ -1.72
Pcdh20-201ENSMUST00000061628 4932415D10RikA0A1W2P6U8 4986 aa4.24□□□□□ -1.73
Pcdh20-201ENSMUST00000061628 Ubr4A2AN08 5180 aa4.23□□□□□ -1.73
Pcdh20-201ENSMUST00000061628 Krtap4-1Q3UUY3 169 aa4.21□□□□□ -1.74
Pcdh20-201ENSMUST00000061628 Fat4Q2PZL6 4981 aa4.17□□□□□ -1.74
Pcdh20-201ENSMUST00000061628 ZanO88799 5376 aa4.16□□□□□ -1.74
Pcdh20-201ENSMUST00000061628 2300003K06RikA2A4M0 262 aa4.15□□□□□ -1.74
Pcdh20-201ENSMUST00000061628 Muc5bE9Q5I3 4800 aa4.15□□□□□ -1.75
Pcdh20-201ENSMUST00000061628 Gm11596B1AQB0 205 aa4.14□□□□□ -1.75
Pcdh20-201ENSMUST00000061628 Mt3P28184 68 aa4.14□□□□□ -1.75
Pcdh20-201ENSMUST00000061628 Gm11564A2A4L9 201 aa4.13□□□□□ -1.75
Pcdh20-201ENSMUST00000061628 Gm11563B1AQ90 168 aa4.13□□□□□ -1.75
Pcdh20-201ENSMUST00000061628 Gm11595B1AQA7 289 aa4.13□□□□□ -1.75
Pcdh20-201ENSMUST00000061628 Krtap4-8B1AQA8 209 aa4.13□□□□□ -1.75
Pcdh20-201ENSMUST00000061628 Krtap4-7Q9D732 168 aa4.12□□□□□ -1.75
Pcdh20-201ENSMUST00000061628 Krtap4-9B1AQA9 244 aa4.11□□□□□ -1.75
Pcdh20-201ENSMUST00000061628 Hmcn2A2AJ76 5100 aa4.09□□□□□ -1.76
Pcdh20-201ENSMUST00000061628 Lce1kJ3QP15 125 aa4.08□□□□□ -1.76
Pcdh20-201ENSMUST00000061628 Abca13Q5SSE9 5034 aa3.98□□□□□ -1.77
Pcdh20-201ENSMUST00000061628 Krtap4-13Q9D7P3 165 aa3.97□□□□□ -1.77
Pcdh20-201ENSMUST00000061628 Krtap17-1A2A5X6 109 aa3.95□□□□□ -1.78
Pcdh20-201ENSMUST00000061628 Mt1P02802 61 aaKnown RBP3.93□□□□□ -1.78
Pcdh20-201ENSMUST00000061628 Rnf213E9Q555 5152 aaKnown RBP3.93□□□□□ -1.78
Pcdh20-201ENSMUST00000061628 Krtap4-16Q91W93 202 aa3.84□□□□□ -1.8
Pcdh20-201ENSMUST00000061628 Krtap6-3A0A087WQL6 57 aa3.8□□□□□ -1.8
Pcdh20-201ENSMUST00000061628 SspoQ8CG65 4998 aa3.78□□□□□ -1.8
Pcdh20-201ENSMUST00000061628 Lce1a1Q9CQH5 143 aa3.73□□□□□ -1.81
Pcdh20-201ENSMUST00000061628 Syne2Q6ZWQ0 6874 aaKnown RBP3.73□□□□□ -1.81
Pcdh20-201ENSMUST00000061628 Krtap31-2Q8CAY5 177 aa3.73□□□□□ -1.81
Pcdh20-201ENSMUST00000061628 Ush2AQ2QI47 5193 aa3.73□□□□□ -1.81
Pcdh20-201ENSMUST00000061628 Sprr2bO70554 98 aa3.71□□□□□ -1.82
Pcdh20-201ENSMUST00000061628 ObscnA2AAJ9 8891 aaKnown RBP3.7□□□□□ -1.82
Pcdh20-201ENSMUST00000061628 A0A286YCP9 139 aa3.66□□□□□ -1.82
Pcdh20-201ENSMUST00000061628 Gm11555B1AQ89 175 aa3.66□□□□□ -1.82
Pcdh20-201ENSMUST00000061628 Fsip2A2ARZ3 6995 aa3.65□□□□□ -1.82
Pcdh20-201ENSMUST00000061628 Gm11554B1AQB2 190 aa3.57□□□□□ -1.84
Pcdh20-201ENSMUST00000061628 Krtap20-2E9Q0A8 60 aa3.51□□□□□ -1.85
Pcdh20-201ENSMUST00000061628 Eppk1Q8R0W0 6548 aa3.48□□□□□ -1.85
Pcdh20-201ENSMUST00000061628 Muc16A0A140LJ72 8478 aa3.44□□□□□ -1.86
Pcdh20-201ENSMUST00000061628 Kmt2dQ6PDK2 5588 aa3.28□□□□□ -1.88
Pcdh20-201ENSMUST00000061628 1110025L11RikO09048 78 aa3.16□□□□□ -1.9
Pcdh20-201ENSMUST00000061628 Krtap6-5Q925H3 78 aa3.16□□□□□ -1.9
Pcdh20-201ENSMUST00000061628 DstQ91ZU6 7393 aaKnown RBP3.09□□□□□ -1.91
Pcdh20-201ENSMUST00000061628 Macf1Q9QXZ0 7354 aaKnown RBP3□□□□□ -1.93
Pcdh20-201ENSMUST00000061628 Gm10229O08631 77 aa2.98□□□□□ -1.93
Pcdh20-201ENSMUST00000061628 NebE9Q1W3 7152 aa2.93□□□□□ -1.94
Pcdh20-201ENSMUST00000061628 Gm11559Q9D3H7 191 aa2.85□□□□□ -1.95
Pcdh20-201ENSMUST00000061628 Gm11639A0A1D5RLM8 5808 aa2.83□□□□□ -1.96
Pcdh20-201ENSMUST00000061628 Gm11568A2A4M2 211 aa2.8□□□□□ -1.96
Pcdh20-201ENSMUST00000061628 Krtap9-1Q64526 186 aa2.8□□□□□ -1.96
Pcdh20-201ENSMUST00000061628 Phgr1Q8K0G7 91 aa2.76□□□□□ -1.97
Pcdh20-201ENSMUST00000061628 Gpr98Q8VHN7 6298 aaKnown RBP2.7□□□□□ -1.98
Pcdh20-201ENSMUST00000061628 Muc19Q6PZE0 7524 aa2.62□□□□□ -1.99
Pcdh20-201ENSMUST00000061628 Krtap5-2Q9D5Z7 189 aa2.57□□□□□ -2
Pcdh20-201ENSMUST00000061628 Hmcn1D3YXG0 5634 aa2.44□□□□□ -2.02
Pcdh20-201ENSMUST00000061628 Gm4553A0A1B0GSA9 284 aa2.42□□□□□ -2.02
Pcdh20-201ENSMUST00000061628 Krtap6-2O08884 159 aa2.38□□□□□ -2.03
Pcdh20-201ENSMUST00000061628 Gm45618A0A1B0GSA0 219 aa2.3□□□□□ -2.04
Pcdh20-201ENSMUST00000061628 Krtap21-1Q925H4 128 aa2.23□□□□□ -2.05
Pcdh20-201ENSMUST00000061628 AhnakE9Q616 5656 aaKnown RBP2.22□□□□□ -2.05
Pcdh20-201ENSMUST00000061628 Gm2431E9Q8S1 172 aa2.2□□□□□ -2.06
Pcdh20-201ENSMUST00000061628 Gm39115A0A1B0GSH7 232 aa2.2□□□□□ -2.06
Pcdh20-201ENSMUST00000061628 Gm45337A0A1B0GS71 263 aa2.18□□□□□ -2.06
Pcdh20-201ENSMUST00000061628 Gm10153A0A1B0GRL1 320 aa2.16□□□□□ -2.06
Pcdh20-201ENSMUST00000061628 Gm40460A0A1B0GR10 244 aa2.11□□□□□ -2.07
Pcdh20-201ENSMUST00000061628 Gm7579A0A1B0GRJ4 243 aa2.11□□□□□ -2.07
Pcdh20-201ENSMUST00000061628 Krtap5-5Q2TA51 241 aa2.11□□□□□ -2.07
Pcdh20-201ENSMUST00000061628 Krtap5-4Q62220 223 aa2.11□□□□□ -2.07
Pcdh20-201ENSMUST00000061628 Gm29735A0A1B0GT06 219 aa2.06□□□□□ -2.08
Pcdh20-201ENSMUST00000061628 Gm11567Q9D141 195 aa2.01□□□□□ -2.09
Pcdh20-201ENSMUST00000061628 Krtap5-1Q64507 230 aa1.7□□□□□ -2.14
Pcdh20-201ENSMUST00000061628 Gm4559A4IF42 199 aa1.39□□□□□ -2.19
Retrieved 80 of 22,080 RNA–protein pairs in 115.1 ms