RNA–Protein interactions for RNA: ENSMUST00000056508.11

Clcn3-202, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS P4 TSL 1 (best) BASIC

Gene Clcn3, Length 5,684 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-202ENSMUST00000056508 Sprr2eO70556 76 aa2.54□□□□□ -2
Clcn3-202ENSMUST00000056508 Ush2AQ2QI47 5193 aa2.54□□□□□ -2
Clcn3-202ENSMUST00000056508 Sprr2dO70555 85 aa2.54□□□□□ -2
Clcn3-202ENSMUST00000056508 ZanO88799 5376 aa2.52□□□□□ -2.01
Clcn3-202ENSMUST00000056508 Rnf213E9Q555 5152 aaKnown RBP2.51□□□□□ -2.01
Clcn3-202ENSMUST00000056508 Krtap16-3Q8C1I6 86 aa2.51□□□□□ -2.01
Clcn3-202ENSMUST00000056508 Dnah8Q91XQ0 4731 aa2.5□□□□□ -2.01
Clcn3-202ENSMUST00000056508 Gm11567Q9D141 195 aa2.5□□□□□ -2.01
Clcn3-202ENSMUST00000056508 Lce1gQ9D195 139 aa2.48□□□□□ -2.01
Clcn3-202ENSMUST00000056508 Lce1iQ9D6P5 149 aa2.48□□□□□ -2.01
Clcn3-202ENSMUST00000056508 Krtap4-16Q91W93 202 aa2.47□□□□□ -2.01
Clcn3-202ENSMUST00000056508 A0A286YCP9 139 aa2.46□□□□□ -2.02
Clcn3-202ENSMUST00000056508 Mt2P02798 61 aa2.42□□□□□ -2.02
Clcn3-202ENSMUST00000056508 Lce1a1Q9CQH5 143 aa2.39□□□□□ -2.03
Clcn3-202ENSMUST00000056508 Lce1fB9EJP6 147 aa2.39□□□□□ -2.03
Clcn3-202ENSMUST00000056508 Lce1cQ9D1C5 147 aa2.39□□□□□ -2.03
Clcn3-202ENSMUST00000056508 Lce1lQ9D1G7 135 aa2.39□□□□□ -2.03
Clcn3-202ENSMUST00000056508 Lce1dQ9D731 133 aa2.39□□□□□ -2.03
Clcn3-202ENSMUST00000056508 4932415D10RikA0A1W2P6U8 4986 aa2.37□□□□□ -2.03
Clcn3-202ENSMUST00000056508 Syne1Q6ZWR6 8799 aa2.32□□□□□ -2.04
Clcn3-202ENSMUST00000056508 Krtap19-1Q925H2 87 aa2.31□□□□□ -2.04
Clcn3-202ENSMUST00000056508 Lce1kJ3QP15 125 aa2.3□□□□□ -2.04
Clcn3-202ENSMUST00000056508 Gm11938Q9D3H4 131 aa2.25□□□□□ -2.05
Clcn3-202ENSMUST00000056508 SspoQ8CG65 4998 aa2.12□□□□□ -2.07
Clcn3-202ENSMUST00000056508 Sprr2bO70554 98 aa2.12□□□□□ -2.07
Clcn3-202ENSMUST00000056508 DstQ91ZU6 7393 aaKnown RBP2.11□□□□□ -2.07
Clcn3-202ENSMUST00000056508 Muc16A0A140LJ72 8478 aa2.11□□□□□ -2.07
Clcn3-202ENSMUST00000056508 Prm1P02319 51 aa2.07□□□□□ -2.08
Clcn3-202ENSMUST00000056508 Krtap17-1A2A5X6 109 aa2.06□□□□□ -2.08
Clcn3-202ENSMUST00000056508 Mdn1A2ANY6 5589 aaKnown RBP2.06□□□□□ -2.08
Clcn3-202ENSMUST00000056508 Macf1Q9QXZ0 7354 aaKnown RBP2.02□□□□□ -2.09
Clcn3-202ENSMUST00000056508 Lce1a2Q9D1K4 149 aa1.98□□□□□ -2.09
Clcn3-202ENSMUST00000056508 Mt1P02802 61 aaKnown RBP1.95□□□□□ -2.1
Clcn3-202ENSMUST00000056508 Fsip2A2ARZ3 6995 aa1.91□□□□□ -2.1
Clcn3-202ENSMUST00000056508 Gm10061D3Z714 54 aa1.9□□□□□ -2.1
Clcn3-202ENSMUST00000056508 Muc5bE9Q5I3 4800 aa1.9□□□□□ -2.1
Clcn3-202ENSMUST00000056508 Syne2Q6ZWQ0 6874 aaKnown RBP1.88□□□□□ -2.11
Clcn3-202ENSMUST00000056508 Gm7735D3YX18 52 aa1.88□□□□□ -2.11
Clcn3-202ENSMUST00000056508 Mt4P47945 62 aa1.88□□□□□ -2.11
Clcn3-202ENSMUST00000056508 ObscnA2AAJ9 8891 aaKnown RBP1.86□□□□□ -2.11
Clcn3-202ENSMUST00000056508 Gm9789Q8BIG3 52 aa1.86□□□□□ -2.11
Clcn3-202ENSMUST00000056508 Gm11569B1AQB1 180 aa1.84□□□□□ -2.11
Clcn3-202ENSMUST00000056508 NebE9Q1W3 7152 aa1.84□□□□□ -2.11
Clcn3-202ENSMUST00000056508 Gm10229O08631 77 aa1.84□□□□□ -2.11
Clcn3-202ENSMUST00000056508 Gm45618A0A1B0GSA0 219 aa1.82□□□□□ -2.12
Clcn3-202ENSMUST00000056508 Krtap4-6Q3V4B7 195 aa1.71□□□□□ -2.14
Clcn3-202ENSMUST00000056508 Gm39115A0A1B0GSH7 232 aa1.7□□□□□ -2.14
Clcn3-202ENSMUST00000056508 1110025L11RikO09048 78 aa1.7□□□□□ -2.14
Clcn3-202ENSMUST00000056508 Gpr98Q8VHN7 6298 aaKnown RBP1.69□□□□□ -2.14
Clcn3-202ENSMUST00000056508 Gm11554B1AQB2 190 aa1.66□□□□□ -2.14
Clcn3-202ENSMUST00000056508 Kmt2dQ6PDK2 5588 aa1.66□□□□□ -2.14
Clcn3-202ENSMUST00000056508 Krtap4-9B1AQA9 244 aa1.62□□□□□ -2.15
Clcn3-202ENSMUST00000056508 Gm29735A0A1B0GT06 219 aa1.61□□□□□ -2.15
Clcn3-202ENSMUST00000056508 Phgr1Q8K0G7 91 aa1.61□□□□□ -2.15
Clcn3-202ENSMUST00000056508 Eppk1Q8R0W0 6548 aa1.61□□□□□ -2.15
Clcn3-202ENSMUST00000056508 Muc19Q6PZE0 7524 aa1.61□□□□□ -2.15
Clcn3-202ENSMUST00000056508 Gm11564A2A4L9 201 aa1.6□□□□□ -2.15
Clcn3-202ENSMUST00000056508 Gm11595B1AQA7 289 aa1.6□□□□□ -2.15
Clcn3-202ENSMUST00000056508 Krtap4-8B1AQA8 209 aa1.6□□□□□ -2.15
Clcn3-202ENSMUST00000056508 Gm2431E9Q8S1 172 aa1.59□□□□□ -2.16
Clcn3-202ENSMUST00000056508 Krtap4-13Q9D7P3 165 aa1.55□□□□□ -2.16
Clcn3-202ENSMUST00000056508 Gm11596B1AQB0 205 aa1.54□□□□□ -2.16
Clcn3-202ENSMUST00000056508 Krtap6-5Q925H3 78 aa1.53□□□□□ -2.16
Clcn3-202ENSMUST00000056508 Krtap6-3A0A087WQL6 57 aa1.44□□□□□ -2.18
Clcn3-202ENSMUST00000056508 Hmcn1D3YXG0 5634 aa1.43□□□□□ -2.18
Clcn3-202ENSMUST00000056508 Krtap5-4Q62220 223 aa1.42□□□□□ -2.18
Clcn3-202ENSMUST00000056508 Gm45337A0A1B0GS71 263 aa1.41□□□□□ -2.18
Clcn3-202ENSMUST00000056508 Gm10153A0A1B0GRL1 320 aa1.39□□□□□ -2.19
Clcn3-202ENSMUST00000056508 Krtap20-2E9Q0A8 60 aa1.38□□□□□ -2.19
Clcn3-202ENSMUST00000056508 Krtap6-2O08884 159 aa1.34□□□□□ -2.2
Clcn3-202ENSMUST00000056508 Krtap5-2Q9D5Z7 189 aa1.29□□□□□ -2.2
Clcn3-202ENSMUST00000056508 Gm11639A0A1D5RLM8 5808 aa1.29□□□□□ -2.2
Clcn3-202ENSMUST00000056508 Gm4559A4IF42 199 aa1.24□□□□□ -2.21
Clcn3-202ENSMUST00000056508 Krtap5-1Q64507 230 aa1.23□□□□□ -2.21
Clcn3-202ENSMUST00000056508 Krtap21-1Q925H4 128 aa1.22□□□□□ -2.21
Clcn3-202ENSMUST00000056508 Gm4553A0A1B0GSA9 284 aa1.22□□□□□ -2.21
Clcn3-202ENSMUST00000056508 Gm40460A0A1B0GR10 244 aa1.16□□□□□ -2.22
Clcn3-202ENSMUST00000056508 Gm7579A0A1B0GRJ4 243 aa1.16□□□□□ -2.22
Clcn3-202ENSMUST00000056508 Krtap5-5Q2TA51 241 aa1.16□□□□□ -2.22
Clcn3-202ENSMUST00000056508 AhnakE9Q616 5656 aaKnown RBP1□□□□□ -2.25
Retrieved 80 of 22,080 RNA–protein pairs in 121.2 ms