RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 DNAJC18Q9H819 358 aa23.81■■□□□ 1.4
CLN3-262ENST00000637699 TXNRD2Q9NNW7 524 aa23.81■■□□□ 1.4
CLN3-262ENST00000637699 PALD1Q9ULE6 856 aa23.81■■□□□ 1.4
CLN3-262ENST00000637699 SIPA1L1O43166 1804 aa23.8■■□□□ 1.4
CLN3-262ENST00000637699 BCAR3O75815 825 aa23.8■■□□□ 1.4
CLN3-262ENST00000637699 MNX1P50219 401 aaPredicted RBP23.8■■□□□ 1.4
CLN3-262ENST00000637699 HERVK_113P62684 666 aa23.8■■□□□ 1.4
CLN3-262ENST00000637699 CCDC158Q5M9N0 1113 aa23.8■■□□□ 1.4
CLN3-262ENST00000637699 SLC17A8Q8NDX2 589 aa23.8■■□□□ 1.4
CLN3-262ENST00000637699 GDF15Q99988 308 aa23.8■■□□□ 1.4
CLN3-262ENST00000637699 NUDT12Q9BQG2 462 aa23.8■■□□□ 1.4
CLN3-262ENST00000637699 DBNDD2Q9BQY9 259 aa23.8■■□□□ 1.4
CLN3-262ENST00000637699 C11orf49Q9H6J7 331 aa23.8■■□□□ 1.4
CLN3-262ENST00000637699 SAP30BPQ9UHR5 308 aaKnown RBP23.8■■□□□ 1.4
CLN3-262ENST00000637699 COL6A3P12111 3177 aa23.8■■□□□ 1.4
CLN3-262ENST00000637699 FLT1P17948 1338 aa23.8■■□□□ 1.4
CLN3-262ENST00000637699 PLXNB2O15031 1838 aa23.8■■□□□ 1.4
CLN3-262ENST00000637699 C19orf81C9J6K1 198 aa23.79■■□□□ 1.4
CLN3-262ENST00000637699 USP17L10C9JJH3 530 aa23.79■■□□□ 1.4
CLN3-262ENST00000637699 CYP2E1P05181 493 aaPredicted RBP23.79■■□□□ 1.4
CLN3-262ENST00000637699 PRKAR2AP13861 404 aaKnown RBP23.79■■□□□ 1.4
CLN3-262ENST00000637699 OS9Q13438 667 aaPredicted RBP23.79■■□□□ 1.4
CLN3-262ENST00000637699 TNNI3KQ59H18 835 aa23.79■■□□□ 1.4
CLN3-262ENST00000637699 OGDHLQ9ULD0 1010 aa23.79■■□□□ 1.4
CLN3-262ENST00000637699 FPGT-TNNI3KV9GXZ4 949 aa23.79■■□□□ 1.4
CLN3-262ENST00000637699 SYN1P17600 705 aa23.78■■□□□ 1.4
CLN3-262ENST00000637699 METTL16Q86W50 562 aaKnown RBP23.78■■□□□ 1.4
CLN3-262ENST00000637699 CCAR1Q8IX12 1150 aaKnown RBP23.78■■□□□ 1.4
CLN3-262ENST00000637699 GPR108Q9NPR9 543 aa23.78■■□□□ 1.4
CLN3-262ENST00000637699 RBPJLQ9UBG7 517 aa23.78■■□□□ 1.4
CLN3-262ENST00000637699 ZBTB21Q9ULJ3 1066 aa23.78■■□□□ 1.4
CLN3-262ENST00000637699 BMP8BP34820 402 aa23.77■■□□□ 1.4
CLN3-262ENST00000637699 Q3C1V9 767 aa23.77■■□□□ 1.4
CLN3-262ENST00000637699 MAP3K21Q5TCX8 1036 aa23.77■■□□□ 1.4
CLN3-262ENST00000637699 SOCS4Q8WXH5 440 aa23.77■■□□□ 1.4
CLN3-262ENST00000637699 PAGR1Q9BTK6 254 aa23.77■■□□□ 1.4
CLN3-262ENST00000637699 DDX60LQ5H9U9 1706 aaKnown RBP23.76■■□□□ 1.39
CLN3-262ENST00000637699 XRCC5P13010 732 aaKnown RBP23.76■■□□□ 1.39
CLN3-262ENST00000637699 ZAP70P43403 619 aa23.76■■□□□ 1.39
CLN3-262ENST00000637699 DYNLL1P63167 89 aaKnown RBP23.76■■□□□ 1.39
CLN3-262ENST00000637699 PDE3AQ14432 1141 aa23.76■■□□□ 1.39
CLN3-262ENST00000637699 TMEM57Q8N5G2 664 aa23.76■■□□□ 1.39
CLN3-262ENST00000637699 PORCNQ9H237 461 aa23.76■■□□□ 1.39
CLN3-262ENST00000637699 GINM1Q9NU53 330 aa23.76■■□□□ 1.39
CLN3-262ENST00000637699 HLA-DOAP06340 250 aa23.75■■□□□ 1.39
CLN3-262ENST00000637699 MAPK4P31152 587 aa23.75■■□□□ 1.39
CLN3-262ENST00000637699 ERVK-9P63128 1117 aa23.75■■□□□ 1.39
CLN3-262ENST00000637699 ERVK-24P63145 666 aa23.75■■□□□ 1.39
CLN3-262ENST00000637699 POLA2Q14181 598 aa23.75■■□□□ 1.39
CLN3-262ENST00000637699 PIH1D3Q9NQM4 214 aaKnown RBP23.75■■□□□ 1.39
CLN3-262ENST00000637699 EMILIN3Q9NT22 766 aa23.75■■□□□ 1.39
CLN3-262ENST00000637699 MAST2Q6P0Q8 1798 aa23.75■■□□□ 1.39
CLN3-262ENST00000637699 CDK5RAP2Q96SN8 1893 aa23.75■■□□□ 1.39
CLN3-262ENST00000637699 A0A0C4DFX4 3053 aa23.74■■□□□ 1.39
CLN3-262ENST00000637699 SURF6O75683 361 aaKnown RBP23.74■■□□□ 1.39
CLN3-262ENST00000637699 ZKSCAN1P17029 563 aaPredicted RBP23.74■■□□□ 1.39
CLN3-262ENST00000637699 CACNB2Q08289 660 aaPredicted RBP23.74■■□□□ 1.39
CLN3-262ENST00000637699 CCL14Q16627 93 aa23.74■■□□□ 1.39
CLN3-262ENST00000637699 MYO5AQ9Y4I1 1855 aaKnown RBP23.74■■□□□ 1.39
CLN3-262ENST00000637699 DLL1O00548 723 aa23.73■■□□□ 1.39
CLN3-262ENST00000637699 GH2P01242 217 aa23.73■■□□□ 1.39
CLN3-262ENST00000637699 CYP7A1P22680 504 aa23.73■■□□□ 1.39
CLN3-262ENST00000637699 MAGEA10P43363 369 aaPredicted RBP23.73■■□□□ 1.39
CLN3-262ENST00000637699 ATP8B2P98198 1209 aa23.73■■□□□ 1.39
CLN3-262ENST00000637699 USP17L2Q6R6M4 530 aa23.73■■□□□ 1.39
CLN3-262ENST00000637699 GPR142Q7Z601 462 aa23.73■■□□□ 1.39
CLN3-262ENST00000637699 TRMT44Q8IYL2 757 aaKnown RBP23.73■■□□□ 1.39
CLN3-262ENST00000637699 SSH3Q8TE77 659 aa23.73■■□□□ 1.39
CLN3-262ENST00000637699 USP6NLQ92738 828 aa23.73■■□□□ 1.39
CLN3-262ENST00000637699 PFASO15067 1338 aa23.73■■□□□ 1.39
CLN3-262ENST00000637699 CCND3P30281 292 aaPredicted RBP23.72■■□□□ 1.39
CLN3-262ENST00000637699 ZYXQ15942 572 aaKnown RBP23.72■■□□□ 1.39
CLN3-262ENST00000637699 POTEEQ6S8J3 1075 aa23.72■■□□□ 1.39
CLN3-262ENST00000637699 PLEKHH3Q7Z736 793 aa23.72■■□□□ 1.39
CLN3-262ENST00000637699 MIGA1Q8NAN2 632 aa23.72■■□□□ 1.39
CLN3-262ENST00000637699 ZNF512BQ96KM6 892 aaPredicted RBP23.72■■□□□ 1.39
CLN3-262ENST00000637699 C1orf115Q9H7X2 142 aa23.72■■□□□ 1.39
CLN3-262ENST00000637699 CWC22Q9HCG8 908 aaKnown RBP23.72■■□□□ 1.39
CLN3-262ENST00000637699 FOCADQ5VW36 1801 aa23.72■■□□□ 1.39
CLN3-262ENST00000637699 RGS2P41220 211 aa23.71■■□□□ 1.39
CLN3-262ENST00000637699 MORN1Q5T089 497 aa23.71■■□□□ 1.39
CLN3-262ENST00000637699 GTF3C2Q8WUA4 911 aaPredicted RBP23.71■■□□□ 1.39
CLN3-262ENST00000637699 CCDC8Q9H0W5 538 aaPredicted RBP23.71■■□□□ 1.39
CLN3-262ENST00000637699 TLR7Q9NYK1 1049 aaKnown RBP23.71■■□□□ 1.39
CLN3-262ENST00000637699 DBNLQ9UJU6 430 aaKnown RBP23.71■■□□□ 1.39
CLN3-262ENST00000637699 IDH1O75874 414 aaKnown RBP23.7■■□□□ 1.38
CLN3-262ENST00000637699 USP5P45974 858 aa23.7■■□□□ 1.38
CLN3-262ENST00000637699 ZKSCAN2Q63HK3 967 aa23.7■■□□□ 1.38
CLN3-262ENST00000637699 FEZ1Q99689 392 aa23.7■■□□□ 1.38
CLN3-262ENST00000637699 LHX8Q68G74 356 aa23.69■■□□□ 1.38
CLN3-262ENST00000637699 TDHQ8IZJ6 230 aa23.69■■□□□ 1.38
CLN3-262ENST00000637699 DEFB123Q8N688 67 aa23.69■■□□□ 1.38
CLN3-262ENST00000637699 APBA2Q99767 749 aa23.69■■□□□ 1.38
CLN3-262ENST00000637699 UBE2OQ9C0C9 1292 aaKnown RBP23.69■■□□□ 1.38
CLN3-262ENST00000637699 NDUFB9Q9Y6M9 179 aa23.69■■□□□ 1.38
CLN3-262ENST00000637699 USP17L15C9J2P7 530 aa23.68■■□□□ 1.38
CLN3-262ENST00000637699 USP17L13C9JLJ4 530 aa23.68■■□□□ 1.38
CLN3-262ENST00000637699 USP17L11C9JVI0 530 aa23.68■■□□□ 1.38
CLN3-262ENST00000637699 USP17L18D6R9N7 530 aa23.68■■□□□ 1.38
CLN3-262ENST00000637699 USP17L22D6RA61 530 aa23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms