RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 GDF11O95390 407 aa22.72■■□□□ 1.23
SQSTM1-216ENST00000626660 VEGFBP49765 207 aa22.72■■□□□ 1.23
SQSTM1-216ENST00000626660 PDE4BQ07343 736 aa22.72■■□□□ 1.23
SQSTM1-216ENST00000626660 STK11IPQ8N1F8 1099 aa22.72■■□□□ 1.23
SQSTM1-216ENST00000626660 OPTNQ96CV9 577 aa22.72■■□□□ 1.23
SQSTM1-216ENST00000626660 WNK4Q96J92 1243 aa22.72■■□□□ 1.23
SQSTM1-216ENST00000626660 CABP5Q9NP86 173 aa22.72■■□□□ 1.23
SQSTM1-216ENST00000626660 ANAPC4Q9UJX5 808 aa22.72■■□□□ 1.23
SQSTM1-216ENST00000626660 WDR33Q9C0J8 1336 aaKnown RBP22.72■■□□□ 1.23
SQSTM1-216ENST00000626660 LAMA4Q16363 1823 aa22.71■■□□□ 1.23
SQSTM1-216ENST00000626660 SPDYE5A6NIY4 337 aa22.71■■□□□ 1.23
SQSTM1-216ENST00000626660 SMIM22K7EJ46 135 aa22.71■■□□□ 1.23
SQSTM1-216ENST00000626660 ASNSP08243 561 aa22.71■■□□□ 1.23
SQSTM1-216ENST00000626660 ZBTB48P10074 688 aaPredicted RBP22.71■■□□□ 1.23
SQSTM1-216ENST00000626660 NOGQ13253 232 aa22.71■■□□□ 1.23
SQSTM1-216ENST00000626660 ABCB5Q2M3G0 1257 aa22.71■■□□□ 1.23
SQSTM1-216ENST00000626660 SPRYD7Q5W111 196 aa22.71■■□□□ 1.23
SQSTM1-216ENST00000626660 OTUD5Q96G74 571 aa22.71■■□□□ 1.23
SQSTM1-216ENST00000626660 CCDC17Q96LX7 622 aa22.71■■□□□ 1.23
SQSTM1-216ENST00000626660 ANO2Q9NQ90 1003 aa22.71■■□□□ 1.23
SQSTM1-216ENST00000626660 U3KPZ7 1027 aaPredicted RBP22.71■■□□□ 1.23
SQSTM1-216ENST00000626660 MPHOSPH10O00566 681 aaKnown RBP22.7■■□□□ 1.22
SQSTM1-216ENST00000626660 ZNF213O14771 459 aa22.7■■□□□ 1.22
SQSTM1-216ENST00000626660 PTH1RQ03431 593 aa22.7■■□□□ 1.22
SQSTM1-216ENST00000626660 CTDSPL2Q05D32 466 aa22.7■■□□□ 1.22
SQSTM1-216ENST00000626660 PPATQ06203 517 aa22.7■■□□□ 1.22
SQSTM1-216ENST00000626660 RRP1BQ14684 758 aaKnown RBP22.7■■□□□ 1.22
SQSTM1-216ENST00000626660 IMMTQ16891 758 aaKnown RBP22.7■■□□□ 1.22
SQSTM1-216ENST00000626660 ZBTB21Q9ULJ3 1066 aa22.7■■□□□ 1.22
SQSTM1-216ENST00000626660 FAM155AB1AL88 458 aaPredicted RBP22.69■■□□□ 1.22
SQSTM1-216ENST00000626660 GH2P01242 217 aa22.69■■□□□ 1.22
SQSTM1-216ENST00000626660 PTPRAP18433 802 aa22.69■■□□□ 1.22
SQSTM1-216ENST00000626660 HAND2P61296 217 aa22.69■■□□□ 1.22
SQSTM1-216ENST00000626660 PPIL2Q13356 520 aa22.69■■□□□ 1.22
SQSTM1-216ENST00000626660 MKRN3Q13064 507 aaKnown RBP22.68■■□□□ 1.22
SQSTM1-216ENST00000626660 ZNF444Q8N0Y2 327 aaPredicted RBP22.68■■□□□ 1.22
SQSTM1-216ENST00000626660 CNKSR2Q8WXI2 1034 aa22.68■■□□□ 1.22
SQSTM1-216ENST00000626660 TBC1D2Q9BYX2 928 aa22.68■■□□□ 1.22
SQSTM1-216ENST00000626660 LSG1Q9H089 658 aaKnown RBP22.68■■□□□ 1.22
SQSTM1-216ENST00000626660 ZHX2Q9Y6X8 837 aa22.68■■□□□ 1.22
SQSTM1-216ENST00000626660 USP17L5A8MUK1 530 aa22.67■■□□□ 1.22
SQSTM1-216ENST00000626660 PRDM1O75626 825 aa22.67■■□□□ 1.22
SQSTM1-216ENST00000626660 MAP4K1Q92918 833 aa22.67■■□□□ 1.22
SQSTM1-216ENST00000626660 RNF41Q9H4P4 317 aaPredicted RBP22.67■■□□□ 1.22
SQSTM1-216ENST00000626660 AS3MTQ9HBK9 375 aa22.67■■□□□ 1.22
SQSTM1-216ENST00000626660 AOC2O75106 756 aa22.66■■□□□ 1.22
SQSTM1-216ENST00000626660 REC8O95072 547 aa22.66■■□□□ 1.22
SQSTM1-216ENST00000626660 PCP11498 1178 aaKnown RBP22.66■■□□□ 1.22
SQSTM1-216ENST00000626660 RASA1P20936 1047 aa22.66■■□□□ 1.22
SQSTM1-216ENST00000626660 GJA5P36382 358 aa22.66■■□□□ 1.22
SQSTM1-216ENST00000626660 MAP2K2P36507 400 aa22.66■■□□□ 1.22
SQSTM1-216ENST00000626660 RAB3GAP1Q15042 981 aa22.66■■□□□ 1.22
SQSTM1-216ENST00000626660 TMEM179Q6ZVK1 233 aa22.66■■□□□ 1.22
SQSTM1-216ENST00000626660 TOMM22Q9NS69 142 aa22.66■■□□□ 1.22
SQSTM1-216ENST00000626660 RBM8AQ9Y5S9 174 aaKnown RBP22.66■■□□□ 1.22
SQSTM1-216ENST00000626660 PHIPQ8WWQ0 1821 aa22.66■■□□□ 1.22
SQSTM1-216ENST00000626660 AKR1B1P15121 316 aa22.65■■□□□ 1.22
SQSTM1-216ENST00000626660 JAG1P78504 1218 aa22.65■■□□□ 1.22
SQSTM1-216ENST00000626660 SNAPC2Q13487 334 aa22.65■■□□□ 1.22
SQSTM1-216ENST00000626660 SHROOM1Q2M3G4 852 aaPredicted RBP22.65■■□□□ 1.22
SQSTM1-216ENST00000626660 AKNAD1Q5T1N1 836 aa22.65■■□□□ 1.22
SQSTM1-216ENST00000626660 MFSD6Q6ZSS7 791 aa22.65■■□□□ 1.22
SQSTM1-216ENST00000626660 FRMD4AQ9P2Q2 1039 aaPredicted RBP22.65■■□□□ 1.22
SQSTM1-216ENST00000626660 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.65■■□□□ 1.225e-7■■■□□ 16.2
SQSTM1-216ENST00000626660 MANSC4A6NHS7 340 aaPredicted RBP22.64■■□□□ 1.21
SQSTM1-216ENST00000626660 IRF6O14896 467 aa22.64■■□□□ 1.21
SQSTM1-216ENST00000626660 FOXN1O15353 648 aa22.64■■□□□ 1.21
SQSTM1-216ENST00000626660 ORC4O43929 436 aa22.64■■□□□ 1.21
SQSTM1-216ENST00000626660 CTCFP49711 727 aaPredicted RBP22.64■■□□□ 1.21
SQSTM1-216ENST00000626660 GTF2A2P52657 109 aa22.64■■□□□ 1.21
SQSTM1-216ENST00000626660 KIF23Q02241 960 aaPredicted RBP22.64■■□□□ 1.21
SQSTM1-216ENST00000626660 CCDC84Q86UT8 332 aaPredicted RBP22.64■■□□□ 1.21
SQSTM1-216ENST00000626660 REM2Q8IYK8 340 aaPredicted RBP22.64■■□□□ 1.21
SQSTM1-216ENST00000626660 STAG1Q8WVM7 1258 aa22.64■■□□□ 1.21
SQSTM1-216ENST00000626660 THSD7BQ9C0I4 1608 aa22.64■■□□□ 1.21
SQSTM1-216ENST00000626660 CXCL11O14625 94 aa22.63■■□□□ 1.21
SQSTM1-216ENST00000626660 EIF5BO60841 1220 aaKnown RBP22.63■■□□□ 1.21
SQSTM1-216ENST00000626660 TSPY3P0CV98 308 aa22.63■■□□□ 1.21
SQSTM1-216ENST00000626660 TSPY8P0CW00 308 aa22.63■■□□□ 1.21
SQSTM1-216ENST00000626660 SREBF2Q12772 1141 aa22.63■■□□□ 1.21
SQSTM1-216ENST00000626660 SEPT2Q15019 361 aa22.63■■□□□ 1.21
SQSTM1-216ENST00000626660 TBC1D10CQ8IV04 446 aa22.63■■□□□ 1.21
SQSTM1-216ENST00000626660 ZNF280CQ8ND82 737 aa22.63■■□□□ 1.21
SQSTM1-216ENST00000626660 WDR18Q9BV38 432 aa22.63■■□□□ 1.21
SQSTM1-216ENST00000626660 NBPF3Q9H094 633 aa22.63■■□□□ 1.21
SQSTM1-216ENST00000626660 PRDM10Q9NQV6 1147 aa22.63■■□□□ 1.21
SQSTM1-216ENST00000626660 KCNH4Q9UQ05 1017 aa22.63■■□□□ 1.21
SQSTM1-216ENST00000626660 AFG3L2Q9Y4W6 797 aa22.63■■□□□ 1.21
SQSTM1-216ENST00000626660 TRIM75PA6NK02 468 aa22.62■■□□□ 1.21
SQSTM1-216ENST00000626660 RANBP6O60518 1105 aaKnown RBP22.62■■□□□ 1.21
SQSTM1-216ENST00000626660 FGRP09769 529 aa22.62■■□□□ 1.21
SQSTM1-216ENST00000626660 CETPP11597 493 aa22.62■■□□□ 1.21
SQSTM1-216ENST00000626660 INHBEP58166 350 aa22.62■■□□□ 1.21
SQSTM1-216ENST00000626660 RRP12Q5JTH9 1297 aaKnown RBP22.62■■□□□ 1.21
SQSTM1-216ENST00000626660 CCL15-CCL14A0A0B4J2E2 113 aa22.61■■□□□ 1.21
SQSTM1-216ENST00000626660 TSPY2A6NKD2 308 aa22.61■■□□□ 1.21
SQSTM1-216ENST00000626660 NT5C2P49902 561 aa22.61■■□□□ 1.21
SQSTM1-216ENST00000626660 TFAP4Q01664 338 aa22.61■■□□□ 1.21
SQSTM1-216ENST00000626660 SPP2Q13103 211 aa22.61■■□□□ 1.21
SQSTM1-216ENST00000626660 CCL15Q16663 113 aa22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms