RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 ZNF274Q96GC6 653 aaPredicted RBP9.89□□□□□ -0.83
VCL-206ENST00000623461 RIMS2Q9UQ26 1411 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 PNOCQ13519 176 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 DBN1Q16643 649 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 ANKRD20A3Q5VUR7 823 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 GDAP1L1Q96MZ0 367 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 BAG3O95817 575 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 TRAF1Q13077 416 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 SLC9C2Q5TAH2 1124 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 TEX13AQ9BXU3 409 aaPredicted RBP9.89□□□□□ -0.83
VCL-206ENST00000623461 POLKQ9UBT6 870 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 TPX2Q9ULW0 747 aaKnown RBP9.89□□□□□ -0.83
VCL-206ENST00000623461 TRIM35Q9UPQ4 493 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 FLOT1O75955 427 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 TNFAIP3P21580 790 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 ERCC5P28715 1186 aaPredicted RBP9.89□□□□□ -0.83
VCL-206ENST00000623461 CASP8Q14790 479 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 NBPF9Q3BBW0 867 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 SHROOM2Q13796 1616 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 GNA11P29992 359 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 GUCY2FP51841 1108 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 HS2ST1Q7LGA3 356 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 TRMT112Q9UI30 125 aaKnown RBP9.89□□□□□ -0.83
VCL-206ENST00000623461 CCDC169A6NNP5 214 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 LONRF3Q496Y0 759 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 SFMBT2Q5VUG0 894 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 CNOT10Q9H9A5 744 aaKnown RBP9.89□□□□□ -0.83
VCL-206ENST00000623461 ANGEL1Q9UNK9 670 aaKnown RBP9.89□□□□□ -0.83
VCL-206ENST00000623461 SPATA31E1Q6ZUB1 1445 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 FRMD3A2A2Y4 597 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 EPB41P11171 864 aaKnown RBP9.89□□□□□ -0.83
VCL-206ENST00000623461 EEF2P13639 858 aaKnown RBP9.89□□□□□ -0.83
VCL-206ENST00000623461 GUCY2CP25092 1073 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 DNM2P50570 870 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 NAPAP54920 295 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 MYSM1Q5VVJ2 828 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 SPATA1Q5VX52 437 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 PLCB3Q01970 1234 aa9.88□□□□□ -0.83
VCL-206ENST00000623461 ZSCAN29Q8IWY8 852 aaPredicted RBP9.88□□□□□ -0.83
VCL-206ENST00000623461 SAAL1Q96ER3 474 aa9.88□□□□□ -0.83
VCL-206ENST00000623461 TRAF5O00463 557 aa9.88□□□□□ -0.83
VCL-206ENST00000623461 NCAPGQ9BPX3 1015 aa9.88□□□□□ -0.83
VCL-206ENST00000623461 JAK2O60674 1132 aa9.88□□□□□ -0.83
VCL-206ENST00000623461 PEX26Q7Z412 305 aa9.88□□□□□ -0.83
VCL-206ENST00000623461 THEMISQ8N1K5 641 aaPredicted RBP9.88□□□□□ -0.83
VCL-206ENST00000623461 TRIM6Q9C030 488 aaPredicted RBP9.88□□□□□ -0.83
VCL-206ENST00000623461 EPN1Q9Y6I3 576 aaPredicted RBP9.88□□□□□ -0.83
VCL-206ENST00000623461 PSMC4P43686 418 aa9.88□□□□□ -0.83
VCL-206ENST00000623461 RNASE9P60153 205 aaKnown RBP9.88□□□□□ -0.83
VCL-206ENST00000623461 ZNF174Q15697 407 aa9.88□□□□□ -0.83
VCL-206ENST00000623461 P3H4Q92791 437 aa9.88□□□□□ -0.83
VCL-206ENST00000623461 I3L4J1 428 aa9.88□□□□□ -0.83
VCL-206ENST00000623461 TXNDC9O14530 226 aa9.88□□□□□ -0.83
VCL-206ENST00000623461 OPHN1O60890 802 aa9.88□□□□□ -0.83
VCL-206ENST00000623461 CCDC152Q4G0S7 254 aa9.88□□□□□ -0.83
VCL-206ENST00000623461 SLC35F6Q8N357 371 aa9.88□□□□□ -0.83
VCL-206ENST00000623461 NUF2Q9BZD4 464 aa9.88□□□□□ -0.83
VCL-206ENST00000623461 RNF14Q9UBS8 474 aa9.88□□□□□ -0.83
VCL-206ENST00000623461 SCOCQ9UIL1 159 aa9.88□□□□□ -0.83
VCL-206ENST00000623461 SPOPO43791 374 aa9.88□□□□□ -0.83
VCL-206ENST00000623461 VAT1LQ9HCJ6 419 aa9.88□□□□□ -0.83
VCL-206ENST00000623461 TXNDC16Q9P2K2 825 aa9.88□□□□□ -0.83
VCL-206ENST00000623461 PFKFB2O60825 505 aa9.87□□□□□ -0.83
VCL-206ENST00000623461 KCNJ18B7U540 433 aa9.87□□□□□ -0.83
VCL-206ENST00000623461 RNASELQ05823 741 aaKnown RBP9.87□□□□□ -0.83
VCL-206ENST00000623461 KCNJ12Q14500 433 aa9.87□□□□□ -0.83
VCL-206ENST00000623461 E2F5Q15329 346 aa9.87□□□□□ -0.83
VCL-206ENST00000623461 CYB5RLQ6IPT4 315 aa9.87□□□□□ -0.83
VCL-206ENST00000623461 USHBP1Q8N6Y0 703 aa9.87□□□□□ -0.83
VCL-206ENST00000623461 FANCLQ9NW38 375 aa9.87□□□□□ -0.83
VCL-206ENST00000623461 SAMM50Q9Y512 469 aa9.87□□□□□ -0.83
VCL-206ENST00000623461 H7C1D1 291 aa9.87□□□□□ -0.83
VCL-206ENST00000623461 GSTO1P78417 241 aa9.87□□□□□ -0.83
VCL-206ENST00000623461 TFCP2Q12800 502 aa9.87□□□□□ -0.83
VCL-206ENST00000623461 CCDC14Q49A88 953 aa9.87□□□□□ -0.83
VCL-206ENST00000623461 SDCCAG8Q86SQ7 713 aaPredicted RBP9.87□□□□□ -0.83
VCL-206ENST00000623461 DIS3L2Q8IYB7 885 aaKnown RBP9.87□□□□□ -0.83
VCL-206ENST00000623461 KIFAP3Q92845 792 aa9.87□□□□□ -0.83
VCL-206ENST00000623461 USP28Q96RU2 1077 aa9.87□□□□□ -0.83
VCL-206ENST00000623461 DSCC1Q9BVC3 393 aa9.87□□□□□ -0.83
VCL-206ENST00000623461 OSBPL3Q9H4L5 887 aa9.87□□□□□ -0.83
VCL-206ENST00000623461 PZPP20742 1482 aa9.87□□□□□ -0.83
VCL-206ENST00000623461 ATP5J2-PTCD1G3V325 749 aa9.87□□□□□ -0.83
VCL-206ENST00000623461 PTCD1O75127 700 aaKnown RBP9.87□□□□□ -0.83
VCL-206ENST00000623461 KRT40Q6A162 431 aa9.87□□□□□ -0.83
VCL-206ENST00000623461 MIER3Q7Z3K6 550 aa9.87□□□□□ -0.83
VCL-206ENST00000623461 CRACR2BQ8N4Y2 399 aaPredicted RBP9.87□□□□□ -0.83
VCL-206ENST00000623461 INF2Q27J81 1249 aa9.87□□□□□ -0.83
VCL-206ENST00000623461 CC2D1AQ6P1N0 951 aaPredicted RBP9.87□□□□□ -0.83
VCL-206ENST00000623461 CDC5LQ99459 802 aaKnown RBP9.87□□□□□ -0.83
VCL-206ENST00000623461 RTEL1Q9NZ71 1219 aa9.87□□□□□ -0.83
VCL-206ENST00000623461 KIAA0556O60303 1618 aa9.87□□□□□ -0.83
VCL-206ENST00000623461 CYP7A1P22680 504 aa9.87□□□□□ -0.83
VCL-206ENST00000623461 RFC1P35251 1148 aaPredicted RBP9.87□□□□□ -0.83
VCL-206ENST00000623461 KLHL30Q0D2K2 578 aa9.87□□□□□ -0.83
VCL-206ENST00000623461 KMT5BQ4FZB7 885 aa9.87□□□□□ -0.83
VCL-206ENST00000623461 TRMT44Q8IYL2 757 aaKnown RBP9.87□□□□□ -0.83
VCL-206ENST00000623461 TRIM31Q9BZY9 425 aa9.87□□□□□ -0.83
VCL-206ENST00000623461 NCOA5Q9HCD5 579 aaKnown RBP9.87□□□□□ -0.83
VCL-206ENST00000623461 SERTAD1Q9UHV2 236 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms