RNA–Protein interactions for RNA: ENST00000607020.5

SSBP4-214, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 3

Gene SSBP4, Length 504 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-214ENST00000607020 TBC1D9Q6ZT07 1266 aa18.48■□□□□ 0.55
SSBP4-214ENST00000607020 GPR142Q7Z601 462 aa18.48■□□□□ 0.55
SSBP4-214ENST00000607020 PLEKHH3Q7Z736 793 aa18.48■□□□□ 0.55
SSBP4-214ENST00000607020 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.48■□□□□ 0.552e-6■■■■□ 19.6
SSBP4-214ENST00000607020 API5Q9BZZ5 524 aaKnown RBP18.48■□□□□ 0.55
SSBP4-214ENST00000607020 PTPRFP10586 1907 aa18.48■□□□□ 0.55
SSBP4-214ENST00000607020 ALPK3Q96L96 1907 aa18.47■□□□□ 0.55
SSBP4-214ENST00000607020 IGSF3O75054 1194 aa18.47■□□□□ 0.55
SSBP4-214ENST00000607020 CCND3P30281 292 aaPredicted RBP18.47■□□□□ 0.55
SSBP4-214ENST00000607020 JAG1P78504 1218 aa18.47■□□□□ 0.55
SSBP4-214ENST00000607020 POTEEQ6S8J3 1075 aa18.47■□□□□ 0.55
SSBP4-214ENST00000607020 PI16Q6UXB8 463 aa18.47■□□□□ 0.55
SSBP4-214ENST00000607020 APBA2Q99767 749 aa18.47■□□□□ 0.55
SSBP4-214ENST00000607020 PORCNQ9H237 461 aa18.47■□□□□ 0.55
SSBP4-214ENST00000607020 RAI14Q9P0K7 980 aa18.47■□□□□ 0.55
SSBP4-214ENST00000607020 NOB1Q9ULX3 412 aaKnown RBP18.47■□□□□ 0.55
SSBP4-214ENST00000607020 PEX10O60683 326 aa18.46■□□□□ 0.55
SSBP4-214ENST00000607020 CT47B1P0C2W7 299 aaPredicted RBP18.46■□□□□ 0.55
SSBP4-214ENST00000607020 PLCG2P16885 1265 aa18.46■□□□□ 0.55
SSBP4-214ENST00000607020 MDM2Q00987 491 aaPredicted RBP18.46■□□□□ 0.55
SSBP4-214ENST00000607020 CCL14Q16627 93 aa18.46■□□□□ 0.55
SSBP4-214ENST00000607020 SH3RF3Q8TEJ3 882 aaPredicted RBP18.46■□□□□ 0.55
SSBP4-214ENST00000607020 NEUROD6Q96NK8 337 aa18.46■□□□□ 0.55
SSBP4-214ENST00000607020 GUCD1Q96NT3 240 aa18.46■□□□□ 0.55
SSBP4-214ENST00000607020 MEIS3Q99687 375 aa18.46■□□□□ 0.55
SSBP4-214ENST00000607020 DNAJC18Q9H819 358 aa18.46■□□□□ 0.55
SSBP4-214ENST00000607020 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.46■□□□□ 0.55
SSBP4-214ENST00000607020 MYH2Q9UKX2 1941 aa18.45■□□□□ 0.54
SSBP4-214ENST00000607020 SRGAP3O43295 1099 aa18.45■□□□□ 0.54
SSBP4-214ENST00000607020 BAG3O95817 575 aa18.45■□□□□ 0.54
SSBP4-214ENST00000607020 CCAR1Q8IX12 1150 aaKnown RBP18.45■□□□□ 0.54
SSBP4-214ENST00000607020 TRMT2AQ8IZ69 625 aaKnown RBP18.45■□□□□ 0.54
SSBP4-214ENST00000607020 EMILIN3Q9NT22 766 aa18.45■□□□□ 0.54
SSBP4-214ENST00000607020 LRP2BPQ9P2M1 347 aa18.45■□□□□ 0.54
SSBP4-214ENST00000607020 RABGAP1Q9Y3P9 1069 aa18.45■□□□□ 0.54
SSBP4-214ENST00000607020 LOC285556D6RIA3 1793 aa18.45■□□□□ 0.54
SSBP4-214ENST00000607020 GNAI3P08754 354 aa18.44■□□□□ 0.54
SSBP4-214ENST00000607020 UQCRFS1P1P0C7P4 283 aa18.44■□□□□ 0.54
SSBP4-214ENST00000607020 MAP2K5Q13163 448 aa18.44■□□□□ 0.54
SSBP4-214ENST00000607020 GORABQ5T7V8 394 aa18.44■□□□□ 0.54
SSBP4-214ENST00000607020 USP17L2Q6R6M4 530 aa18.44■□□□□ 0.54
SSBP4-214ENST00000607020 EDC3Q96F86 508 aaKnown RBP18.44■□□□□ 0.54
SSBP4-214ENST00000607020 NOL10Q9BSC4 688 aaKnown RBP18.44■□□□□ 0.54
SSBP4-214ENST00000607020 MYH13Q9UKX3 1938 aa18.44■□□□□ 0.54
SSBP4-214ENST00000607020 MSCO60682 206 aa18.43■□□□□ 0.54
SSBP4-214ENST00000607020 HOXC6P09630 235 aa18.43■□□□□ 0.54
SSBP4-214ENST00000607020 MCAMP43121 646 aa18.43■□□□□ 0.54
SSBP4-214ENST00000607020 MFSD14CQ5VZR4 134 aa18.43■□□□□ 0.54
SSBP4-214ENST00000607020 C12orf42Q96LP6 360 aa18.43■□□□□ 0.54
SSBP4-214ENST00000607020 LBHD1Q9BQE6 289 aaPredicted RBP18.43■□□□□ 0.54
SSBP4-214ENST00000607020 ZBTB21Q9ULJ3 1066 aa18.43■□□□□ 0.54
SSBP4-214ENST00000607020 UNC80Q8N2C7 3258 aa18.43■□□□□ 0.54
SSBP4-214ENST00000607020 GLRX3O76003 335 aaKnown RBP18.42■□□□□ 0.54
SSBP4-214ENST00000607020 IGHA2P01877 340 aa18.42■□□□□ 0.54
SSBP4-214ENST00000607020 CCNA1P78396 465 aa18.42■□□□□ 0.54
SSBP4-214ENST00000607020 NAA16Q6N069 864 aaPredicted RBP18.42■□□□□ 0.54
SSBP4-214ENST00000607020 TGFBRAP1Q8WUH2 860 aa18.42■□□□□ 0.54
SSBP4-214ENST00000607020 ARHGAP45Q92619 1136 aa18.42■□□□□ 0.54
SSBP4-214ENST00000607020 LPAR1Q92633 364 aa18.42■□□□□ 0.54
SSBP4-214ENST00000607020 SENP6Q9GZR1 1112 aaPredicted RBP18.42■□□□□ 0.54
SSBP4-214ENST00000607020 AATFQ9NY61 560 aaKnown RBP eCLIP18.42■□□□□ 0.54
SSBP4-214ENST00000607020 DDX60LQ5H9U9 1706 aaKnown RBP18.42■□□□□ 0.54
SSBP4-214ENST00000607020 SLC15A5A6NIM6 579 aa18.41■□□□□ 0.54
SSBP4-214ENST00000607020 CNMDO75829 334 aa18.41■□□□□ 0.54
SSBP4-214ENST00000607020 LBX2Q6XYB7 198 aa18.41■□□□□ 0.54
SSBP4-214ENST00000607020 CRACR2BQ8N4Y2 399 aaPredicted RBP18.41■□□□□ 0.54
SSBP4-214ENST00000607020 PAGR1Q9BTK6 254 aa18.41■□□□□ 0.54
SSBP4-214ENST00000607020 DDX20Q9UHI6 824 aaKnown RBP18.41■□□□□ 0.54
SSBP4-214ENST00000607020 FLT1P17948 1338 aa18.41■□□□□ 0.54
SSBP4-214ENST00000607020 PLXNB2O15031 1838 aa18.4■□□□□ 0.54
SSBP4-214ENST00000607020 USP17L15C9J2P7 530 aa18.4■□□□□ 0.54
SSBP4-214ENST00000607020 USP17L13C9JLJ4 530 aa18.4■□□□□ 0.54
SSBP4-214ENST00000607020 USP17L11C9JVI0 530 aa18.4■□□□□ 0.54
SSBP4-214ENST00000607020 USP17L18D6R9N7 530 aa18.4■□□□□ 0.54
SSBP4-214ENST00000607020 USP17L22D6RA61 530 aa18.4■□□□□ 0.54
SSBP4-214ENST00000607020 USP17L17D6RBQ6 530 aa18.4■□□□□ 0.54
SSBP4-214ENST00000607020 USP17L19D6RCP7 530 aa18.4■□□□□ 0.54
SSBP4-214ENST00000607020 USP17L20D6RJB6 530 aa18.4■□□□□ 0.54
SSBP4-214ENST00000607020 DNM1LO00429 736 aa18.4■□□□□ 0.54
SSBP4-214ENST00000607020 PTPREP23469 700 aa18.4■□□□□ 0.54
SSBP4-214ENST00000607020 USP17L24Q0WX57 530 aa18.4■□□□□ 0.54
SSBP4-214ENST00000607020 SHROOM1Q2M3G4 852 aaPredicted RBP18.4■□□□□ 0.54
SSBP4-214ENST00000607020 ATF7IPQ6VMQ6 1270 aa18.4■□□□□ 0.54
SSBP4-214ENST00000607020 MAPKAPK5Q8IW41 473 aa18.4■□□□□ 0.54
SSBP4-214ENST00000607020 CDCA7LQ96GN5 454 aa18.4■□□□□ 0.54
SSBP4-214ENST00000607020 TRIM34Q9BYJ4 488 aa18.4■□□□□ 0.54
SSBP4-214ENST00000607020 FLRT1Q9NZU1 646 aa18.4■□□□□ 0.54
SSBP4-214ENST00000607020 PALD1Q9ULE6 856 aa18.4■□□□□ 0.54
SSBP4-214ENST00000607020 GDF11O95390 407 aa18.39■□□□□ 0.53
SSBP4-214ENST00000607020 ZNF697Q5TEC3 545 aa18.39■□□□□ 0.53
SSBP4-214ENST00000607020 CATSPERGQ6ZRH7 1159 aa18.39■□□□□ 0.53
SSBP4-214ENST00000607020 GPR108Q9NPR9 543 aa18.39■□□□□ 0.53
SSBP4-214ENST00000607020 HLA-DOAP06340 250 aa18.38■□□□□ 0.53
SSBP4-214ENST00000607020 USP14P54578 494 aa18.38■□□□□ 0.53
SSBP4-214ENST00000607020 G3BP1Q13283 466 aaKnown RBP eCLIP18.38■□□□□ 0.53
SSBP4-214ENST00000607020 GRB14Q14449 540 aa18.38■□□□□ 0.53
SSBP4-214ENST00000607020 DIEXFQ68CQ4 756 aaKnown RBP18.38■□□□□ 0.53
SSBP4-214ENST00000607020 TATDN1Q6P1N9 297 aa18.38■□□□□ 0.53
SSBP4-214ENST00000607020 ADGRA1Q86SQ6 560 aa18.38■□□□□ 0.53
SSBP4-214ENST00000607020 ZNF512BQ96KM6 892 aaPredicted RBP18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms