RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 GNRH1P01148 92 aa17■□□□□ 0.31
LIG1-218ENST00000599322 OSBPP22059 807 aa17■□□□□ 0.31
LIG1-218ENST00000599322 LCORLQ8N3X6 602 aa17■□□□□ 0.31
LIG1-218ENST00000599322 WDR18Q9BV38 432 aa17■□□□□ 0.31
LIG1-218ENST00000599322 AGTPBP1Q9UPW5 1226 aa17■□□□□ 0.31
LIG1-218ENST00000599322 PTPN22Q9Y2R2 807 aa17■□□□□ 0.31
LIG1-218ENST00000599322 MYO5AQ9Y4I1 1855 aaKnown RBP17■□□□□ 0.31
LIG1-218ENST00000599322 SLC4A4Q9Y6R1 1079 aa17■□□□□ 0.31
LIG1-218ENST00000599322 GDF11O95390 407 aa16.99■□□□□ 0.31
LIG1-218ENST00000599322 ABCB5Q2M3G0 1257 aa16.99■□□□□ 0.31
LIG1-218ENST00000599322 SDR42E1Q8WUS8 393 aa16.99■□□□□ 0.31
LIG1-218ENST00000599322 FEZ1Q99689 392 aa16.99■□□□□ 0.31
LIG1-218ENST00000599322 FSD1Q9BTV5 496 aa16.99■□□□□ 0.31
LIG1-218ENST00000599322 DCP1AQ9NPI6 582 aaPredicted RBP16.99■□□□□ 0.31
LIG1-218ENST00000599322 SWAP70Q9UH65 585 aa16.99■□□□□ 0.31
LIG1-218ENST00000599322 CPA4Q9UI42 421 aa16.99■□□□□ 0.31
LIG1-218ENST00000599322 ZBTB21Q9ULJ3 1066 aa16.99■□□□□ 0.31
LIG1-218ENST00000599322 POTEFA5A3E0 1075 aa16.98■□□□□ 0.31
LIG1-218ENST00000599322 USP17L10C9JJH3 530 aa16.98■□□□□ 0.31
LIG1-218ENST00000599322 RNF113AO15541 343 aaKnown RBP16.98■□□□□ 0.31
LIG1-218ENST00000599322 GNAT2P19087 354 aa16.98■□□□□ 0.31
LIG1-218ENST00000599322 HMGCS2P54868 508 aa16.98■□□□□ 0.31
LIG1-218ENST00000599322 PRMT2P55345 433 aa16.98■□□□□ 0.31
LIG1-218ENST00000599322 TSHZ3Q63HK5 1081 aa16.98■□□□□ 0.31
LIG1-218ENST00000599322 GPAT2Q6NUI2 795 aa16.98■□□□□ 0.31
LIG1-218ENST00000599322 TATDN1Q6P1N9 297 aa16.98■□□□□ 0.31
LIG1-218ENST00000599322 CCDC84Q86UT8 332 aaPredicted RBP16.98■□□□□ 0.31
LIG1-218ENST00000599322 APPBP2Q92624 585 aa16.98■□□□□ 0.31
LIG1-218ENST00000599322 DOCK1Q14185 1865 aa16.98■□□□□ 0.31
LIG1-218ENST00000599322 MPHOSPH10O00566 681 aaKnown RBP16.97■□□□□ 0.31
LIG1-218ENST00000599322 FMNL1O95466 1100 aaPredicted RBP16.97■□□□□ 0.31
LIG1-218ENST00000599322 GH2P01242 217 aa16.97■□□□□ 0.31
LIG1-218ENST00000599322 BACE1P56817 501 aa16.97■□□□□ 0.31
LIG1-218ENST00000599322 LACTBP83111 547 aaPredicted RBP16.97■□□□□ 0.31
LIG1-218ENST00000599322 RAB3GAP1Q15042 981 aa16.97■□□□□ 0.31
LIG1-218ENST00000599322 C17orf99Q6UX52 265 aa16.97■□□□□ 0.31
LIG1-218ENST00000599322 NBPF11Q86T75 865 aa16.97■□□□□ 0.31
LIG1-218ENST00000599322 EXOC6Q8TAG9 804 aa16.97■□□□□ 0.31
LIG1-218ENST00000599322 APPP05067 770 aa16.96■□□□□ 0.31
LIG1-218ENST00000599322 CYP2C8P10632 490 aa16.96■□□□□ 0.31
LIG1-218ENST00000599322 GCLCP48506 637 aaPredicted RBP16.96■□□□□ 0.31
LIG1-218ENST00000599322 PLCD1P51178 756 aa16.96■□□□□ 0.31
LIG1-218ENST00000599322 USP14P54578 494 aa16.96■□□□□ 0.31
LIG1-218ENST00000599322 IRX3P78415 501 aaPredicted RBP16.96■□□□□ 0.31
LIG1-218ENST00000599322 MTMR2Q13614 643 aa16.96■□□□□ 0.31
LIG1-218ENST00000599322 MOGSQ13724 837 aa16.96■□□□□ 0.31
LIG1-218ENST00000599322 SH3D19Q5HYK7 790 aa16.96■□□□□ 0.31
LIG1-218ENST00000599322 USP17L2Q6R6M4 530 aa16.96■□□□□ 0.31
LIG1-218ENST00000599322 NACAP1Q9BZK3 213 aa16.96■□□□□ 0.31
LIG1-218ENST00000599322 DNAJC18Q9H819 358 aa16.96■□□□□ 0.31
LIG1-218ENST00000599322 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.96■□□□□ 0.31
LIG1-218ENST00000599322 MYH1P12882 1939 aa16.96■□□□□ 0.3
LIG1-218ENST00000599322 MGAMO43451 1857 aa16.95■□□□□ 0.3
LIG1-218ENST00000599322 PSMC4P43686 418 aa16.95■□□□□ 0.3
LIG1-218ENST00000599322 FCGRTP55899 365 aa16.95■□□□□ 0.3
LIG1-218ENST00000599322 RRP1BQ14684 758 aaKnown RBP16.95■□□□□ 0.3
LIG1-218ENST00000599322 B4GALNT3Q6L9W6 998 aa16.95■□□□□ 0.3
LIG1-218ENST00000599322 ARMC5Q96C12 935 aa16.95■□□□□ 0.3
LIG1-218ENST00000599322 CCDC17Q96LX7 622 aa16.95■□□□□ 0.3
LIG1-218ENST00000599322 PUS7LQ9H0K6 701 aaKnown RBP16.95■□□□□ 0.3
LIG1-218ENST00000599322 ZNF287Q9HBT7 754 aa16.95■□□□□ 0.3
LIG1-218ENST00000599322 ARPP21Q9UBL0 812 aaPredicted RBP16.95■□□□□ 0.3
LIG1-218ENST00000599322 FOCADQ5VW36 1801 aa16.95■□□□□ 0.3
LIG1-218ENST00000599322 PTPRFP10586 1907 aa16.94■□□□□ 0.3
LIG1-218ENST00000599322 USP17L12C9JPN9 530 aa16.94■□□□□ 0.3
LIG1-218ENST00000599322 USP17L21D6R901 530 aa16.94■□□□□ 0.3
LIG1-218ENST00000599322 PRKAB2O43741 272 aa16.94■□□□□ 0.3
LIG1-218ENST00000599322 GIMAP6Q6P9H5 292 aa16.94■□□□□ 0.3
LIG1-218ENST00000599322 EVI5LQ96CN4 794 aa16.94■□□□□ 0.3
LIG1-218ENST00000599322 TDO2P48775 406 aa16.93■□□□□ 0.3
LIG1-218ENST00000599322 SLFNL1Q499Z3 407 aa16.93■□□□□ 0.3
LIG1-218ENST00000599322 C12orf60Q5U649 245 aa16.93■□□□□ 0.3
LIG1-218ENST00000599322 TMEM179Q6ZVK1 233 aa16.93■□□□□ 0.3
LIG1-218ENST00000599322 CCAR1Q8IX12 1150 aaKnown RBP16.93■□□□□ 0.3
LIG1-218ENST00000599322 PI4K2BQ8TCG2 481 aa16.93■□□□□ 0.3
LIG1-218ENST00000599322 GTF3C2Q8WUA4 911 aaPredicted RBP16.93■□□□□ 0.3
LIG1-218ENST00000599322 STRBPQ96SI9 672 aaKnown RBP16.93■□□□□ 0.3
LIG1-218ENST00000599322 LNPKQ9C0E8 428 aa16.93■□□□□ 0.3
LIG1-218ENST00000599322 SH2D4AQ9H788 454 aa16.93■□□□□ 0.3
LIG1-218ENST00000599322 STAP2Q9UGK3 403 aa16.93■□□□□ 0.3
LIG1-218ENST00000599322 CDK5RAP2Q96SN8 1893 aa16.93■□□□□ 0.3
LIG1-218ENST00000599322 PHIPQ8WWQ0 1821 aa16.92■□□□□ 0.3
LIG1-218ENST00000599322 GPAA1O43292 621 aa16.92■□□□□ 0.3
LIG1-218ENST00000599322 ECM2O94769 699 aaPredicted RBP16.92■□□□□ 0.3
LIG1-218ENST00000599322 SLC3A2P08195 630 aaKnown RBP16.92■□□□□ 0.3
LIG1-218ENST00000599322 SHMT1P34896 483 aa16.92■□□□□ 0.3
LIG1-218ENST00000599322 PDE1AP54750 535 aa16.92■□□□□ 0.3
LIG1-218ENST00000599322 GABPAQ06546 454 aa16.92■□□□□ 0.3
LIG1-218ENST00000599322 SLC9C1Q4G0N8 1177 aa16.92■□□□□ 0.3
LIG1-218ENST00000599322 TREML2Q5T2D2 321 aa16.92■□□□□ 0.3
LIG1-218ENST00000599322 SMC5Q8IY18 1101 aa16.92■□□□□ 0.3
LIG1-218ENST00000599322 RAET1EQ8TD07 263 aa16.92■□□□□ 0.3
LIG1-218ENST00000599322 OTUD7AQ8TE49 926 aaPredicted RBP16.92■□□□□ 0.3
LIG1-218ENST00000599322 MKNK2Q9HBH9 465 aa16.92■□□□□ 0.3
LIG1-218ENST00000599322 ARHGEF10LQ9HCE6 1279 aa16.92■□□□□ 0.3
LIG1-218ENST00000599322 MINDY4BA8MYZ0 360 aa16.91■□□□□ 0.3
LIG1-218ENST00000599322 TRIM6-TRIM34B2RNG4 842 aa16.91■□□□□ 0.3
LIG1-218ENST00000599322 CYP2D6P10635 497 aa16.91■□□□□ 0.3
LIG1-218ENST00000599322 BCRP11274 1271 aa16.91■□□□□ 0.3
LIG1-218ENST00000599322 CHD1LQ86WJ1 897 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms