RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 TDO2P48775 406 aa13.18□□□□□ -0.3
CHD3-216ENST00000573936 PLCD1P51178 756 aa13.18□□□□□ -0.3
CHD3-216ENST00000573936 NMIQ13287 307 aaPredicted RBP13.18□□□□□ -0.3
CHD3-216ENST00000573936 C12orf60Q5U649 245 aa13.18□□□□□ -0.3
CHD3-216ENST00000573936 CTR9Q6PD62 1173 aa13.18□□□□□ -0.3
CHD3-216ENST00000573936 IFNL3Q8IZI9 196 aa13.18□□□□□ -0.3
CHD3-216ENST00000573936 RUFY2Q8WXA3 655 aa13.18□□□□□ -0.3
CHD3-216ENST00000573936 FAM227BQ96M60 508 aa13.18□□□□□ -0.3
CHD3-216ENST00000573936 SWAP70Q9UH65 585 aa13.18□□□□□ -0.3
CHD3-216ENST00000573936 A0A0D9SFI3 127 aa13.17□□□□□ -0.3
CHD3-216ENST00000573936 FAM196BA6NMK8 535 aa13.17□□□□□ -0.3
CHD3-216ENST00000573936 GTF2A2P52657 109 aa13.17□□□□□ -0.3
CHD3-216ENST00000573936 GABPAQ06546 454 aa13.17□□□□□ -0.3
CHD3-216ENST00000573936 PPIL2Q13356 520 aa13.17□□□□□ -0.3
CHD3-216ENST00000573936 SLC4A8Q2Y0W8 1093 aa13.17□□□□□ -0.3
CHD3-216ENST00000573936 TATDN1Q6P1N9 297 aa13.17□□□□□ -0.3
CHD3-216ENST00000573936 CWC27Q6UX04 472 aaKnown RBP13.17□□□□□ -0.3
CHD3-216ENST00000573936 OTUD5Q96G74 571 aa13.17□□□□□ -0.3
CHD3-216ENST00000573936 NAPBQ9H115 298 aa13.17□□□□□ -0.3
CHD3-216ENST00000573936 CDK5RAP2Q96SN8 1893 aa13.16□□□□□ -0.3
CHD3-216ENST00000573936 CCDC171Q6TFL3 1326 aa13.16□□□□□ -0.3
CHD3-216ENST00000573936 ASNSP08243 561 aa13.16□□□□□ -0.3
CHD3-216ENST00000573936 SLURP2P0DP57 97 aa13.16□□□□□ -0.3
CHD3-216ENST00000573936 PTPRAP18433 802 aa13.16□□□□□ -0.3
CHD3-216ENST00000573936 GJA5P36382 358 aa13.16□□□□□ -0.3
CHD3-216ENST00000573936 ALX1Q15699 326 aa13.16□□□□□ -0.3
CHD3-216ENST00000573936 CERKLQ49MI3 558 aaPredicted RBP13.16□□□□□ -0.3
CHD3-216ENST00000573936 BMP2KLQ5H9B9 411 aa13.16□□□□□ -0.3
CHD3-216ENST00000573936 OTUD7BQ6GQQ9 843 aa13.16□□□□□ -0.3
CHD3-216ENST00000573936 CCDC129Q6ZRS4 1044 aa13.16□□□□□ -0.3
CHD3-216ENST00000573936 DNAJC18Q9H819 358 aa13.16□□□□□ -0.3
CHD3-216ENST00000573936 AS3MTQ9HBK9 375 aa13.16□□□□□ -0.3
CHD3-216ENST00000573936 ZNF287Q9HBT7 754 aa13.16□□□□□ -0.3
CHD3-216ENST00000573936 CABP5Q9NP86 173 aa13.16□□□□□ -0.3
CHD3-216ENST00000573936 TRIM17Q9Y577 477 aa13.16□□□□□ -0.3
CHD3-216ENST00000573936 RAD50Q92878 1312 aa13.15□□□□□ -0.3
CHD3-216ENST00000573936 MYH1P12882 1939 aa13.15□□□□□ -0.3
CHD3-216ENST00000573936 NAV1Q8NEY1 1877 aa13.15□□□□□ -0.3
CHD3-216ENST00000573936 USP17L5A8MUK1 530 aa13.15□□□□□ -0.3
CHD3-216ENST00000573936 MINDY4BA8MYZ0 360 aa13.15□□□□□ -0.3
CHD3-216ENST00000573936 IGF2BP3O00425 579 aaKnown RBP eCLIP13.15□□□□□ -0.3
CHD3-216ENST00000573936 CXCL11O14625 94 aa13.15□□□□□ -0.3
CHD3-216ENST00000573936 SLC3A2P08195 630 aaKnown RBP13.15□□□□□ -0.3
CHD3-216ENST00000573936 CYP2D6P10635 497 aa13.15□□□□□ -0.3
CHD3-216ENST00000573936 CETPP11597 493 aa13.15□□□□□ -0.3
CHD3-216ENST00000573936 SNAPC2Q13487 334 aa13.15□□□□□ -0.3
CHD3-216ENST00000573936 C16orf86Q6ZW13 317 aa13.15□□□□□ -0.3
CHD3-216ENST00000573936 IFNL1Q8IU54 200 aa13.15□□□□□ -0.3
CHD3-216ENST00000573936 CCDC17Q96LX7 622 aa13.15□□□□□ -0.3
CHD3-216ENST00000573936 CFHR5Q9BXR6 569 aa13.15□□□□□ -0.3
CHD3-216ENST00000573936 TESPA1A2RU30 521 aaPredicted RBP13.14□□□□□ -0.31
CHD3-216ENST00000573936 HSPD1P10809 573 aaKnown RBP13.14□□□□□ -0.31
CHD3-216ENST00000573936 CHMLP26374 656 aa13.14□□□□□ -0.31
CHD3-216ENST00000573936 SHMT1P34896 483 aa13.14□□□□□ -0.31
CHD3-216ENST00000573936 CDK8P49336 464 aa13.14□□□□□ -0.31
CHD3-216ENST00000573936 ABCB5Q2M3G0 1257 aa13.14□□□□□ -0.31
CHD3-216ENST00000573936 ZNF589Q86UQ0 364 aaPredicted RBP13.14□□□□□ -0.31
CHD3-216ENST00000573936 CNKSR2Q8WXI2 1034 aa13.14□□□□□ -0.31
CHD3-216ENST00000573936 EPB41L4AQ9HCS5 686 aaPredicted RBP13.14□□□□□ -0.31
CHD3-216ENST00000573936 KCNH4Q9UQ05 1017 aa13.14□□□□□ -0.31
CHD3-216ENST00000573936 ZHX2Q9Y6X8 837 aa13.14□□□□□ -0.31
CHD3-216ENST00000573936 CYP2D7A0A087X1C5 515 aa13.13□□□□□ -0.31
CHD3-216ENST00000573936 IRF6O14896 467 aa13.13□□□□□ -0.31
CHD3-216ENST00000573936 GDF11O95390 407 aa13.13□□□□□ -0.31
CHD3-216ENST00000573936 PDE4BQ07343 736 aa13.13□□□□□ -0.31
CHD3-216ENST00000573936 RRP1BQ14684 758 aaKnown RBP13.13□□□□□ -0.31
CHD3-216ENST00000573936 HABP4Q5JVS0 413 aaKnown RBP13.13□□□□□ -0.31
CHD3-216ENST00000573936 DYNLL2Q96FJ2 89 aa13.13□□□□□ -0.31
CHD3-216ENST00000573936 ERO1AQ96HE7 468 aa13.13□□□□□ -0.31
CHD3-216ENST00000573936 MS4A4AQ96JQ5 239 aa13.13□□□□□ -0.31
CHD3-216ENST00000573936 DSCC1Q9BVC3 393 aa13.13□□□□□ -0.31
CHD3-216ENST00000573936 MKNK2Q9HBH9 465 aa13.13□□□□□ -0.31
CHD3-216ENST00000573936 AFG3L2Q9Y4W6 797 aa13.13□□□□□ -0.31
CHD3-216ENST00000573936 DDX60LQ5H9U9 1706 aaKnown RBP13.13□□□□□ -0.31
CHD3-216ENST00000573936 ZMYM6O95789 1325 aa13.13□□□□□ -0.31
CHD3-216ENST00000573936 ROBO3Q96MS0 1386 aa13.12□□□□□ -0.31
CHD3-216ENST00000573936 SIPA1L1O43166 1804 aa13.12□□□□□ -0.31
CHD3-216ENST00000573936 CCL15-CCL14A0A0B4J2E2 113 aa13.12□□□□□ -0.31
CHD3-216ENST00000573936 GH2P01242 217 aa13.12□□□□□ -0.31
CHD3-216ENST00000573936 FGAP02671 866 aa13.12□□□□□ -0.31
CHD3-216ENST00000573936 PPARAQ07869 468 aa13.12□□□□□ -0.31
CHD3-216ENST00000573936 CCL15Q16663 113 aa13.12□□□□□ -0.31
CHD3-216ENST00000573936 VPS53Q5VIR6 699 aa13.12□□□□□ -0.31
CHD3-216ENST00000573936 CASC1Q6TDU7 716 aa13.12□□□□□ -0.31
CHD3-216ENST00000573936 FASTKD5Q7L8L6 764 aaKnown RBP13.12□□□□□ -0.31
CHD3-216ENST00000573936 OTOP1Q7RTM1 612 aa13.12□□□□□ -0.31
CHD3-216ENST00000573936 ZNF280CQ8ND82 737 aa13.12□□□□□ -0.31
CHD3-216ENST00000573936 WDR18Q9BV38 432 aa13.12□□□□□ -0.31
CHD3-216ENST00000573936 CTNNA3Q9UI47 895 aa13.12□□□□□ -0.31
CHD3-216ENST00000573936 ZBTB21Q9ULJ3 1066 aa13.12□□□□□ -0.31
CHD3-216ENST00000573936 MPHOSPH10O00566 681 aaKnown RBP13.11□□□□□ -0.31
CHD3-216ENST00000573936 FOXP2O15409 715 aa13.11□□□□□ -0.31
CHD3-216ENST00000573936 CRHR2Q13324 411 aa13.11□□□□□ -0.31
CHD3-216ENST00000573936 ARHGEF6Q15052 776 aa13.11□□□□□ -0.31
CHD3-216ENST00000573936 TMEM179Q6ZVK1 233 aa13.11□□□□□ -0.31
CHD3-216ENST00000573936 SKAP1Q86WV1 359 aa13.11□□□□□ -0.31
CHD3-216ENST00000573936 ZNF444Q8N0Y2 327 aaPredicted RBP13.11□□□□□ -0.31
CHD3-216ENST00000573936 SLC44A5Q8NCS7 719 aa13.11□□□□□ -0.31
CHD3-216ENST00000573936 TMEM106CQ9BVX2 250 aa13.11□□□□□ -0.31
CHD3-216ENST00000573936 ZCCHC17Q9NP64 241 aaKnown RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms