RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 GTF2IRD1Q9UHL9 959 aa4.32□□□□□ -1.72
VPS35-208ENST00000568612 CCDC9Q9Y3X0 531 aaKnown RBP4.32□□□□□ -1.72
VPS35-208ENST00000568612 WASHC2CQ9Y4E1 1318 aa4.31□□□□□ -1.72
VPS35-208ENST00000568612 GNAT3A8MTJ3 354 aa4.31□□□□□ -1.72
VPS35-208ENST00000568612 TLR3O15455 904 aaKnown RBP4.31□□□□□ -1.72
VPS35-208ENST00000568612 ADAMTS4O75173 837 aa4.31□□□□□ -1.72
VPS35-208ENST00000568612 F13A1P00488 732 aa4.31□□□□□ -1.72
VPS35-208ENST00000568612 CANXP27824 592 aaKnown RBP4.31□□□□□ -1.72
VPS35-208ENST00000568612 LMNB2Q03252 620 aa4.31□□□□□ -1.72
VPS35-208ENST00000568612 MRPL58Q14197 206 aaKnown RBP4.31□□□□□ -1.72
VPS35-208ENST00000568612 NKG7Q16617 165 aa4.31□□□□□ -1.72
VPS35-208ENST00000568612 PRAMEF13Q5VWM6 474 aa4.31□□□□□ -1.72
VPS35-208ENST00000568612 HS2ST1Q7LGA3 356 aa4.31□□□□□ -1.72
VPS35-208ENST00000568612 VSIG10LQ86VR7 867 aa4.31□□□□□ -1.72
VPS35-208ENST00000568612 FTSJ3Q8IY81 847 aaKnown RBP4.31□□□□□ -1.72
VPS35-208ENST00000568612 CNPY4Q8N129 248 aa4.31□□□□□ -1.72
VPS35-208ENST00000568612 PSMG3-AS1Q96PY0 264 aa4.31□□□□□ -1.72
VPS35-208ENST00000568612 RSRP1Q9BUV0 290 aa4.31□□□□□ -1.72
VPS35-208ENST00000568612 CCDC39Q9UFE4 941 aa4.31□□□□□ -1.72
VPS35-208ENST00000568612 CORINQ9Y5Q5 1042 aa4.31□□□□□ -1.72
VPS35-208ENST00000568612 GFRA2O00451 464 aa4.3□□□□□ -1.72
VPS35-208ENST00000568612 GRIN3BO60391 1043 aa4.3□□□□□ -1.72
VPS35-208ENST00000568612 CLSTN1O94985 981 aa4.3□□□□□ -1.72
VPS35-208ENST00000568612 CEACAM5P06731 702 aa4.3□□□□□ -1.72
VPS35-208ENST00000568612 PLCG1P19174 1290 aa4.3□□□□□ -1.72
VPS35-208ENST00000568612 BNIP3Q12983 259 aa4.3□□□□□ -1.72
VPS35-208ENST00000568612 CNGB1Q14028 1251 aaPredicted RBP4.3□□□□□ -1.72
VPS35-208ENST00000568612 SLBPQ14493 270 aaKnown RBP eCLIP4.3□□□□□ -1.72
VPS35-208ENST00000568612 MFSD2AQ8NA29 543 aa4.3□□□□□ -1.72
VPS35-208ENST00000568612 NETO1Q8TDF5 533 aa4.3□□□□□ -1.72
VPS35-208ENST00000568612 GATAD2BQ8WXI9 593 aa4.3□□□□□ -1.72
VPS35-208ENST00000568612 PUS7Q96PZ0 661 aaKnown RBP4.3□□□□□ -1.72
VPS35-208ENST00000568612 POLR3GLQ9BT43 218 aa4.3□□□□□ -1.72
VPS35-208ENST00000568612 PRDM5Q9NQX1 630 aaPredicted RBP4.3□□□□□ -1.72
VPS35-208ENST00000568612 KLHL3Q9UH77 587 aa4.3□□□□□ -1.72
VPS35-208ENST00000568612 PRDM4Q9UKN5 801 aa4.3□□□□□ -1.72
VPS35-208ENST00000568612 SLC5A6Q9Y289 635 aa4.3□□□□□ -1.72
VPS35-208ENST00000568612 OAS3Q9Y6K5 1087 aaKnown RBP4.3□□□□□ -1.72
VPS35-208ENST00000568612 U3KQE9 123 aa4.3□□□□□ -1.72
VPS35-208ENST00000568612 WASHC2AQ641Q2 1341 aa4.29□□□□□ -1.72
VPS35-208ENST00000568612 SLITRK5O94991 958 aa4.29□□□□□ -1.72
VPS35-208ENST00000568612 CBX7O95931 251 aa4.29□□□□□ -1.72
VPS35-208ENST00000568612 IRAK1P51617 712 aa4.29□□□□□ -1.72
VPS35-208ENST00000568612 IFI16Q16666 785 aaKnown RBP4.29□□□□□ -1.72
VPS35-208ENST00000568612 LETMD1Q6P1Q0 360 aa4.29□□□□□ -1.72
VPS35-208ENST00000568612 ZNF574Q6ZN55 896 aaPredicted RBP4.29□□□□□ -1.72
VPS35-208ENST00000568612 CCDC84Q86UT8 332 aaPredicted RBP4.29□□□□□ -1.72
VPS35-208ENST00000568612 FAM43AQ8N2R8 423 aa4.29□□□□□ -1.72
VPS35-208ENST00000568612 FAM13CQ8NE31 585 aa4.29□□□□□ -1.72
VPS35-208ENST00000568612 FBXO27Q8NI29 283 aa4.29□□□□□ -1.72
VPS35-208ENST00000568612 SECISBP2LQ93073 1101 aaKnown RBP4.29□□□□□ -1.72
VPS35-208ENST00000568612 TMEM87BQ96K49 555 aa4.29□□□□□ -1.72
VPS35-208ENST00000568612 RHOVQ96L33 236 aa4.29□□□□□ -1.72
VPS35-208ENST00000568612 FBXL18Q96ME1 805 aa4.29□□□□□ -1.72
VPS35-208ENST00000568612 HEXIM2Q96MH2 286 aaKnown RBP4.29□□□□□ -1.72
VPS35-208ENST00000568612 TJP2Q9UDY2 1190 aa4.29□□□□□ -1.72
VPS35-208ENST00000568612 TMEM265A0A087WTH1 108 aa4.28□□□□□ -1.72
VPS35-208ENST00000568612 FAM155AB1AL88 458 aaPredicted RBP4.28□□□□□ -1.72
VPS35-208ENST00000568612 IGSF3O75054 1194 aa4.28□□□□□ -1.72
VPS35-208ENST00000568612 CILPO75339 1184 aa4.28□□□□□ -1.72
VPS35-208ENST00000568612 EOMESO95936 686 aa4.28□□□□□ -1.72
VPS35-208ENST00000568612 CST3P01034 146 aaPredicted RBP4.28□□□□□ -1.72
VPS35-208ENST00000568612 PRNPP04156 253 aa4.28□□□□□ -1.72
VPS35-208ENST00000568612 ZNF76P36508 570 aa4.28□□□□□ -1.72
VPS35-208ENST00000568612 EIF4A3P38919 411 aaKnown RBP4.28□□□□□ -1.72
VPS35-208ENST00000568612 CD96P40200 585 aa4.28□□□□□ -1.72
VPS35-208ENST00000568612 OXCT1P55809 520 aa4.28□□□□□ -1.72
VPS35-208ENST00000568612 CHMP4BP1P59074 171 aa4.28□□□□□ -1.72
VPS35-208ENST00000568612 IRX6P78412 446 aaPredicted RBP4.28□□□□□ -1.72
VPS35-208ENST00000568612 HSP90AA2PQ14568 343 aaPredicted RBP4.28□□□□□ -1.72
VPS35-208ENST00000568612 AOC3Q16853 763 aa4.28□□□□□ -1.72
VPS35-208ENST00000568612 CWF19L2Q2TBE0 894 aaKnown RBP4.28□□□□□ -1.72
VPS35-208ENST00000568612 SFRP5Q5T4F7 317 aa4.28□□□□□ -1.72
VPS35-208ENST00000568612 SLC6A19Q695T7 634 aa4.28□□□□□ -1.72
VPS35-208ENST00000568612 ZNF746Q6NUN9 644 aaPredicted RBP4.28□□□□□ -1.72
VPS35-208ENST00000568612 FBXL19Q6PCT2 694 aa4.28□□□□□ -1.72
VPS35-208ENST00000568612 ERMP1Q7Z2K6 904 aa4.28□□□□□ -1.72
VPS35-208ENST00000568612 CDH24Q86UP0 819 aa4.28□□□□□ -1.72
VPS35-208ENST00000568612 STK11IPQ8N1F8 1099 aa4.28□□□□□ -1.72
VPS35-208ENST00000568612 RIN3Q8TB24 985 aa4.28□□□□□ -1.72
VPS35-208ENST00000568612 BCL7CQ8WUZ0 217 aaPredicted RBP4.28□□□□□ -1.72
VPS35-208ENST00000568612 HRASLS5Q96KN8 279 aa4.28□□□□□ -1.72
VPS35-208ENST00000568612 BACH2Q9BYV9 841 aa4.28□□□□□ -1.72
VPS35-208ENST00000568612 TACC3Q9Y6A5 838 aa4.28□□□□□ -1.72
VPS35-208ENST00000568612 RBM47A0AV96 593 aaKnown RBP4.27□□□□□ -1.73
VPS35-208ENST00000568612 FAM221AA4D161 298 aa4.27□□□□□ -1.73
VPS35-208ENST00000568612 UPK3BL1B0FP48 263 aa4.27□□□□□ -1.73
VPS35-208ENST00000568612 UPK3BL2E5RIL1 263 aa4.27□□□□□ -1.73
VPS35-208ENST00000568612 PPM1GO15355 546 aaPredicted RBP4.27□□□□□ -1.73
VPS35-208ENST00000568612 CYP7A1P22680 504 aa4.27□□□□□ -1.73
VPS35-208ENST00000568612 MCM4P33991 863 aa4.27□□□□□ -1.73
VPS35-208ENST00000568612 TNNI2P48788 182 aa4.27□□□□□ -1.73
VPS35-208ENST00000568612 YARSP54577 528 aaKnown RBP4.27□□□□□ -1.73
VPS35-208ENST00000568612 PRKCQQ04759 706 aa4.27□□□□□ -1.73
VPS35-208ENST00000568612 MPP2Q14168 576 aa4.27□□□□□ -1.73
VPS35-208ENST00000568612 PLCL1Q15111 1095 aa4.27□□□□□ -1.73
VPS35-208ENST00000568612 CDKAL1Q5VV42 579 aa4.27□□□□□ -1.73
VPS35-208ENST00000568612 FAM196AQ6ZSG2 479 aa4.27□□□□□ -1.73
VPS35-208ENST00000568612 REC114Q7Z4M0 266 aa4.27□□□□□ -1.73
VPS35-208ENST00000568612 MRPL41Q8IXM3 137 aaKnown RBP4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms