RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 CTNNA3Q9UI47 895 aa26.17■■□□□ 1.78
CLN3-234ENST00000568472 ZHX2Q9Y6X8 837 aa26.17■■□□□ 1.78
CLN3-234ENST00000568472 CEP350Q5VT06 3117 aa26.16■■□□□ 1.78
CLN3-234ENST00000568472 USP17L5A8MUK1 530 aa26.16■■□□□ 1.78
CLN3-234ENST00000568472 SGSM2O43147 1006 aa26.16■■□□□ 1.78
CLN3-234ENST00000568472 GJA5P36382 358 aa26.16■■□□□ 1.78
CLN3-234ENST00000568472 TM4SF4P48230 202 aa26.16■■□□□ 1.78
CLN3-234ENST00000568472 PPARAQ07869 468 aa26.16■■□□□ 1.78
CLN3-234ENST00000568472 SNAPC2Q13487 334 aa26.16■■□□□ 1.78
CLN3-234ENST00000568472 RRP1BQ14684 758 aaKnown RBP26.16■■□□□ 1.78
CLN3-234ENST00000568472 ABCB5Q2M3G0 1257 aa26.16■■□□□ 1.78
CLN3-234ENST00000568472 DYNLL2Q96FJ2 89 aa26.16■■□□□ 1.78
CLN3-234ENST00000568472 AS3MTQ9HBK9 375 aa26.16■■□□□ 1.78
CLN3-234ENST00000568472 ANAPC4Q9UJX5 808 aa26.16■■□□□ 1.78
CLN3-234ENST00000568472 IRF6O14896 467 aa26.15■■□□□ 1.78
CLN3-234ENST00000568472 CDC45O75419 566 aa26.15■■□□□ 1.78
CLN3-234ENST00000568472 PDE4BQ07343 736 aa26.15■■□□□ 1.78
CLN3-234ENST00000568472 MKRN3Q13064 507 aaKnown RBP26.15■■□□□ 1.78
CLN3-234ENST00000568472 CNKSR2Q8WXI2 1034 aa26.15■■□□□ 1.78
CLN3-234ENST00000568472 MKNK2Q9HBH9 465 aa26.15■■□□□ 1.78
CLN3-234ENST00000568472 ZBTB21Q9ULJ3 1066 aa26.15■■□□□ 1.78
CLN3-234ENST00000568472 KCNH4Q9UQ05 1017 aa26.15■■□□□ 1.78
CLN3-234ENST00000568472 SIPA1L1O43166 1804 aa26.15■■□□□ 1.78
CLN3-234ENST00000568472 TESPA1A2RU30 521 aaPredicted RBP26.14■■□□□ 1.78
CLN3-234ENST00000568472 CETPP11597 493 aa26.14■■□□□ 1.78
CLN3-234ENST00000568472 EVX2Q03828 476 aa26.14■■□□□ 1.78
CLN3-234ENST00000568472 BEGAINQ9BUH8 593 aa26.14■■□□□ 1.78
CLN3-234ENST00000568472 AFG3L2Q9Y4W6 797 aa26.14■■□□□ 1.78
CLN3-234ENST00000568472 OTOFQ9HC10 1997 aa26.14■■□□□ 1.77
CLN3-234ENST00000568472 GDF11O95390 407 aa26.13■■□□□ 1.77
CLN3-234ENST00000568472 GH2P01242 217 aa26.13■■□□□ 1.77
CLN3-234ENST00000568472 SLC44A5Q8NCS7 719 aa26.13■■□□□ 1.77
CLN3-234ENST00000568472 MS4A4AQ96JQ5 239 aa26.13■■□□□ 1.77
CLN3-234ENST00000568472 ZIC5Q96T25 663 aa26.13■■□□□ 1.77
CLN3-234ENST00000568472 WDR18Q9BV38 432 aa26.13■■□□□ 1.77
CLN3-234ENST00000568472 CA12O43570 354 aa26.12■■□□□ 1.77
CLN3-234ENST00000568472 PCP11498 1178 aaKnown RBP26.12■■□□□ 1.77
CLN3-234ENST00000568472 OTUD7BQ6GQQ9 843 aa26.12■■□□□ 1.77
CLN3-234ENST00000568472 KIAA1211Q6ZU35 1233 aa26.12■■□□□ 1.77
CLN3-234ENST00000568472 TMEM179Q6ZVK1 233 aa26.12■■□□□ 1.77
CLN3-234ENST00000568472 ZNF280CQ8ND82 737 aa26.12■■□□□ 1.77
CLN3-234ENST00000568472 WBP1LQ9NX94 342 aa26.12■■□□□ 1.77
CLN3-234ENST00000568472 THSD7BQ9C0I4 1608 aa26.12■■□□□ 1.77
CLN3-234ENST00000568472 ZNF444Q8N0Y2 327 aaPredicted RBP26.11■■□□□ 1.77
CLN3-234ENST00000568472 ESYT1Q9BSJ8 1104 aa26.11■■□□□ 1.77
CLN3-234ENST00000568472 BAZ2AQ9UIF9 1905 aaKnown RBP26.1■■□□□ 1.77
CLN3-234ENST00000568472 SMIM22K7EJ46 135 aa26.1■■□□□ 1.77
CLN3-234ENST00000568472 ZNF213O14771 459 aa26.1■■□□□ 1.77
CLN3-234ENST00000568472 ALDH1A1P00352 501 aa26.1■■□□□ 1.77
CLN3-234ENST00000568472 NT5C2P49902 561 aa26.1■■□□□ 1.77
CLN3-234ENST00000568472 JAG1P78504 1218 aa26.1■■□□□ 1.77
CLN3-234ENST00000568472 FASTKD5Q7L8L6 764 aaKnown RBP26.1■■□□□ 1.77
CLN3-234ENST00000568472 IL25Q9H293 177 aa26.1■■□□□ 1.77
CLN3-234ENST00000568472 CCL15-CCL14A0A0B4J2E2 113 aa26.09■■□□□ 1.77
CLN3-234ENST00000568472 MPHOSPH10O00566 681 aaKnown RBP26.09■■□□□ 1.77
CLN3-234ENST00000568472 RAB3GAP1Q15042 981 aa26.09■■□□□ 1.77
CLN3-234ENST00000568472 CCL15Q16663 113 aa26.09■■□□□ 1.77
CLN3-234ENST00000568472 IMMTQ16891 758 aaKnown RBP26.09■■□□□ 1.77
CLN3-234ENST00000568472 RNF41Q9H4P4 317 aaPredicted RBP26.09■■□□□ 1.77
CLN3-234ENST00000568472 U3KPZ7 1027 aaPredicted RBP26.09■■□□□ 1.77
CLN3-234ENST00000568472 FGRP09769 529 aa26.08■■□□□ 1.77
CLN3-234ENST00000568472 RASA1P20936 1047 aa26.08■■□□□ 1.77
CLN3-234ENST00000568472 SPP2Q13103 211 aa26.08■■□□□ 1.77
CLN3-234ENST00000568472 ZCCHC17Q9NP64 241 aaKnown RBP26.08■■□□□ 1.77
CLN3-234ENST00000568472 SAGE1Q9NXZ1 904 aa26.08■■□□□ 1.77
CLN3-234ENST00000568472 DOCK1Q14185 1865 aa26.08■■□□□ 1.77
CLN3-234ENST00000568472 A0A0G2JLL6 359 aaPredicted RBP26.07■■□□□ 1.76
CLN3-234ENST00000568472 TRIM75PA6NK02 468 aa26.07■■□□□ 1.76
CLN3-234ENST00000568472 C19orf81C9J6K1 198 aa26.07■■□□□ 1.76
CLN3-234ENST00000568472 PRRT2Q7Z6L0 340 aaPredicted RBP26.07■■□□□ 1.76
CLN3-234ENST00000568472 IFNL1Q8IU54 200 aa26.07■■□□□ 1.76
CLN3-234ENST00000568472 BRI3BPQ8WY22 251 aa26.07■■□□□ 1.76
CLN3-234ENST00000568472 KANSL2Q9H9L4 492 aa26.07■■□□□ 1.76
CLN3-234ENST00000568472 USP17L10C9JJH3 530 aa26.06■■□□□ 1.76
CLN3-234ENST00000568472 ORC4O43929 436 aa26.06■■□□□ 1.76
CLN3-234ENST00000568472 AKR1B1P15121 316 aa26.06■■□□□ 1.76
CLN3-234ENST00000568472 BACE1P56817 501 aa26.06■■□□□ 1.76
CLN3-234ENST00000568472 CTDSPL2Q05D32 466 aa26.06■■□□□ 1.76
CLN3-234ENST00000568472 SEPT2Q15019 361 aa26.06■■□□□ 1.76
CLN3-234ENST00000568472 STK11IPQ8N1F8 1099 aa26.06■■□□□ 1.76
CLN3-234ENST00000568472 MAP4K1Q92918 833 aa26.06■■□□□ 1.76
CLN3-234ENST00000568472 DDX52Q9Y2R4 599 aaKnown RBP eCLIP26.06■■□□□ 1.76
CLN3-234ENST00000568472 GUCY1A2P33402 732 aa26.05■■□□□ 1.76
CLN3-234ENST00000568472 SH3D19Q5HYK7 790 aa26.05■■□□□ 1.76
CLN3-234ENST00000568472 PPP4R3BQ5MIZ7 849 aa26.05■■□□□ 1.76
CLN3-234ENST00000568472 AKNAD1Q5T1N1 836 aa26.05■■□□□ 1.76
CLN3-234ENST00000568472 MFSD6Q6ZSS7 791 aa26.05■■□□□ 1.76
CLN3-234ENST00000568472 FRMD4AQ9P2Q2 1039 aaPredicted RBP26.05■■□□□ 1.76
CLN3-234ENST00000568472 USP14P54578 494 aa26.04■■□□□ 1.76
CLN3-234ENST00000568472 PTH1RQ03431 593 aa26.04■■□□□ 1.76
CLN3-234ENST00000568472 SHROOM1Q2M3G4 852 aaPredicted RBP26.04■■□□□ 1.76
CLN3-234ENST00000568472 CCDC84Q86UT8 332 aaPredicted RBP26.04■■□□□ 1.76
CLN3-234ENST00000568472 PROCA1Q8NCQ7 364 aaPredicted RBP26.04■■□□□ 1.76
CLN3-234ENST00000568472 STAG1Q8WVM7 1258 aa26.04■■□□□ 1.76
CLN3-234ENST00000568472 SH2D4AQ9H788 454 aa26.04■■□□□ 1.76
CLN3-234ENST00000568472 PRDM1O75626 825 aa26.03■■□□□ 1.76
CLN3-234ENST00000568472 HAND2P61296 217 aa26.03■■□□□ 1.76
CLN3-234ENST00000568472 ANKRD23Q86SG2 305 aa26.03■■□□□ 1.76
CLN3-234ENST00000568472 NEDD1Q8NHV4 660 aa26.03■■□□□ 1.76
CLN3-234ENST00000568472 PTPN18Q99952 460 aa26.03■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms