RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 MORF4L1Q9UBU8 362 aa13.85□□□□□ -0.19
CLN3-226ENST00000567160 MYH2Q9UKX2 1941 aa13.85□□□□□ -0.19
CLN3-226ENST00000567160 TMEM265A0A087WTH1 108 aa13.84□□□□□ -0.19
CLN3-226ENST00000567160 APBB1O00213 710 aa13.84□□□□□ -0.19
CLN3-226ENST00000567160 SURF6O75683 361 aaKnown RBP13.84□□□□□ -0.19
CLN3-226ENST00000567160 IGHDP01880 384 aa13.84□□□□□ -0.19
CLN3-226ENST00000567160 SLC5A1P13866 664 aa13.84□□□□□ -0.19
CLN3-226ENST00000567160 PRDX5P30044 214 aa13.84□□□□□ -0.19
CLN3-226ENST00000567160 IRX3P78415 501 aaPredicted RBP13.84□□□□□ -0.19
CLN3-226ENST00000567160 SPP2Q13103 211 aa13.84□□□□□ -0.19
CLN3-226ENST00000567160 HDAC1Q13547 482 aaPredicted RBP13.84□□□□□ -0.19
CLN3-226ENST00000567160 B4GALNT3Q6L9W6 998 aa13.84□□□□□ -0.19
CLN3-226ENST00000567160 ZNF280CQ8ND82 737 aa13.84□□□□□ -0.19
CLN3-226ENST00000567160 CCDC136Q96JN2 1154 aa13.84□□□□□ -0.19
CLN3-226ENST00000567160 EXOC6BQ9Y2D4 811 aa13.84□□□□□ -0.19
CLN3-226ENST00000567160 CCND3P30281 292 aaPredicted RBP13.83□□□□□ -0.2
CLN3-226ENST00000567160 MAPK4P31152 587 aa13.83□□□□□ -0.2
CLN3-226ENST00000567160 RGS2P41220 211 aa13.83□□□□□ -0.2
CLN3-226ENST00000567160 HMGCS2P54868 508 aa13.83□□□□□ -0.2
CLN3-226ENST00000567160 OS9Q13438 667 aaPredicted RBP13.83□□□□□ -0.2
CLN3-226ENST00000567160 SHHQ15465 462 aa13.83□□□□□ -0.2
CLN3-226ENST00000567160 SLF2Q8IX21 1173 aa13.83□□□□□ -0.2
CLN3-226ENST00000567160 GPRC5AQ8NFJ5 357 aa13.83□□□□□ -0.2
CLN3-226ENST00000567160 OSBPL5Q9H0X9 879 aaPredicted RBP13.83□□□□□ -0.2
CLN3-226ENST00000567160 TTYH1Q9H313 450 aaPredicted RBP13.83□□□□□ -0.2
CLN3-226ENST00000567160 COPRSQ9NQ92 184 aa13.83□□□□□ -0.2
CLN3-226ENST00000567160 GNL3LQ9NVN8 582 aaKnown RBP13.83□□□□□ -0.2
CLN3-226ENST00000567160 ATAD5Q96QE3 1844 aa13.83□□□□□ -0.2
CLN3-226ENST00000567160 DDTLA6NHG4 134 aaPredicted RBP13.82□□□□□ -0.2
CLN3-226ENST00000567160 EYA2O00167 538 aa13.82□□□□□ -0.2
CLN3-226ENST00000567160 TBC1D12O60347 775 aa13.82□□□□□ -0.2
CLN3-226ENST00000567160 MSCO60682 206 aa13.82□□□□□ -0.2
CLN3-226ENST00000567160 FGFR2P21802 821 aa13.82□□□□□ -0.2
CLN3-226ENST00000567160 G3BP1Q13283 466 aaKnown RBP eCLIP13.82□□□□□ -0.2
CLN3-226ENST00000567160 SH3BP5LQ7L8J4 393 aa13.82□□□□□ -0.2
CLN3-226ENST00000567160 CCDC84Q86UT8 332 aaPredicted RBP13.82□□□□□ -0.2
CLN3-226ENST00000567160 ZGPATQ8N5A5 531 aaKnown RBP13.82□□□□□ -0.2
CLN3-226ENST00000567160 LPIN2Q92539 896 aa13.82□□□□□ -0.2
CLN3-226ENST00000567160 APBA2Q99767 749 aa13.82□□□□□ -0.2
CLN3-226ENST00000567160 AS3MTQ9HBK9 375 aa13.82□□□□□ -0.2
CLN3-226ENST00000567160 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.82□□□□□ -0.2
CLN3-226ENST00000567160 SALL1Q9NSC2 1324 aa13.82□□□□□ -0.2
CLN3-226ENST00000567160 RFX7Q2KHR2 1363 aa13.82□□□□□ -0.2
CLN3-226ENST00000567160 ATN1P54259 1190 aaPredicted RBP13.81□□□□□ -0.2
CLN3-226ENST00000567160 RTP1P59025 263 aa13.81□□□□□ -0.2
CLN3-226ENST00000567160 PICALMQ13492 652 aa13.81□□□□□ -0.2
CLN3-226ENST00000567160 BCL11AQ9H165 835 aa13.81□□□□□ -0.2
CLN3-226ENST00000567160 DCTPP1Q9H773 170 aa13.81□□□□□ -0.2
CLN3-226ENST00000567160 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.81□□□□□ -0.2
CLN3-226ENST00000567160 CWC22Q9HCG8 908 aaKnown RBP13.81□□□□□ -0.2
CLN3-226ENST00000567160 RAPGEFL1Q9UHV5 662 aa13.81□□□□□ -0.2
CLN3-226ENST00000567160 NOP58Q9Y2X3 529 aaKnown RBP13.81□□□□□ -0.2
CLN3-226ENST00000567160 NCOR1O75376 2440 aa13.81□□□□□ -0.2
CLN3-226ENST00000567160 USP17L5A8MUK1 530 aa13.8□□□□□ -0.2
CLN3-226ENST00000567160 DNM1LO00429 736 aa13.8□□□□□ -0.2
CLN3-226ENST00000567160 CIAO1O76071 339 aa13.8□□□□□ -0.2
CLN3-226ENST00000567160 SH3D19Q5HYK7 790 aa13.8□□□□□ -0.2
CLN3-226ENST00000567160 C9orf50Q5SZB4 431 aa13.8□□□□□ -0.2
CLN3-226ENST00000567160 MFSD14CQ5VZR4 134 aa13.8□□□□□ -0.2
CLN3-226ENST00000567160 ATG9AQ7Z3C6 839 aa13.8□□□□□ -0.2
CLN3-226ENST00000567160 DZIP1Q86YF9 867 aaKnown RBP13.8□□□□□ -0.2
CLN3-226ENST00000567160 GTF3C2Q8WUA4 911 aaPredicted RBP13.8□□□□□ -0.2
CLN3-226ENST00000567160 TMOD4Q9NZQ9 345 aa13.8□□□□□ -0.2
CLN3-226ENST00000567160 GAKO14976 1311 aa13.8□□□□□ -0.2
CLN3-226ENST00000567160 SEMA3EO15041 775 aa13.79□□□□□ -0.2
CLN3-226ENST00000567160 IL15P40933 162 aaPredicted RBP13.79□□□□□ -0.2
CLN3-226ENST00000567160 HSP90AB4PQ58FF6 505 aa13.79□□□□□ -0.2
CLN3-226ENST00000567160 PLEKHH3Q7Z736 793 aa13.79□□□□□ -0.2
CLN3-226ENST00000567160 LPAR1Q92633 364 aa13.79□□□□□ -0.2
CLN3-226ENST00000567160 USP6NLQ92738 828 aa13.79□□□□□ -0.2
CLN3-226ENST00000567160 PRDM5Q9NQX1 630 aaPredicted RBP13.79□□□□□ -0.2
CLN3-226ENST00000567160 DDX20Q9UHI6 824 aaKnown RBP13.79□□□□□ -0.2
CLN3-226ENST00000567160 DENND2AQ9ULE3 1009 aa13.79□□□□□ -0.2
CLN3-226ENST00000567160 ATP11BQ9Y2G3 1177 aa13.79□□□□□ -0.2
CLN3-226ENST00000567160 SMARCA5O60264 1052 aaPredicted RBP13.78□□□□□ -0.2
CLN3-226ENST00000567160 GLRX3O76003 335 aaKnown RBP13.78□□□□□ -0.2
CLN3-226ENST00000567160 HOXA7P31268 230 aaPredicted RBP13.78□□□□□ -0.2
CLN3-226ENST00000567160 HERVK_113P62684 666 aa13.78□□□□□ -0.2
CLN3-226ENST00000567160 TFCP2Q12800 502 aa13.78□□□□□ -0.2
CLN3-226ENST00000567160 MAP3K12Q12852 859 aa13.78□□□□□ -0.2
CLN3-226ENST00000567160 CCL14Q16627 93 aa13.78□□□□□ -0.2
CLN3-226ENST00000567160 GPR142Q7Z601 462 aa13.78□□□□□ -0.2
CLN3-226ENST00000567160 ATXN2LQ8WWM7 1075 aaKnown RBP13.78□□□□□ -0.2
CLN3-226ENST00000567160 DDX4Q9NQI0 724 aaKnown RBP13.78□□□□□ -0.2
CLN3-226ENST00000567160 FBXO3Q9UK99 471 aa13.78□□□□□ -0.2
CLN3-226ENST00000567160 RLFQ13129 1914 aa13.78□□□□□ -0.2
CLN3-226ENST00000567160 RAB11FIP3O75154 756 aa13.77□□□□□ -0.21
CLN3-226ENST00000567160 SLURP2P0DP57 97 aa13.77□□□□□ -0.21
CLN3-226ENST00000567160 CNGA1P29973 690 aa13.77□□□□□ -0.21
CLN3-226ENST00000567160 HOXD11P31277 338 aaPredicted RBP13.77□□□□□ -0.21
CLN3-226ENST00000567160 CAP2P40123 477 aa13.77□□□□□ -0.21
CLN3-226ENST00000567160 BTDP43251 543 aa13.77□□□□□ -0.21
CLN3-226ENST00000567160 ERVK-9P63128 1117 aa13.77□□□□□ -0.21
CLN3-226ENST00000567160 ERVK-24P63145 666 aa13.77□□□□□ -0.21
CLN3-226ENST00000567160 MORN1Q5T089 497 aa13.77□□□□□ -0.21
CLN3-226ENST00000567160 ANKRD45Q5TZF3 282 aa13.77□□□□□ -0.21
CLN3-226ENST00000567160 ERC1Q8IUD2 1116 aa13.77□□□□□ -0.21
CLN3-226ENST00000567160 SMC5Q8IY18 1101 aa13.77□□□□□ -0.21
CLN3-226ENST00000567160 IL27Q8NEV9 243 aa13.77□□□□□ -0.21
CLN3-226ENST00000567160 RHPN1Q8TCX5 695 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms